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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5GAF | 8002 | 2024-03-19 | 2015-11-25 | 4.3 | 4.42 | — | 4.3 | 0.007 | 1.09 | 1.0 | 0.05 | 23.65 | 0.01 | 1.266 | 8.87 | 11.04 | 3.5 | 96.4 | 0.1 | -3.28 | 0.63 | 0.64 | — | 4.3 | 0.004 | 0.66 | 0.0 | 0.03 | 22.68 | 0.01 | 1.057 | 18.83 | 0.03 | 4.3 | 95.5 | 0.2 | -0.84 | 2.00 | 0.71 | 0.84 | — | 96182 | 3889 | 47 | 3049 | 452 | 0 | 0 | logfile |
✔ | 5GAE | 8001 | 2024-03-19 | 2015-11-25 | 3.33 | 3.45 | — | 3.3 | 0.007 | 0.94 | 0.0 | 0.04 | 23.07 | 0.00 | 1.884 | 5.65 | 5.36 | 3.0 | 96.9 | 0.1 | -2.76 | 0.79 | 0.88 | 2.24 | 3.3 | 0.003 | 0.56 | 0.0 | 0.03 | 22.74 | 0.00 | 1.884 | 10.98 | 3.09 | 3.1 | 96.8 | 0.1 | 0.32 | 1.54 | 0.79 | 0.88 | 2.33 | 95192 | 3886 | 41 | 3007 | 349 | 0 | 0 | logfile |
✔ | 5GAH | 8004 | 2024-03-19 | 2015-11-26 | 3.8 | 3.97 | — | 3.9 | 0.008 | 1.10 | 0.0 | 0.05 | 23.75 | 0.01 | 1.737 | 8.30 | 11.31 | 3.3 | 96.7 | 0.1 | -3.33 | 0.73 | 0.85 | 1.12 | 3.9 | 0.006 | 0.67 | 0.0 | 0.04 | 22.93 | 0.01 | 1.161 | 14.34 | 6.31 | 4.3 | 95.6 | 0.1 | -0.67 | 1.15 | 0.74 | 0.87 | 1.44 | 94027 | 3595 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 5GAG | 8003 | 2024-03-19 | 2015-11-26 | 3.8 | 3.95 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 23.62 | 0.00 | 1.789 | 8.16 | 9.03 | 3.0 | 96.9 | 0.1 | -3.35 | 0.79 | 0.90 | 1.98 | 3.8 | 0.005 | 0.64 | 0.0 | 0.04 | 23.09 | 0.00 | 1.005 | 15.18 | 5.48 | 4.1 | 95.8 | 0.1 | -0.62 | 0.65 | 0.78 | 0.88 | 1.93 | 94030 | 3598 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2024-03-24 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 22.77 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.004 | 1.00 | 0.0 | 0.05 | 25.37 | 0.01 | 1.534 | 38.21 | 2.07 | 13.9 | 84.8 | 1.3 | -3.81 | 2.45 | 0.69 | 0.40 | -0.06 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2024-03-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 25.75 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.77 | 0.0 | 0.04 | 24.43 | 0.00 | 1.986 | 20.92 | 2.20 | 8.8 | 90.9 | 0.4 | -2.53 | 1.95 | 0.33 | 0.23 | 0.18 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2024-03-16 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 12.68 | 0.00 | 1.959 | 12.92 | 2.23 | 3.6 | 96.4 | 0.0 | 1.69 | 1.46 | 0.75 | 0.85 | 1.85 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 3JCi | 6555 | 2024-03-19 | 2015-12-13 | 2.9 | 3.14 | — | 3.1 | 0.010 | 0.89 | 0.0 | 0.05 | 8.65 | 0.01 | 2.239 | 18.61 | 0.00 | 2.1 | 97.3 | 0.5 | -2.08 | 0.75 | 0.85 | 5.77 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 15.98 | 0.01 | 2.187 | 7.72 | 2.99 | 3.0 | 97.0 | 0.0 | -0.84 | 0.68 | 0.69 | 0.86 | 5.00 | 93420 | 11400 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAP | 8014 | 2024-03-21 | 2015-12-15 | 3.6 | 3.65 | — | 3.6 | 0.008 | 1.51 | 26.0 | 0.09 | 18.89 | 0.01 | 2.143 | 7.19 | 4.23 | 8.8 | 89.7 | 1.5 | -1.15 | 0.48 | 0.48 | 1.61 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 19.12 | 0.00 | 2.058 | 14.29 | 2.64 | 5.2 | 94.6 | 0.1 | 0.60 | 2.21 | 0.66 | 0.78 | 1.06 | 31576 | 3503 | 12 | 143 | 82 | 0 | 0 | logfile |
✔ | 5GAM | 8011 | 2024-03-17 | 2015-12-15 | 3.7 | 4.03 | — | 3.9 | 0.008 | 1.49 | 11.0 | 0.10 | 22.02 | 0.01 | 1.976 | 11.79 | 6.60 | 10.0 | 88.2 | 1.8 | -2.90 | 0.72 | 0.57 | 1.24 | 3.9 | 0.003 | 0.85 | 0.0 | 0.05 | 21.22 | 0.01 | 2.035 | 17.78 | 4.34 | 7.3 | 92.5 | 0.2 | -0.96 | 1.69 | 0.80 | 0.80 | 1.22 | 19123 | 2002 | 13 | 166 | 19 | 0 | 0 | logfile |
✔ | 3JCJ | 6559 | 2024-03-24 | 2015-12-18 | 3.7 | 3.96 | — | 3.8 | 0.007 | 1.05 | 18.0 | 0.10 | 21.23 | 0.01 | 1.344 | 2.06 | 0.39 | 9.2 | 89.0 | 1.8 | -3.55 | 0.80 | 0.75 | 1.31 | 3.8 | 0.004 | 0.68 | 0.0 | 0.03 | 22.74 | 0.01 | 1.800 | 17.17 | 4.50 | 11.2 | 87.9 | 0.9 | -2.26 | 1.99 | 0.82 | 0.84 | 1.24 | 148347 | 6249 | 82 | 4594 | 197 | 837 | 0 | logfile |
✔ | 3JCL | 6526 | 2024-03-19 | 2015-12-21 | 4.0 | 4.03 | — | 4.0 | 0.018 | 1.83 | 9.0 | 0.09 | 9.75 | 0.01 | 2.379 | 2.74 | 0.00 | 5.2 | 94.3 | 0.6 | -0.72 | 0.71 | 0.74 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 14.38 | 0.00 | 2.182 | 12.38 | 3.16 | 7.5 | 92.5 | 0.0 | -0.28 | 0.95 | 0.69 | 0.68 | — | 24822 | 3201 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCN | 3285 | 2024-03-23 | 2016-01-04 | 4.6 | 4.58 | — | 4.4 | 0.007 | 1.08 | 9.0 | 0.10 | 21.43 | 0.01 | 1.344 | 3.04 | 0.18 | 6.9 | 91.6 | 1.5 | -3.44 | 0.75 | 0.65 | — | 4.4 | 0.005 | 0.76 | 0.0 | 0.04 | 23.06 | 0.01 | 1.966 | 29.08 | 0.04 | 10.9 | 88.6 | 0.5 | -2.45 | 1.60 | 0.81 | 0.79 | — | 147292 | 6123 | 57 | 4638 | 1 | 0 | 0 | logfile |
✔ | 5GAQ | 8015 | 2024-03-18 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | 3.2 | 0.004 | 0.73 | 1.0 | 0.05 | 16.19 | 0.00 | 1.816 | 12.29 | 3.41 | 2.4 | 97.6 | 0.0 | -1.65 | 0.78 | 0.79 | 0.85 | 3.65 | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCo | 6574 | 2024-03-21 | 2016-01-06 | 4.8 | 5.76 | — | 4.7 | 0.012 | 1.35 | 4.0 | 0.06 | 10.71 | 0.01 | 1.268 | 95.78 | 0.41 | 13.5 | 85.0 | 1.5 | -5.20 | 0.87 | 0.76 | — | 4.7 | 0.004 | 0.83 | 0.0 | 0.05 | 12.35 | 0.01 | 1.948 | 34.99 | 0.00 | 8.2 | 91.4 | 0.4 | -1.72 | 3.09 | 0.90 | 0.84 | — | 104317 | 13329 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCP | 6575 | 2024-03-21 | 2016-01-06 | 4.6 | 4.81 | — | 4.5 | 0.011 | 1.30 | 3.0 | 0.06 | 10.56 | 0.01 | 1.114 | 72.15 | 0.76 | 11.7 | 86.7 | 1.7 | -5.00 | 0.76 | 0.66 | — | 4.5 | 0.005 | 0.85 | 0.0 | 0.05 | 12.27 | 0.01 | 1.923 | 31.89 | 0.01 | 8.6 | 91.1 | 0.3 | -1.12 | 0.96 | 0.85 | 0.81 | — | 104170 | 13367 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Hi9 | 6580 | 2024-03-18 | 2016-01-11 | 4.4 | 4.53 | — | 4.4 | 0.009 | 1.46 | 20.0 | 0.09 | 13.13 | 0.01 | 2.033 | 23.50 | 0.93 | 7.7 | 91.4 | 0.8 | -4.25 | 0.73 | 0.73 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.04 | 13.70 | 0.00 | 2.087 | 17.14 | 0.00 | 7.6 | 92.4 | 0.0 | -1.89 | 2.48 | 0.76 | 0.78 | — | 19636 | 2408 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FTM | 3298 | 2024-03-22 | 2016-01-14 | 3.2 | 2.96 | — | 2.9 | 0.014 | 1.34 | 1.0 | 0.07 | 12.08 | 0.02 | 2.163 | 23.59 | 0.51 | 7.6 | 91.7 | 0.7 | -4.68 | 0.71 | 0.82 | 2.33 | 2.9 | 0.004 | 0.76 | 0.0 | 0.05 | 16.36 | 0.01 | 2.099 | 13.03 | 4.77 | 7.7 | 92.0 | 0.3 | -1.35 | 1.27 | 0.71 | 0.82 | 1.62 | 34554 | 4368 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 5FTJ | 3295 | 2024-03-22 | 2016-01-14 | 2.3 | 2.04 | — | 2.0 | 0.010 | 1.30 | 0.0 | 0.07 | 15.43 | 0.01 | 1.862 | 40.83 | 0.81 | 5.7 | 93.3 | 1.0 | -3.32 | 0.42 | 0.65 | 2.67 | 2.0 | 0.004 | 0.82 | 0.0 | 0.05 | 17.67 | 0.00 | 2.040 | 14.33 | 2.98 | 6.9 | 93.1 | 0.0 | -0.98 | 1.17 | 0.47 | 0.68 | 1.64 | 34602 | 4338 | 18 | 0 | 18 | 120 | 0 | logfile |