Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FJ9	3179	2023-08-24	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	13.04	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.5	0.004	0.91	0.0	0.05	13.50	0.01	1.856	18.56	0.02	13.4	85.4	1.2	-2.47	2.55	0.83	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	5FLM	3218	2023-08-22	2015-10-26	3.4	3.52	—	3.5	0.004	0.74	0.0	0.05	11.28	0.00	2.034	14.71	0.00	5.1	94.9	0.0	-2.61	0.51	0.66	2.61	3.5	0.003	0.64	0.0	0.04	16.17	0.00	1.978	9.76	0.38	5.2	94.7	0.1	0.10	1.53	0.68	0.84	1.69	32712	3896	21	80	9	0	0	logfile
✔	5FLU	3222	2023-08-14	2015-10-28	3.8	3.50	—	3.4	0.009	0.93	0.0	0.05	12.31	0.01	2.213	3.04	0.00	8.7	90.1	1.2	-2.36	0.72	0.64	0.95	3.2	0.003	0.70	0.0	0.04	15.70	0.00	2.142	12.31	0.37	4.7	95.3	0.0	-0.10	1.37	0.77	0.78	1.99	15132	2119	13	0	0	0	0	logfile
✔	5FMG	3231	2023-08-24	2015-11-04	3.6	3.39	—	3.4	0.012	1.50	0.0	0.06	9.27	0.01	2.110	20.79	0.29	5.1	93.8	1.1	-2.35	0.66	0.69	2.91	3.4	0.006	0.82	0.0	0.05	15.01	0.00	2.055	19.68	2.19	5.1	94.9	0.0	-0.65	1.65	0.69	0.73	1.92	39334	5716	30	0	2	0	0	logfile
✔	5FN1	3236	2023-08-11	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.11	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	5FN2	3237	2023-08-11	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	5FN3	3238	2023-08-11	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.83	0.0	0.04	13.92	0.01	2.063	18.67	0.00	8.4	90.6	1.0	-0.49	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN4	3239	2023-08-11	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FN5	3240	2023-08-11	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.003	0.86	0.0	0.04	13.72	0.01	2.178	20.91	0.10	8.6	90.7	0.7	-0.88	1.04	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FNA	3241	2023-08-09	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.004	0.85	0.0	0.04	14.28	0.01	2.153	22.99	0.00	8.4	90.4	1.2	-0.31	2.61	0.49	0.75	—	5328	680	8	0	0	0	0	logfile
✔	5FTJ	3295	2023-08-23	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.005	0.91	0.0	0.05	18.72	0.01	2.036	17.11	2.68	7.2	92.7	0.1	-1.40	1.22	0.47	0.68	1.91	34602	4338	18	0	18	120	0	logfile
✔	5FTK	3296	2023-08-22	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.01	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.78	0.01	2.112	16.73	4.31	8.6	91.3	0.1	-1.98	1.25	0.50	0.70	1.75	34374	4338	18	0	12	96	0	logfile
✔	5FTL	3297	2023-08-22	2016-01-14	3.3	2.96	—	2.9	0.010	1.12	0.0	0.06	10.70	0.01	2.214	17.11	0.00	6.1	93.2	0.7	-4.22	0.69	0.81	2.28	2.9	0.004	0.77	0.0	0.05	16.09	0.01	2.100	11.61	0.27	5.9	93.9	0.2	-0.86	2.19	0.69	0.81	1.33	34278	4338	12	0	12	0	0	logfile
✔	5FTM	3298	2023-08-23	2016-01-14	3.2	2.96	—	2.9	0.014	1.34	1.0	0.07	11.93	0.02	2.163	23.59	0.51	7.6	91.7	0.7	-4.68	0.71	0.82	2.33	2.9	0.004	0.76	0.0	0.05	16.13	0.00	2.107	12.64	0.43	7.3	92.4	0.3	-1.63	1.29	0.71	0.82	1.52	34554	4368	12	0	18	0	0	logfile
✔	5FTN	3299	2023-08-23	2016-01-14	3.3	2.95	—	2.9	0.012	1.27	0.0	0.07	10.98	0.01	2.234	22.42	0.32	7.4	91.7	1.0	-4.38	0.62	0.80	3.11	2.9	0.004	0.79	0.0	0.05	15.63	0.01	1.866	12.22	0.29	8.9	90.6	0.5	-0.96	1.29	0.63	0.80	2.19	34956	4422	12	0	24	0	0	logfile
✔	5FUU	3308	2023-08-16	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	11.14	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.004	0.85	0.0	0.05	13.02	0.00	2.160	14.08	0.05	6.9	92.6	0.6	-1.30	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	5FWK	3337	2023-08-19	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.17	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.62	0.0	0.04	14.82	0.00	1.821	11.16	0.28	5.7	94.3	0.0	-0.14	1.24	0.77	0.77	1.68	26221	1612	6	0	4	0	13109	logfile
✔	5FYW	3378	2023-08-25	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	17.00	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.004	0.73	0.0	0.04	14.43	0.00	1.973	19.09	0.02	6.2	93.6	0.2	0.12	2.89	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile
✔	5G04	3385	2023-08-13	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.008	0.89	0.0	0.04	18.07	0.00	2.003	19.55	0.83	5.9	93.5	0.6	0.04	1.74	0.84	0.77	0.67	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2023-08-12	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile

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