Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UGP	26493	2023-07-12	2022-03-25	4.2	3.87	4.16	3.5	0.006	1.00	1.0	0.07	13.73	0.01	0.835	6.55	0.52	6.7	93.3	0.0	-4.45	0.81	0.72	—	3.5	0.004	0.76	0.0	0.05	13.41	0.00	2.113	13.60	0.04	7.8	92.2	0.0	-2.46	2.10	0.85	0.78	—	25047	3096	34	0	66	0	0	logfile
✔	5T5H	8361	2023-07-19	2016-08-31	2.54	2.84	—	2.9	0.013	1.39	1.0	0.06	17.16	0.05	0.838	36.80	0.69	5.4	93.4	1.2	-2.36	0.64	0.82	3.92	2.9	0.006	1.05	0.0	0.04	18.14	0.01	1.788	15.73	3.27	3.9	96.1	0.1	-0.75	2.19	0.60	0.83	3.14	105112	5369	74	2884	108	83	0	logfile
✔	7UGN	26490	2023-07-12	2022-03-25	3.4	3.60	3.35	3.4	0.004	0.65	0.0	0.19	12.77	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.4	0.006	0.74	0.0	0.05	15.34	0.00	2.166	8.64	0.63	6.6	93.4	0.0	-1.85	1.00	0.84	0.88	2.39	25698	3150	49	0	87	0	0	logfile
✔	4Ui9	2924	2023-07-07	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.07	0.00	2.102	15.06	0.42	5.4	94.2	0.4	0.87	3.18	0.89	0.83	1.17	66453	8472	25	0	5	0	0	logfile
✔	7UiG	26545	2023-07-13	2022-03-29	4.3	8.24	4.32	3.9	0.005	0.80	0.0	0.05	12.88	0.01	0.850	11.11	0.09	1.3	98.5	0.1	1.54	0.45	0.44	—	3.9	0.011	0.85	0.0	0.04	12.99	0.01	2.065	23.76	0.00	3.7	96.3	0.0	0.65	0.85	0.58	0.79	—	27580	3390	17	0	0	0	0	logfile
✔	7Ui9	26542	2023-07-06	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.002	0.60	0.0	0.04	14.79	0.00	2.095	10.75	0.08	2.6	97.4	0.0	1.58	0.50	0.81	0.79	0.66	63137	7857	33	0	0	0	0	logfile
✔	7UiF	26544	2023-07-06	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile
✔	7LF2	23298	2023-07-15	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.53	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.004	0.76	0.0	0.05	12.61	0.00	1.374	21.01	0.27	9.9	90.0	0.1	-2.03	2.49	0.81	0.73	1.81	33798	4452	24	0	12	0	0	logfile
✔	8CXi	27058	2023-07-08	2022-05-21	3.4	3.96	3.26	3.9	0.008	0.97	5.0	0.09	12.96	0.01	0.857	26.16	3.00	9.6	89.7	0.7	-2.57	0.43	0.75	1.93	3.9	0.004	0.76	0.0	0.05	15.60	0.00	2.124	10.87	0.22	10.4	89.5	0.1	-1.18	1.23	0.29	0.73	1.31	16832	2196	12	0	8	0	0	logfile
✔	6GYL	0091	2023-07-18	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.27	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.003	0.78	0.0	0.04	14.55	0.01	2.062	20.07	0.00	6.0	93.7	0.2	-1.26	1.24	0.50	0.18	—	43409	5250	30	112	11	0	0	logfile
✔	6PX3	20517	2023-07-07	2019-07-24	4.1	5.90	—	4.1	0.008	0.94	0.0	0.06	26.81	0.01	0.861	4.63	0.45	4.5	95.5	0.1	-0.93	0.89	0.79	—	4.1	0.004	0.67	0.0	0.04	27.25	0.00	2.136	18.70	0.00	4.5	95.5	0.0	-0.19	2.23	0.90	0.81	—	14323	1059	11	290	3	0	0	logfile
✔	7Z12	14438	2023-07-09	2022-02-24	3.0	3.83	—	3.4	0.007	1.03	1.0	0.06	15.28	0.01	0.865	31.24	1.37	15.0	83.9	1.1	-3.04	0.84	0.81	1.95	3.4	0.004	0.84	0.0	0.05	16.54	0.00	2.111	22.04	1.32	12.8	87.0	0.2	-1.76	0.58	0.83	0.83	1.54	18352	2286	3	0	0	0	0	logfile
✔	5LMo	4074	2023-07-04	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	6GYS	0096	2023-07-17	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	14.94	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.006	0.82	0.0	0.04	15.64	0.01	1.149	29.08	0.00	10.6	89.3	0.0	-1.57	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	4UY8	2773	2023-07-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.003	0.59	0.0	0.03	17.01	0.00	1.696	54.58	0.93	13.2	84.5	2.3	-3.45	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	6ZQF	11362	2023-07-15	2020-07-09	4.9	5.01	—	4.8	0.009	1.42	25.0	0.08	17.00	0.01	0.887	15.97	0.00	6.2	92.3	1.5	-2.85	0.69	0.48	—	4.8	0.004	0.88	0.0	0.05	18.30	0.00	1.961	18.80	0.00	11.7	88.0	0.3	-2.28	1.50	0.81	0.72	—	89582	11884	43	1447	1	0	0	logfile
✔	5ND9	3625	2023-07-16	2017-03-07	3.7	3.83	—	3.7	0.011	1.19	1.0	0.06	15.82	0.01	0.889	8.98	1.12	19.3	80.1	0.6	-5.81	0.76	0.77	1.23	3.9	0.003	0.67	0.0	0.03	15.69	0.01	2.074	16.26	0.80	12.1	87.8	0.0	-2.99	1.33	0.78	0.81	0.84	141051	5461	52	4569	0	0	0	logfile
✔	6N2Z	9334	2023-07-16	2018-11-14	3.0	3.31	3.03	3.3	0.008	1.08	0.0	0.06	10.44	0.01	0.890	9.58	0.51	3.7	96.3	0.1	-2.41	0.64	0.76	3.99	3.2	0.004	0.72	0.0	0.05	14.98	0.00	1.896	11.35	2.46	3.7	96.3	0.0	0.65	1.20	0.62	0.81	3.01	35051	4692	27	0	26	0	0	logfile
✔	6TE9	10477	2023-07-08	2019-11-11	3.58	3.70	—	3.6	0.011	1.32	0.0	0.08	10.50	0.01	0.891	13.02	0.82	9.9	90.0	0.1	-5.43	0.77	0.85	3.48	3.6	0.003	0.77	0.0	0.04	15.44	0.00	2.130	13.99	0.71	6.2	93.8	0.0	-1.36	0.72	0.76	0.85	2.03	66906	8892	42	0	0	0	0	logfile
✔	7RLC	24525	2023-07-16	2021-07-23	3.2	3.75	—	3.2	0.003	0.65	0.0	0.04	9.50	0.00	0.891	7.51	0.00	5.3	94.4	0.3	-1.71	0.83	0.79	1.78	3.2	0.004	0.61	0.0	0.04	11.44	0.00	1.875	6.17	0.11	5.3	94.7	0.0	-0.27	1.28	0.89	0.89	2.42	34980	4422	12	0	24	0	0	logfile

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