Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A06	15051	2023-07-03	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✔	7RYQ	24745	2023-07-03	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.76	0.0	0.04	14.17	0.01	2.162	16.62	0.00	7.6	92.4	0.0	-0.37	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	5M5H	4155	2023-07-03	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7o6B	12737	2023-07-07	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	7N75	24220	2023-07-04	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.91	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.59	0.0	0.04	14.24	0.00	2.218	7.14	0.71	2.2	97.8	0.0	2.52	0.37	0.66	0.81	2.05	7381	1036	1	0	0	3	0	logfile
✔	7Q5Z	13847	2023-07-05	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.005	0.70	0.0	0.04	14.12	0.00	2.169	16.53	0.43	6.5	93.4	0.2	-0.80	1.18	0.82	0.74	1.50	10489	1344	1	0	0	0	0	logfile
✔	7VLR	32024	2023-07-05	2021-10-05	3.4	3.65	3.41	3.6	0.004	0.61	0.0	0.04	12.64	0.00	2.052	4.29	0.94	1.6	98.4	0.0	1.47	0.70	0.84	1.66	3.6	0.003	0.55	0.0	0.04	15.43	0.00	2.086	7.32	0.10	1.5	98.5	0.0	3.12	1.54	0.65	0.83	1.35	9003	1145	1	0	5	0	0	logfile
✔	7E1A	30938	2023-07-05	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✘	7oE7	12861	2023-07-06	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✔	7N72	24217	2023-07-04	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.10	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.86	0.0	0.04	14.42	0.00	1.683	5.79	0.40	2.4	97.6	0.0	2.13	0.44	0.67	0.83	3.01	7705	1030	1	0	11	5	0	logfile
✔	7PTL	13630	2023-07-11	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	6WBX	21600	2023-07-05	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.49	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.87	3.70	3.7	0.003	0.64	0.0	0.04	13.94	0.00	2.217	6.65	0.00	4.6	95.4	0.0	-1.70	0.41	0.74	0.85	2.73	9170	1264	1	0	2	0	0	logfile
✘	7RAV	24387	2023-07-04	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	6LR0	31583	2023-07-05	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	7E2G	30956	2023-07-04	2021-02-05	3.61	3.75	—	3.7	0.005	0.72	0.0	0.06	13.60	0.00	2.132	13.35	0.14	9.8	90.2	0.0	-2.91	0.62	0.82	1.67	3.7	0.003	0.69	0.0	0.04	15.39	0.00	2.228	8.65	0.82	8.1	91.9	0.0	0.19	0.41	0.62	0.81	1.69	7376	901	1	0	15	0	0	logfile
✘	7S9Y	24941	2023-07-04	2021-09-21	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7395	901	1	0	3	0	0	logfile
✔	8ET9	28589	2023-07-04	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.003	0.58	0.0	0.03	14.29	0.00	1.959	10.28	0.26	3.7	96.3	0.0	0.86	4.56	0.47	0.68	2.12	7685	517	1	0	1	0	3796	logfile
✔	6JNC	9847	2023-07-03	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✔	7LCJ	23275	2023-07-03	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	8E3S	27871	2023-07-03	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.003	0.62	0.0	0.04	15.08	0.00	2.182	10.67	0.00	3.8	96.2	0.0	0.07	1.00	0.78	0.75	2.41	4072	503	1	0	1	0	0	logfile

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