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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6R1U | 4705 | 2024-03-17 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.72 | 0.02 | 0.544 | 11.98 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 25.18 | 0.00 | 2.085 | 12.70 | 0.00 | 2.7 | 97.2 | 0.1 | 1.07 | 1.09 | 0.89 | 0.77 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✘ | 8JYM | 36726 | 2024-03-19 | 2023-07-03 | 2.79 | 3.39 | 2.76 | 3.2 | 0.004 | 0.55 | 0.0 | 0.05 | 12.78 | 0.00 | 0.546 | 6.93 | 0.00 | 3.6 | 96.4 | 0.0 | 0.19 | 0.83 | 0.85 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24924 | 3099 | 12 | 0 | 48 | 0 | 0 | logfile |
✔ | 6YAN | 10762 | 2024-03-18 | 2020-03-12 | 3.48 | 3.56 | — | 3.5 | 0.018 | 2.03 | 24.0 | 0.13 | 21.63 | 0.02 | 0.554 | 3.68 | 1.68 | 9.0 | 87.4 | 3.6 | -4.09 | 0.71 | 0.66 | 1.43 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 21.96 | 0.00 | 2.061 | 9.77 | 3.85 | 8.5 | 91.3 | 0.2 | -1.84 | 1.84 | 0.82 | 0.85 | 1.72 | 84251 | 5610 | 39 | 1855 | 0 | 0 | 0 | logfile |
✔ | 6F07 | 4163 | 2024-03-14 | 2017-11-17 | 3.6 | 3.68 | — | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 10.28 | 0.01 | 0.559 | 5.81 | 0.70 | 6.1 | 93.7 | 0.2 | -3.04 | 0.47 | 0.57 | 1.27 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 15.67 | 0.00 | 2.151 | 10.57 | 2.54 | 4.6 | 95.4 | 0.0 | 1.04 | 1.51 | 0.56 | 0.71 | 0.82 | 10149 | 1227 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6SFX | 10162 | 2024-03-18 | 2019-08-02 | 4.0 | 3.90 | 3.75 | 3.9 | 0.012 | 1.02 | 1.0 | 0.06 | 16.15 | 0.01 | 0.560 | 24.26 | 0.14 | 7.7 | 92.0 | 0.3 | -4.75 | 0.73 | 0.74 | — | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 18.15 | 0.00 | 2.056 | 22.23 | 3.83 | 4.8 | 95.2 | 0.0 | -0.78 | 1.49 | 0.74 | 0.76 | — | 20196 | 2602 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TAT | 10427 | 2024-03-11 | 2019-10-30 | 3.7 | 2.79 | — | 2.9 | 0.005 | 0.91 | 0.0 | 0.05 | 15.56 | 0.01 | 0.562 | 5.86 | 0.68 | 6.8 | 93.2 | 0.0 | -4.23 | 0.61 | 0.78 | 2.00 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 18.18 | 0.01 | 2.270 | 6.00 | 1.62 | 5.8 | 94.2 | 0.0 | 0.31 | 0.56 | 0.61 | 0.78 | 1.33 | 6790 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RiB | 4887 | 2024-03-17 | 2019-04-23 | 4.2 | 3.32 | — | 4.0 | 0.008 | 1.12 | 0.0 | 0.06 | 18.48 | 0.00 | 0.563 | 15.47 | 9.09 | 10.1 | 89.9 | 0.0 | -5.68 | 0.73 | 0.66 | — | 3.9 | 0.006 | 0.93 | 0.0 | 0.05 | 14.12 | 0.00 | 2.058 | 24.63 | 0.00 | 19.7 | 80.3 | 0.0 | -5.81 | 1.54 | 0.77 | 0.74 | — | 16368 | 2222 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C5R | 16441 | 2024-03-19 | 2023-01-10 | 3.7 | 3.73 | 3.75 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 8.09 | 0.00 | 0.567 | 18.93 | 0.00 | 3.1 | 96.6 | 0.3 | -3.20 | 0.43 | 0.38 | 0.84 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 13.78 | 0.00 | 2.094 | 13.86 | 2.40 | 5.7 | 94.3 | 0.0 | -1.25 | 1.25 | 0.60 | 0.69 | 1.56 | 24969 | 3178 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PDP | 17617 | 2024-03-21 | 2023-06-12 | 2.9 | 3.05 | 2.91 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 14.90 | 0.00 | 0.568 | 13.90 | 0.00 | 1.4 | 98.6 | 0.0 | 0.66 | 0.73 | 0.81 | 2.73 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 16.37 | 0.00 | 2.152 | 10.56 | 2.03 | 1.8 | 98.2 | 0.0 | 1.78 | 0.48 | 0.71 | 0.83 | 2.77 | 30160 | 3700 | 30 | 70 | 0 | 0 | 0 | logfile |
✔ | 6o6C | 0633 | 2024-03-21 | 2019-03-05 | 3.1 | 3.26 | — | 3.2 | 0.011 | 1.23 | 0.0 | 0.05 | 12.67 | 0.01 | 0.570 | 3.74 | 0.09 | 6.7 | 90.7 | 2.5 | -1.64 | 0.83 | 0.81 | 2.51 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 16.14 | 0.00 | 1.983 | 10.93 | 2.18 | 5.9 | 93.7 | 0.5 | -0.19 | 2.16 | 0.84 | 0.84 | 2.04 | 30166 | 3660 | 19 | 52 | 9 | 0 | 0 | logfile |
✔ | 8SEZ | 40434 | 2024-03-18 | 2023-04-10 | 3.54 | 3.68 | 3.48 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 12.88 | 0.01 | 0.570 | 14.92 | 0.27 | 2.9 | 96.9 | 0.2 | 1.95 | 0.53 | 0.75 | 1.99 | 3.6 | 0.005 | 0.64 | 0.0 | 0.04 | 16.07 | 0.01 | 2.116 | 11.62 | 2.77 | 4.1 | 95.8 | 0.2 | 1.58 | 0.61 | 0.58 | 0.79 | 2.23 | 20580 | 2508 | 8 | 4 | 4 | 0 | 0 | logfile |
✔ | 8SPS | 40683 | 2024-03-17 | 2023-05-03 | 3.0 | 3.64 | 3.06 | 3.4 | 0.008 | 0.88 | 3.0 | 0.05 | 27.01 | 0.01 | 0.574 | 10.67 | 0.53 | 4.6 | 95.3 | 0.1 | -0.87 | 0.84 | 0.82 | 2.70 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 26.70 | 0.00 | 2.188 | 10.66 | 2.22 | 4.1 | 95.9 | 0.0 | 1.73 | 0.70 | 0.84 | 0.85 | 2.52 | 16515 | 1334 | 14 | 294 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2024-03-11 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.51 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.17 | 0.00 | 2.057 | 14.65 | 2.61 | 6.9 | 92.7 | 0.4 | 0.35 | 0.80 | 0.63 | 0.80 | 1.69 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ0 | 20949 | 2024-03-14 | 2019-11-14 | 3.24 | 3.60 | — | 3.6 | 0.022 | 1.38 | 5.0 | 0.18 | 20.23 | 0.01 | 0.584 | 27.88 | 2.73 | 7.5 | 91.5 | 1.0 | -2.63 | 0.48 | 0.76 | 1.87 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 17.88 | 0.00 | 2.163 | 12.28 | 3.56 | 6.7 | 93.1 | 0.3 | 0.08 | 0.64 | 0.45 | 0.76 | 1.18 | 9557 | 1138 | 5 | 0 | 26 | 0 | 0 | logfile |
✔ | 5o4U | 3746 | 2024-03-19 | 2017-05-31 | 4.2 | 4.27 | 4.23 | 4.3 | 0.007 | 1.26 | 2.0 | 0.08 | 11.28 | 0.01 | 0.586 | 15.82 | 1.75 | 17.3 | 82.7 | 0.0 | -4.67 | 0.39 | 0.70 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.05 | 12.43 | 0.01 | 2.128 | 17.51 | 0.04 | 16.1 | 83.9 | 0.0 | -2.91 | 1.33 | 0.44 | 0.74 | — | 24528 | 3312 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N30 | 9335 | 2024-03-22 | 2018-11-14 | 3.2 | 3.45 | 3.17 | 3.4 | 0.011 | 1.27 | 10.0 | 0.07 | 10.94 | 0.01 | 0.590 | 11.87 | 0.78 | 4.1 | 95.8 | 0.2 | -2.69 | 0.63 | 0.73 | 4.10 | 3.4 | 0.004 | 0.73 | 0.0 | 0.05 | 14.17 | 0.00 | 1.894 | 11.28 | 2.81 | 3.9 | 96.0 | 0.0 | 0.44 | 1.19 | 0.71 | 0.85 | 3.15 | 34851 | 4694 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 7PBX | 13308 | 2024-03-11 | 2021-08-02 | 3.43 | 3.70 | 3.43 | 3.1 | 0.032 | 2.53 | 206.0 | 0.21 | 19.43 | 0.02 | 0.597 | 32.75 | 11.71 | 3.1 | 95.3 | 1.6 | 1.29 | 0.69 | 0.65 | 1.83 | 3.2 | 0.003 | 0.75 | 0.0 | 0.04 | 17.10 | 0.00 | 1.907 | 13.75 | 1.35 | 4.6 | 95.3 | 0.1 | 1.35 | 1.42 | 0.90 | 0.86 | 2.10 | 59472 | 8015 | 35 | 0 | 28 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2024-03-14 | 2021-12-20 | 3.8 | 3.89 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.59 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.56 | 0.85 | 2.78 | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 15.23 | 0.01 | 2.190 | 10.00 | 4.97 | 9.6 | 90.4 | 0.0 | -2.96 | 1.54 | 0.56 | 0.85 | 2.86 | 8950 | 1195 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PDR | 17619 | 2024-03-22 | 2023-06-12 | 4.0 | 4.33 | 4.07 | 4.1 | 0.005 | 0.61 | 0.0 | 0.04 | 14.93 | 0.00 | 0.603 | 14.55 | 0.00 | 1.2 | 98.8 | 0.0 | 0.34 | 0.63 | 0.53 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 2.029 | 15.31 | 1.76 | 2.5 | 97.5 | 0.0 | 1.38 | 1.88 | 0.75 | 0.73 | — | 32142 | 3938 | 33 | 77 | 0 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2024-03-12 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.69 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.004 | 0.88 | 3.0 | 0.04 | 17.62 | 0.00 | 1.935 | 18.68 | 4.41 | 4.9 | 94.6 | 0.5 | 0.80 | 1.69 | 0.89 | 0.85 | 1.26 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |