Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GAQ	8015	2023-08-16	2016-01-05	3.1	3.36	—	3.2	0.006	1.02	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20574	2592	9	0	0	0	0	logfile
✔	3JCP	6575	2023-08-26	2016-01-06	4.6	4.81	—	4.5	0.011	1.30	3.0	0.06	10.56	0.01	1.114	72.15	0.76	11.7	86.7	1.7	-5.00	0.76	0.66	—	4.5	0.004	0.80	0.0	0.04	12.31	0.00	1.994	27.44	0.01	7.8	92.0	0.3	-0.98	0.96	0.85	0.81	—	104170	13367	47	0	0	0	0	logfile
✔	3JCo	6574	2023-08-26	2016-01-06	4.8	5.76	—	4.7	0.012	1.35	4.0	0.06	10.71	0.01	1.268	95.78	0.41	13.5	85.0	1.5	-5.20	0.87	0.76	—	4.7	0.005	0.87	0.0	0.05	12.33	0.01	1.964	38.94	0.01	8.9	90.8	0.4	-1.76	3.09	0.90	0.84	—	104317	13329	47	0	0	0	0	logfile
✔	5Hi9	6580	2023-08-16	2016-01-11	4.4	4.53	—	4.4	0.009	1.46	20.0	0.09	13.13	0.01	2.033	23.50	0.93	7.7	91.4	0.8	-4.25	0.73	0.73	—	4.4	0.003	0.82	0.0	0.04	13.60	0.00	2.101	17.09	0.00	6.9	93.1	0.0	-1.69	2.49	0.75	0.77	—	19636	2408	4	0	0	0	0	logfile
✔	5FTN	3299	2023-08-23	2016-01-14	3.3	2.95	—	2.9	0.012	1.27	0.0	0.07	10.98	0.01	2.234	22.42	0.32	7.4	91.7	1.0	-4.38	0.62	0.80	3.11	2.9	0.004	0.79	0.0	0.05	15.63	0.01	1.866	12.22	0.29	8.9	90.6	0.5	-0.96	1.29	0.63	0.80	2.19	34956	4422	12	0	24	0	0	logfile
✔	5FTL	3297	2023-08-22	2016-01-14	3.3	2.96	—	2.9	0.010	1.12	0.0	0.06	10.70	0.01	2.214	17.11	0.00	6.1	93.2	0.7	-4.22	0.69	0.81	2.28	2.9	0.004	0.77	0.0	0.05	16.09	0.01	2.100	11.61	0.27	5.9	93.9	0.2	-0.86	2.19	0.69	0.81	1.33	34278	4338	12	0	12	0	0	logfile
✔	5FTJ	3295	2023-08-23	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.005	0.91	0.0	0.05	18.72	0.01	2.036	17.11	2.68	7.2	92.7	0.1	-1.40	1.22	0.47	0.68	1.91	34602	4338	18	0	18	120	0	logfile
✔	5FTM	3298	2023-08-23	2016-01-14	3.2	2.96	—	2.9	0.014	1.34	1.0	0.07	11.93	0.02	2.163	23.59	0.51	7.6	91.7	0.7	-4.68	0.71	0.82	2.33	2.9	0.004	0.76	0.0	0.05	16.13	0.00	2.107	12.64	0.43	7.3	92.4	0.3	-1.63	1.29	0.71	0.82	1.52	34554	4368	12	0	18	0	0	logfile
✔	5FTK	3296	2023-08-22	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.01	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.78	0.01	2.112	16.73	4.31	8.6	91.3	0.1	-1.98	1.25	0.50	0.70	1.75	34374	4338	18	0	12	96	0	logfile
✔	3JCS	6583	2023-08-12	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.59	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.87	0.0	0.04	19.74	0.01	1.858	17.70	3.25	10.3	89.7	0.1	-2.53	0.54	0.71	0.80	2.77	117257	5847	74	3420	109	144	0	logfile
✔	5FUU	3308	2023-08-16	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	11.14	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.004	0.85	0.0	0.05	13.02	0.00	2.160	14.08	0.05	6.9	92.6	0.6	-1.30	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	5i68	8072	2023-08-25	2016-02-16	3.37	3.45	—	3.5	0.009	1.47	0.0	0.08	10.36	0.01	1.419	25.74	1.25	5.2	94.8	0.0	-0.41	0.73	0.80	3.74	3.5	0.004	0.71	0.0	0.05	14.93	0.00	2.026	10.90	0.22	2.7	97.3	0.0	-0.16	2.06	0.75	0.86	3.61	42016	5296	8	0	16	0	0	logfile
✔	5FWK	3337	2023-08-19	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.17	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.62	0.0	0.04	14.82	0.00	1.821	11.16	0.28	5.7	94.3	0.0	-0.14	1.24	0.77	0.77	1.68	26221	1612	6	0	4	0	13109	logfile
✘	3JCU	6617	2023-08-18	2016-03-10	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✔	5FYW	3378	2023-08-25	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	17.00	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.004	0.73	0.0	0.04	14.43	0.00	1.973	19.09	0.02	6.2	93.6	0.2	0.12	2.89	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile
✔	5iRX	8117	2023-08-13	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.73	0.0	0.04	16.65	0.00	2.241	8.73	1.73	8.2	91.8	0.0	-0.58	0.68	0.62	0.82	1.93	13162	1726	12	0	20	0	0	logfile
✔	5iRZ	8118	2023-08-13	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.19	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	15.99	0.00	2.158	8.90	0.28	7.1	92.9	0.0	0.91	0.68	0.65	0.84	2.94	12504	1576	8	0	24	0	0	logfile
✔	5iS0	8119	2023-08-12	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.75	0.0	0.04	14.23	0.00	2.152	11.06	0.28	5.4	94.6	0.0	-0.22	1.47	0.63	0.81	2.48	11808	1576	8	0	4	0	0	logfile
✔	5G04	3385	2023-08-13	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.008	0.89	0.0	0.04	18.07	0.00	2.003	19.55	0.83	5.9	93.5	0.6	0.04	1.74	0.84	0.77	0.67	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2023-08-12	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile

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