Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQG	25384	2023-07-04	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	13.94	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.65	0.0	0.05	18.17	0.00	2.082	8.84	1.74	3.9	96.1	0.0	1.31	0.97	0.81	0.83	3.63	6630	810	6	0	12	0	0	logfile
✔	6TAX	10429	2023-07-16	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.46	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.79	0.00	2.002	10.57	0.15	8.2	91.8	0.0	-0.10	1.60	0.88	0.81	2.07	35235	4349	1	0	71	0	0	logfile
✔	7U9Q	26405	2023-07-14	2022-03-11	3.11	3.51	—	1.9	0.003	0.85	0.0	0.04	14.10	0.01	2.065	12.40	0.66	3.4	96.5	0.1	-1.28	0.86	0.79	2.19	1.9	0.004	0.70	0.0	0.04	14.75	0.00	2.069	11.77	0.15	3.6	96.3	0.1	0.82	0.46	0.88	0.86	2.50	138608	17324	12	0	12	0	0	logfile
✔	7N1U	24123	2023-07-12	2021-05-28	3.14	2.62	—	1.9	0.013	1.77	7.0	0.13	14.03	0.01	2.003	6.59	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	2.1	0.004	0.77	0.0	0.05	15.73	0.00	2.145	11.15	0.46	4.5	95.5	0.0	-0.05	0.65	0.84	0.82	2.39	26619	3225	39	0	99	0	0	logfile
✔	7WoG	32651	2023-07-03	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✘	7V69	31739	2023-07-05	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✔	8DBi	27285	2023-07-07	2022-06-14	2.0	2.07	2.03	2.0	0.012	1.17	0.0	0.06	18.16	0.04	1.910	5.92	1.15	4.3	95.7	0.0	0.57	0.73	0.87	6.48	2.0	0.003	1.62	0.0	0.05	16.44	0.00	1.844	5.01	1.91	3.9	96.1	0.0	0.83	0.89	0.74	0.91	6.36	14496	1854	18	0	30	12	0	logfile
✔	7RZR	24775	2023-07-03	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	8EBU	27998	2023-07-11	2022-08-31	3.3	2.53	3.30	2.0	0.002	0.49	0.0	0.04	12.94	0.00	2.188	7.98	3.02	4.0	96.0	0.0	0.84	0.76	0.72	1.90	2.1	0.003	0.77	0.0	0.04	17.62	0.00	2.140	14.19	0.64	5.3	94.7	0.0	-0.33	1.53	0.76	0.77	1.60	23543	2808	15	47	7	0	0	logfile
✔	7MW5	24063	2023-07-15	2021-05-15	3.42	3.24	—	2.0	0.004	0.73	0.0	0.05	13.49	0.01	2.140	14.20	0.11	8.0	91.5	0.6	-1.83	0.84	0.79	2.29	2.0	0.003	0.65	0.0	0.05	14.75	0.00	2.152	13.41	0.17	8.2	91.4	0.3	-1.29	1.14	0.84	0.81	1.97	33635	4242	41	0	83	0	0	logfile
✔	7UQX	26701	2023-07-05	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	10.17	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.65	0.0	0.04	14.02	0.00	2.107	13.58	0.39	3.9	96.1	0.0	-0.01	0.96	0.75	0.75	2.88	9491	1154	5	2	5	0	0	logfile
✔	7RZU	24778	2023-07-03	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7WY8	32887	2023-07-04	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.57	0.0	0.04	15.15	0.00	2.173	4.56	2.07	3.2	96.8	0.0	1.11	0.42	0.77	0.78	2.72	8049	1015	5	0	0	0	0	logfile
✔	6UVN	20908	2023-07-13	2019-11-03	3.1	2.62	—	2.0	0.010	0.84	1.0	0.05	14.35	0.00	2.114	19.08	0.52	8.1	91.8	0.1	-3.87	0.89	0.81	2.57	2.0	0.005	0.66	0.0	0.04	15.79	0.00	1.746	14.26	0.23	6.6	93.4	0.0	-1.26	0.48	0.90	0.82	2.32	29487	3461	14	61	83	0	0	logfile
✔	7WY0	32883	2023-07-04	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	8ABL	15325	2023-07-14	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	17.90	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.003	0.62	0.0	0.04	17.53	0.00	2.197	4.21	1.15	1.4	98.6	0.0	1.94	1.31	0.74	0.90	5.69	31660	3878	33	0	32	0	0	logfile
✔	7TU8	26129	2023-07-17	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.81	0.0	0.05	13.32	0.00	1.874	2.75	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	2.0	0.003	0.51	0.0	0.03	16.11	0.00	1.954	3.86	1.02	1.6	98.4	0.0	1.29	0.42	0.83	0.83	3.46	20232	2604	12	0	24	0	0	logfile
✔	7PF1	13364	2023-07-18	2021-08-11	2.1	1.83	—	2.0	0.020	1.66	0.0	0.12	14.32	0.01	1.766	1.25	0.65	1.7	98.3	0.0	1.14	0.71	0.75	6.05	1.8	0.004	0.61	0.0	0.04	17.28	0.00	1.913	10.65	0.00	2.3	97.7	0.0	4.72	1.38	0.78	0.83	6.97	41646	4176	72	0	263	7207	0	logfile
✔	7U66	26361	2023-07-19	2022-03-03	3.1	2.19	3.03	2.0	0.009	0.78	0.0	0.05	14.14	0.00	2.105	2.81	0.92	3.5	96.3	0.2	-0.05	0.78	0.78	3.54	2.0	0.005	0.57	0.0	0.04	15.66	0.00	2.047	3.31	0.42	3.1	96.9	0.0	0.80	1.01	0.80	0.81	2.98	26664	3348	24	0	12	0	0	logfile
✔	5FTJ	3295	2023-07-16	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.005	0.91	0.0	0.05	18.72	0.01	2.036	17.11	2.68	7.2	92.7	0.1	-1.40	1.22	0.47	0.68	1.91	34602	4338	18	0	18	120	0	logfile

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