Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7WY0	32883	2023-04-21	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	6XS6	22301	2023-04-24	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7JVR	22511	2023-04-21	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.75	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.26	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	7B2M	11988	2023-04-26	2020-11-27	3.39	2.21	3.36	3.0	0.003	0.49	0.0	0.04	13.63	0.00	2.009	6.54	0.00	3.6	96.4	0.0	-0.15	0.72	0.72	2.60	2.1	0.004	0.62	0.0	0.04	16.17	0.00	2.055	10.37	0.39	5.4	94.6	0.0	-0.76	1.24	0.72	0.74	2.79	23198	1506	6	0	4	0	11534	logfile
✔	7XSo	33429	2023-04-21	2022-05-15	3.01	2.21	2.88	2.1	0.009	1.02	4.0	0.07	18.00	0.01	2.157	4.29	3.99	6.0	94.0	0.1	-2.97	0.80	0.81	3.02	2.1	0.002	0.58	0.0	0.04	18.74	0.00	2.169	4.99	0.54	4.8	95.2	0.0	-0.25	0.55	0.81	0.83	3.00	10971	1271	3	35	4	0	0	logfile
✔	7WiC	32528	2023-04-21	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7V0S	26949	2023-04-21	2022-05-10	2.5	2.21	2.53	2.3	0.004	0.73	0.0	0.05	16.59	0.00	2.208	5.09	2.55	1.7	98.2	0.1	1.73	0.70	0.88	4.46	2.3	0.004	0.59	0.0	0.04	16.67	0.00	2.190	6.46	2.36	1.9	98.1	0.0	1.84	0.48	0.70	0.89	4.58	10303	1315	10	0	3	178	0	logfile
✔	7PiL	13441	2023-04-26	2021-08-20	2.5	2.21	—	2.4	0.005	0.98	0.0	0.05	16.34	0.01	2.058	1.90	0.21	1.7	98.3	0.0	1.10	0.73	0.84	5.38	2.3	0.004	0.78	0.0	0.04	17.83	0.00	1.882	6.93	1.48	1.1	98.9	0.0	2.57	1.25	0.72	0.87	4.76	22480	2291	66	0	73	4	0	logfile
✔	8A2Y	15108	2023-04-23	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	8DWH	27754	2023-04-20	2022-08-01	3.25	2.21	3.25	2.1	0.005	0.85	0.0	0.04	13.05	0.00	2.129	7.56	0.00	3.4	96.6	0.0	-0.94	0.73	0.78	4.11	2.1	0.004	0.62	0.0	0.04	15.36	0.00	2.096	7.64	0.62	3.3	96.7	0.0	0.39	0.97	0.73	0.81	3.35	6444	858	4	0	1	0	0	logfile
✔	6W6P	21562	2023-04-28	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.48	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.6	0.004	0.72	0.0	0.04	16.11	0.01	1.971	5.86	8.23	8.7	91.2	0.1	-1.86	1.60	0.79	0.86	2.56	133554	5058	51	4378	4	0	0	logfile
✔	7UZ3	26874	2023-04-24	2022-05-08	2.35	2.21	2.35	2.2	0.006	0.85	0.0	0.08	16.43	0.01	2.063	2.87	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.54	0.0	0.04	16.06	0.00	2.092	6.59	0.84	2.2	97.8	0.0	1.78	0.27	0.63	0.87	5.22	18415	1114	10	0	20	153	9100	logfile
✔	7L1S	23117	2023-04-26	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.65	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.9	0.003	0.84	0.0	0.05	17.89	0.01	1.910	18.19	0.78	4.3	95.7	0.0	-0.16	1.69	0.65	0.69	0.79	24176	3118	12	0	11	0	0	logfile
✔	7Q2X	13783	2023-04-24	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.003	0.69	0.0	0.04	20.45	0.00	1.906	10.04	2.31	3.4	96.6	0.0	1.78	1.28	0.77	0.79	2.17	18240	2098	8	72	6	0	0	logfile
✔	7XT4	33439	2023-04-24	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.004	0.62	0.0	0.04	18.32	0.00	2.219	8.16	0.47	4.7	95.3	0.1	0.35	1.44	0.81	0.82	3.13	16850	1939	5	55	4	0	0	logfile
✔	8CSW	26973	2023-04-20	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.002	0.52	0.0	0.04	16.70	0.00	2.152	4.25	1.25	1.4	98.6	0.0	1.11	0.50	0.62	0.88	5.56	5332	657	1	0	0	165	0	logfile
✔	8ASD	15614	2023-04-23	2022-08-19	2.6	2.22	2.62	2.4	0.006	0.65	0.0	0.04	13.76	0.01	2.030	3.99	0.06	3.6	96.4	0.0	-0.27	0.64	0.84	4.06	2.4	0.002	0.49	0.0	0.04	16.15	0.00	2.002	6.02	0.68	3.4	96.6	0.0	0.69	0.31	0.65	0.86	3.69	15531	1826	9	44	4	32	0	logfile
✔	7V0Q	26948	2023-04-20	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.57	0.0	0.04	18.66	0.00	2.150	4.54	2.86	1.2	98.8	0.0	1.61	0.49	0.59	0.89	5.64	5301	658	1	0	0	127	0	logfile
✔	6XiT	22200	2023-04-25	2020-06-21	3.3	2.22	—	3.5	0.010	0.97	0.0	0.06	14.19	0.01	1.894	10.11	0.74	4.0	96.0	0.0	-3.79	0.65	0.73	3.11	3.5	0.002	0.58	0.0	0.04	16.42	0.00	2.188	11.97	0.37	2.5	97.5	0.0	0.40	1.12	0.69	0.81	2.04	10403	1308	8	0	7	0	0	logfile

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