Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NDY	0443	2023-08-12	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.31	0.00	0.894	11.65	0.52	5.9	94.1	0.0	-0.22	1.30	0.79	0.80	0.84	12531	1596	11	0	20	0	0	logfile
✔	7Yi4	33851	2023-08-18	2022-07-14	3.96	8.09	3.85	2.7	0.004	0.61	0.0	0.04	23.53	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	2.7	0.003	0.58	0.0	0.04	23.86	0.00	2.116	14.04	0.10	3.7	96.3	0.0	1.44	1.60	0.85	0.82	0.23	25351	2359	18	302	5	0	0	logfile
✔	7CHH	30374	2023-08-20	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.16	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.2	0.012	1.23	0.0	0.06	16.28	0.01	1.926	22.20	0.55	8.8	91.2	0.0	-2.20	1.50	0.21	0.15	0.35	29029	3704	17	0	41	0	0	logfile
✔	8GWB	34308	2023-08-17	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.33	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	5VA1	8650	2023-08-15	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	8.09	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.004	0.84	0.0	0.05	15.36	0.00	2.149	21.57	0.27	2.3	97.6	0.1	0.09	2.74	0.66	0.83	0.09	17628	2240	4	0	0	0	0	logfile
✔	6oF2	20040	2023-08-12	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.21	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✔	6RAX	4786	2023-08-25	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.93	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.22	0.00	2.143	13.30	0.36	10.1	89.8	0.0	-2.87	1.49	0.56	0.53	0.28	40970	5062	19	29	6	0	0	logfile
✔	7RZY	24783	2023-08-15	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	14.40	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.5	0.004	0.85	0.0	0.04	17.34	0.01	2.066	15.14	0.58	8.2	91.3	0.6	-1.30	1.41	0.72	0.67	1.20	17458	2177	13	0	7	0	0	logfile
✘	6RBE	4795	2023-08-17	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	7RLJ	24532	2023-08-16	2021-07-23	3.8	4.28	—	3.7	0.004	0.92	0.0	0.05	14.45	0.01	2.067	15.59	0.01	6.2	93.2	0.6	-2.67	0.86	0.79	0.25	3.7	0.005	0.77	0.0	0.05	15.87	0.00	1.879	19.46	0.61	8.1	91.8	0.1	-1.32	1.25	0.88	0.84	0.87	69156	8736	24	0	36	0	0	logfile
✔	7KNi	22950	2023-08-24	2020-11-04	3.91	4.86	4.14	3.9	0.004	0.64	0.0	0.05	14.42	0.01	2.045	4.23	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.003	0.66	0.0	0.05	16.07	0.00	2.090	18.08	0.31	5.3	94.7	0.0	-1.03	1.46	0.84	0.74	0.28	39574	4878	18	0	68	0	0	logfile
✔	6i0Y	0322	2023-08-22	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.007	0.91	0.0	0.04	16.58	0.01	0.967	25.22	1.81	15.5	82.6	1.9	-3.22	1.65	0.61	0.74	0.89	93619	3551	48	3049	144	439	0	logfile
✔	6TA3	10421	2023-08-11	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	17.88	0.01	1.271	29.54	0.58	3.7	96.3	0.0	-0.37	2.45	0.78	0.74	0.54	9491	1201	6	0	5	0	0	logfile
✔	6UE9	20751	2023-08-15	2019-09-20	2.9	3.89	—	4.2	0.007	1.05	0.0	0.06	13.69	0.01	2.241	3.10	0.32	11.2	88.8	0.0	-3.87	0.59	0.37	0.26	3.6	0.004	1.00	0.0	0.05	15.77	0.01	2.138	12.28	4.31	7.3	92.7	0.0	-1.79	1.79	0.78	0.81	1.76	18227	2475	17	0	12	0	0	logfile
✔	8DGi	27423	2023-08-13	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.75	0.0	0.04	16.38	0.00	2.110	20.11	0.53	6.1	93.8	0.1	-0.44	0.60	0.66	0.51	0.27	13580	1690	2	0	0	0	0	logfile
✔	7E9C	31029	2023-08-17	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.005	0.69	0.0	0.04	28.49	0.01	2.118	20.22	1.24	5.0	95.0	0.0	-0.18	1.64	0.83	0.79	0.82	12338	898	11	260	0	0	0	logfile
✔	7RZH	24760	2023-08-14	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.003	0.76	0.0	0.04	16.32	0.00	2.140	16.73	0.24	3.1	96.8	0.1	0.07	3.18	0.71	0.63	0.46	15300	1867	2	0	0	0	0	logfile
✔	5GAK	3227	2023-08-17	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	7UiC	26543	2023-08-15	2022-03-29	3.7	6.93	3.66	3.1	0.002	0.51	0.0	0.04	13.62	0.00	2.212	9.81	0.00	1.0	99.0	0.0	0.41	0.74	0.59	0.28	3.3	0.002	0.68	0.0	0.04	15.13	0.00	2.104	15.60	0.15	2.4	97.5	0.0	0.58	0.65	0.81	0.72	0.01	17303	2138	6	0	0	0	0	logfile
✔	6SPD	10282	2023-08-22	2019-09-01	3.28	3.35	—	3.3	0.010	1.16	0.0	0.06	18.38	0.01	0.400	15.51	1.26	12.2	87.1	0.7	-5.12	0.66	0.50	0.28	3.3	0.008	0.84	0.0	0.04	17.55	0.01	2.004	9.78	1.01	12.5	87.3	0.1	-3.06	2.05	0.87	0.86	1.94	90352	3458	32	2967	0	0	0	logfile

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