Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S3i	24825	2023-07-04	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	7SQV	25396	2023-07-03	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7ZP8	14850	2023-07-15	2022-04-26	2.2	3.37	2.30	2.5	0.008	1.05	2.0	0.11	19.16	0.00	1.813	5.05	1.68	4.7	95.1	0.2	-0.45	0.78	0.87	4.53	2.5	0.006	0.60	0.0	0.04	15.32	0.00	2.067	7.69	1.33	4.7	95.2	0.1	0.15	1.62	0.80	0.93	4.07	90951	3145	32	3095	0	0	0	logfile
✔	8Si5	40499	2023-07-13	2023-04-14	2.17	2.32	2.30	2.3	0.015	1.22	0.0	0.07	17.88	0.01	2.001	3.41	0.31	7.7	92.1	0.2	-3.02	0.60	0.78	4.56	2.3	0.005	0.69	0.0	0.05	17.46	0.00	1.857	13.97	0.69	5.6	94.4	0.0	-0.20	0.67	0.65	0.86	3.67	74865	4388	12	0	65	404	35916	logfile
✔	6UUS	20901	2023-07-05	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	8E3Y	27873	2023-07-05	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.54	0.0	0.04	15.61	0.00	2.222	8.10	0.42	1.9	98.1	0.0	1.94	0.80	0.74	0.88	4.23	8966	1139	8	0	0	14	0	logfile
✔	7UZU	26918	2023-07-04	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✘	7Q3L	13793	2023-07-10	2021-10-28	2.21	2.93	2.31	2.6	0.008	1.50	26.0	0.12	15.22	0.01	1.876	2.99	2.50	3.2	96.8	0.0	-1.25	0.81	0.86	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20470	2440	16	41	4	180	0	logfile
✔	6UVA	20906	2023-07-05	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✔	7BGL	12183	2023-07-10	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.70	0.0	0.08	19.34	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.002	0.59	0.0	0.04	17.17	0.00	2.143	8.93	3.27	7.1	92.9	0.0	-0.12	0.94	0.74	0.90	3.06	120484	15626	104	0	52	0	0	logfile
✔	6PXM	20521	2023-07-15	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.64	0.00	2.214	4.08	0.03	1.8	98.2	0.0	5.31	1.48	0.79	0.90	3.81	32736	4080	24	0	0	0	0	logfile
✔	7Z1T	14452	2023-07-09	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.003	0.50	0.0	0.03	15.84	0.00	2.216	5.48	3.28	1.5	98.5	0.0	3.72	1.29	0.67	0.92	3.41	18492	2268	12	0	0	0	0	logfile
✔	7XKT	33270	2023-07-17	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	18.94	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.57	0.0	0.04	16.83	0.00	2.157	3.24	0.22	2.5	97.5	0.0	4.54	1.26	0.56	0.81	4.01	34488	1992	36	0	108	444	16008	logfile
✔	8G3R	29709	2023-07-07	2023-02-08	2.3	3.00	2.32	2.8	0.014	1.67	4.0	0.09	13.63	0.01	2.187	0.45	0.06	3.4	96.4	0.2	-0.80	0.84	0.92	6.44	2.8	0.002	0.61	0.0	0.04	14.96	0.00	2.167	4.83	1.03	2.4	97.4	0.2	0.15	0.46	0.75	0.88	5.25	14899	1790	38	0	86	0	0	logfile
✔	7XMU	33305	2023-07-07	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	8Si2	40496	2023-07-17	2023-04-14	2.19	2.32	2.33	2.4	0.012	1.13	0.0	0.06	19.78	0.01	2.026	2.74	0.20	8.8	91.0	0.3	-3.93	0.63	0.73	3.94	2.4	0.004	0.69	0.0	0.04	19.76	0.00	2.154	10.82	0.56	6.7	93.1	0.2	-0.11	0.64	0.65	0.85	3.43	39022	4420	12	0	74	168	0	logfile
✔	8DG9	27419	2023-07-07	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	16.95	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.003	0.84	0.0	0.05	16.88	0.00	2.141	5.44	1.77	2.9	97.1	0.0	0.26	1.11	0.68	0.84	4.52	15450	2007	12	0	6	0	0	logfile
✔	7ZZ5	15035	2023-07-03	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.33	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.58	0.0	0.04	17.12	0.00	2.183	9.12	1.60	3.3	96.7	0.0	0.44	0.32	0.89	0.89	3.82	3633	461	1	0	2	0	0	logfile
✔	8HC1	34648	2023-07-07	2022-11-01	2.3	2.91	2.33	2.6	0.005	0.50	0.0	0.04	15.03	0.00	2.168	6.79	0.69	3.1	96.9	0.0	0.95	0.82	0.87	4.32	2.6	0.004	0.57	0.0	0.04	16.18	0.00	2.146	8.55	1.34	3.2	96.8	0.0	1.03	0.38	0.82	0.89	4.19	120048	15468	48	0	0	0	0	logfile
✔	8EEP	28054	2023-07-04	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile

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