Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JVR	22511	2023-09-29	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.75	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.26	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	8CSW	26973	2023-09-28	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.002	0.52	0.0	0.04	16.70	0.00	2.152	4.25	1.25	1.4	98.6	0.0	1.11	0.50	0.62	0.88	5.56	5332	657	1	0	0	165	0	logfile
✔	7V0Q	26948	2023-09-28	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.57	0.0	0.04	18.66	0.00	2.150	4.54	2.86	1.2	98.8	0.0	1.61	0.49	0.59	0.89	5.64	5301	658	1	0	0	127	0	logfile
✔	7UZU	26918	2023-09-28	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✔	7NJ1	12369	2023-09-30	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.13	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile
✔	7SCA	25031	2023-09-28	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7T6U	25728	2023-09-29	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.66	0.0	0.04	16.06	0.00	2.121	9.58	2.24	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.37	9033	1152	6	0	2	0	0	logfile
✔	7X21	32954	2023-09-30	2022-02-25	2.8	2.23	2.65	2.6	0.005	1.15	0.0	0.05	14.80	0.01	1.943	7.40	0.00	4.0	96.0	0.0	0.45	0.58	0.79	3.97	2.6	0.002	0.79	0.0	0.04	16.99	0.00	2.010	6.82	1.93	2.8	97.2	0.0	0.85	0.35	0.59	0.81	3.22	10167	1263	5	0	10	18	0	logfile
✔	7LJC	23390	2023-09-29	2021-01-28	3.0	2.23	—	2.1	0.005	1.00	0.0	0.07	8.58	0.01	2.282	5.25	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.62	0.0	0.04	14.86	0.00	2.142	11.14	1.79	2.2	97.8	0.0	0.95	1.22	0.75	0.78	2.96	8544	1040	6	0	14	0	0	logfile
✘	7V69	31739	2023-09-30	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✔	7VVK	32142	2023-09-29	2021-11-06	3.3	2.24	3.30	3.3	0.015	1.75	0.0	0.09	13.87	0.01	2.220	7.68	0.47	4.2	95.6	0.2	-0.92	0.62	0.71	2.44	3.3	0.004	0.61	0.0	0.04	16.65	0.00	2.121	10.88	0.47	3.7	96.3	0.0	0.30	1.29	0.66	0.72	1.95	8516	1121	6	0	0	0	0	logfile
✔	7RZV	24779	2023-09-27	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	8iJX	35502	2023-09-30	2023-02-28	2.08	2.24	2.11	2.3	0.007	0.93	0.0	0.05	15.21	0.01	2.024	5.04	1.50	1.7	98.3	0.0	1.40	0.64	0.84	6.06	2.3	0.004	0.64	0.0	0.05	17.04	0.01	1.969	5.14	1.69	1.8	98.2	0.0	1.05	0.80	0.69	0.87	5.82	10545	1251	6	0	12	373	0	logfile
✔	7RZR	24775	2023-09-27	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7WY8	32887	2023-09-28	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.57	0.0	0.04	15.15	0.00	2.173	4.56	2.07	3.2	96.8	0.0	1.11	0.42	0.77	0.78	2.72	8049	1015	5	0	0	0	0	logfile
✔	7VVL	32143	2023-09-29	2021-11-06	2.8	2.24	2.76	2.9	0.014	1.69	0.0	0.09	17.70	0.00	2.204	4.33	7.24	4.3	95.7	0.1	-0.88	0.59	0.76	3.21	3.0	0.006	0.66	0.0	0.05	18.13	0.00	2.115	7.72	5.12	4.3	95.7	0.0	0.40	0.54	0.62	0.77	2.46	8725	1126	6	0	0	1	0	logfile
✔	7SCH	25035	2023-09-29	2021-09-28	3.1	2.24	3.07	2.0	0.003	0.62	0.0	0.05	11.95	0.00	2.218	9.09	0.19	4.1	95.9	0.0	0.02	0.78	0.75	3.40	2.0	0.003	0.61	0.0	0.04	15.25	0.00	2.063	10.70	0.75	5.0	95.0	0.0	0.39	0.40	0.78	0.80	2.89	9711	1190	3	0	3	0	0	logfile
✔	7Y67	33636	2023-09-30	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.09	0.01	1.877	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	2.1	0.004	0.59	0.0	0.04	16.70	0.00	2.145	5.24	2.29	3.6	96.4	0.0	0.45	0.48	0.81	0.82	2.59	8889	1135	6	0	1	0	0	logfile
✔	7EiB	31145	2023-09-28	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.65	0.0	0.04	16.05	0.00	2.132	10.34	2.02	2.4	97.6	0.0	1.21	1.20	0.74	0.77	1.90	7204	928	5	0	0	0	0	logfile
✔	7YoN	33984	2023-09-29	2022-08-01	2.95	2.24	—	3.0	0.003	0.50	0.0	0.04	13.65	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.003	0.57	0.0	0.04	15.70	0.00	2.192	4.38	1.79	2.2	97.8	0.0	1.36	0.37	0.78	0.86	3.10	9161	1166	8	0	0	2	0	logfile

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