Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z4H	14497	2023-08-14	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	13.12	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.003	0.55	0.0	0.04	14.92	0.00	2.146	13.75	0.25	2.3	97.7	0.0	1.41	1.66	0.91	0.86	1.89	13900	1334	4	142	0	0	0	logfile
✔	7RZT	24777	2023-08-09	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7oDR	12845	2023-08-09	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.70	0.0	0.04	15.27	0.01	1.900	10.20	2.30	2.0	98.0	0.0	0.89	1.26	0.76	0.84	2.70	107464	9244	68	1489	135	0	0	logfile
✔	6V3E	21034	2023-08-27	2019-11-25	4.4	4.86	—	3.6	0.002	0.47	0.0	0.03	14.33	0.02	2.039	11.24	0.05	2.4	97.6	0.0	-1.40	0.88	0.74	—	3.6	0.005	0.78	0.0	0.04	16.68	0.01	1.560	32.14	0.11	5.8	94.2	0.0	-0.87	1.76	0.90	0.78	—	50850	2311	20	1528	0	0	0	logfile
✔	8HAJ	34592	2023-08-14	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.95	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.62	0.0	0.04	26.56	0.00	2.114	18.46	0.00	2.8	97.2	0.0	1.45	1.61	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	7TAN	25777	2023-08-12	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	7oBR	12801	2023-08-30	2021-04-23	2.8	2.88	—	2.9	0.002	0.49	1.0	0.03	15.19	0.00	1.835	8.03	2.55	4.6	95.3	0.0	0.58	0.61	0.80	2.85	2.8	0.004	0.68	0.0	0.04	17.37	0.01	1.834	9.58	3.96	5.9	94.0	0.1	-0.12	1.21	0.65	0.86	3.11	146701	7484	60	4019	102	0	0	logfile
✔	8FZR	29638	2023-08-09	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	15.49	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.2	0.003	0.69	0.0	0.04	18.82	0.00	2.121	20.51	0.22	4.6	95.2	0.2	-1.85	1.70	0.83	0.65	0.78	5711	503	3	77	1	0	0	logfile
✔	7oDS	12846	2023-08-10	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.26	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.007	0.85	0.0	0.05	15.09	0.01	1.757	13.49	0.41	4.0	96.0	0.0	-0.12	1.70	0.80	0.80	2.27	108339	9371	67	1487	132	0	0	logfile
✔	8EUi	24423	2023-08-16	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	7oDT	12847	2023-08-10	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.01	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.003	0.58	0.0	0.04	14.67	0.00	1.891	10.64	0.27	2.6	97.4	0.0	0.69	0.71	0.78	0.83	2.53	110473	9585	71	1526	110	0	0	logfile
✔	8BF8	16016	2023-08-09	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	13.85	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.54	0.0	0.03	15.05	0.00	2.097	9.34	3.26	2.7	97.3	0.0	0.66	0.89	0.59	0.75	2.83	4686	302	2	111	0	0	0	logfile
✔	8EUG	24412	2023-08-16	2022-10-18	2.8	2.82	—	2.8	0.005	0.53	0.0	0.03	15.48	0.00	2.091	7.67	0.47	3.5	96.2	0.3	-0.23	0.81	0.81	3.22	2.8	0.004	0.59	0.0	0.04	15.74	0.00	2.056	9.21	1.87	4.0	95.8	0.2	0.13	0.30	0.81	0.82	3.01	123162	7108	47	3138	1	0	0	logfile
✔	7V9A	31813	2023-08-14	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	14.82	0.00	2.260	6.87	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.003	0.71	0.0	0.04	17.01	0.00	2.138	13.52	0.33	8.4	91.6	0.0	-2.16	1.88	0.72	0.68	1.10	16876	1723	10	146	0	0	0	logfile
✔	8ETC	24398	2023-08-23	2022-10-16	3.1	3.22	—	3.1	0.002	0.53	0.0	0.03	16.07	0.00	2.067	10.42	0.70	3.9	95.9	0.2	-0.30	0.65	0.60	0.73	3.1	0.005	0.70	0.0	0.04	16.96	0.01	2.001	15.54	0.64	5.2	94.7	0.1	-0.24	0.94	0.72	0.71	1.71	95651	6128	43	2287	1	0	0	logfile
✔	7JiL	22345	2023-08-18	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.71	0.00	1.991	6.76	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.004	0.59	0.0	0.03	15.71	0.00	2.078	6.25	5.08	11.1	88.8	0.0	-2.22	0.38	0.82	0.86	2.68	132739	5314	54	4327	0	1	0	logfile
✔	8HAM	34596	2023-08-14	2022-10-26	4.5	4.52	4.33	3.7	0.003	0.56	0.0	0.03	25.29	0.00	2.260	9.62	0.00	1.4	98.6	0.0	2.08	0.84	0.77	—	3.7	0.003	0.59	0.0	0.03	26.83	0.00	2.183	13.71	0.00	2.1	97.9	0.0	2.10	2.21	0.87	0.83	—	17177	1288	11	330	0	0	0	logfile
✔	8ESR	24422	2023-08-12	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	15.69	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.005	0.57	0.0	0.04	15.74	0.00	2.095	10.25	0.32	4.1	95.9	0.1	1.10	0.34	0.78	0.77	2.07	116762	9286	57	2372	1	0	0	logfile
✔	8HAN	34597	2023-08-14	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	25.04	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.004	0.61	0.0	0.03	26.89	0.00	2.150	15.58	0.00	2.1	97.9	0.0	2.09	0.83	0.86	0.80	—	16180	1261	11	294	0	0	0	logfile
✔	7V99	31811	2023-08-13	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	14.51	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.003	0.60	0.0	0.03	15.54	0.00	2.191	12.54	0.40	5.9	94.1	0.1	-0.02	1.36	0.82	0.75	0.86	14582	1170	5	249	0	0	0	logfile

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