Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTA	12586	2023-04-27	2021-03-09	3.5	3.71	3.63	3.6	0.005	0.69	0.0	0.06	13.87	0.00	2.050	7.05	0.00	4.1	95.9	0.0	-1.38	0.80	0.81	2.51	3.6	0.004	0.63	0.0	0.05	14.84	0.00	1.998	6.06	0.14	4.7	95.3	0.0	-0.91	1.14	0.79	0.81	2.38	26805	3261	34	0	80	89	0	logfile
✔	7AHo	11789	2023-04-22	2020-09-25	4.18	3.69	—	3.9	0.006	0.92	0.0	0.06	15.60	0.01	2.254	6.96	0.21	4.6	95.4	0.0	-5.45	0.72	0.77	—	3.9	0.003	0.68	0.0	0.04	15.02	0.00	2.162	10.76	0.14	3.6	96.4	0.0	-1.73	0.80	0.71	0.76	—	13521	1748	9	0	3	0	0	logfile
✔	6SJ7	10213	2023-04-21	2019-08-12	3.54	3.73	—	3.5	0.010	1.07	1.0	0.06	16.35	0.01	2.280	9.34	0.81	11.3	88.7	0.1	-3.72	0.83	0.80	1.85	3.5	0.003	0.65	0.0	0.04	17.07	0.00	2.166	13.31	0.27	8.0	91.9	0.1	-1.87	0.97	0.83	0.79	1.71	10007	1260	5	0	1	0	0	logfile
✔	7JZ3	22529	2023-04-20	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.50	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	3.0	0.006	0.88	0.0	0.05	16.75	0.00	2.011	16.84	5.94	8.6	91.4	0.0	-2.04	1.63	0.47	0.65	1.61	8142	1038	3	0	0	0	0	logfile
✔	7RZV	24779	2023-04-19	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	6oAY	20005	2023-04-28	2019-03-18	3.3	3.38	—	3.3	0.012	1.19	0.0	0.07	17.27	0.01	1.815	18.01	1.36	9.9	89.6	0.5	-5.50	0.72	0.77	2.04	3.3	0.002	0.69	0.0	0.04	18.05	0.00	2.124	16.15	0.66	5.9	94.0	0.1	-2.13	1.25	0.73	0.79	1.44	27261	3386	13	0	37	0	0	logfile
✔	6QD7	4520	2023-04-23	2019-01-01	3.1	3.30	3.16	3.2	0.009	1.62	12.0	0.09	14.57	0.01	2.233	4.23	4.53	4.7	95.1	0.2	-0.85	0.58	0.67	2.72	3.2	0.004	0.75	0.0	0.05	15.55	0.00	2.099	8.84	0.98	5.8	94.2	0.0	-0.99	1.00	0.62	0.71	2.54	14445	1815	21	0	45	0	0	logfile
✔	7Ao8	11837	2023-04-21	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	16.21	0.01	1.219	8.80	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.002	0.66	0.0	0.04	14.05	0.00	1.997	16.46	0.00	3.1	96.9	0.0	-0.64	2.63	0.85	0.72	—	10905	1350	9	0	8	0	0	logfile
✘	8GNJ	34166	2023-04-20	2022-08-24	3.78	3.60	3.67	3.6	0.012	1.34	0.0	0.07	15.38	0.01	1.811	12.03	0.00	4.6	95.4	0.0	-3.73	0.66	0.81	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5832	746	4	0	1	0	0	logfile
✘	5MLV	3527	2023-04-20	2016-12-07	4.5	4.47	—	4.4	0.010	1.21	0.0	0.06	17.43	0.01	2.060	8.31	0.20	9.0	91.0	0.0	-4.85	0.67	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56928	7218	36	6	24	0	0	logfile
✔	8EG0	28108	2023-04-20	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	11.73	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.004	0.55	0.0	0.04	13.47	0.00	2.195	11.32	0.00	2.3	97.7	0.0	1.60	0.57	0.90	0.85	1.98	6031	584	4	65	0	0	0	logfile
✔	8CZi	27098	2023-04-19	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	6KLS	0716	2023-04-22	2019-07-30	3.3	3.40	3.21	3.4	0.014	1.22	2.0	0.05	18.32	0.03	1.992	14.52	0.69	10.7	89.2	0.1	-3.67	0.66	0.77	2.94	3.4	0.003	0.72	0.0	0.04	17.68	0.00	2.163	10.57	0.15	10.0	89.9	0.1	-0.90	0.46	0.70	0.85	2.63	13011	1530	12	0	17	0	0	logfile
✔	7E3C	30979	2023-04-19	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7EL9	31177	2023-04-28	2021-04-09	3.2	3.41	—	3.4	0.003	0.58	2.0	0.04	14.56	0.00	2.202	11.39	2.99	11.0	88.9	0.1	-3.18	0.71	0.75	2.17	3.3	0.003	0.74	0.0	0.04	16.77	0.00	2.137	15.68	0.23	10.9	89.0	0.1	-1.45	1.15	0.72	0.78	1.69	28128	3560	10	14	10	0	0	logfile
✔	7Lo6	23462	2023-04-24	2021-02-09	3.9	4.03	—	3.8	0.011	0.99	0.0	0.07	14.09	0.01	1.951	19.52	0.64	12.9	87.1	0.0	-5.44	0.85	0.85	2.14	3.8	0.004	0.78	0.0	0.05	15.61	0.00	2.104	12.52	0.53	6.4	93.6	0.0	-2.20	1.65	0.85	0.85	1.73	18006	2198	27	0	62	0	0	logfile
✔	7EoT	31230	2023-04-27	2021-04-22	3.8	4.25	—	4.1	0.003	0.52	2.0	0.04	9.23	0.00	2.074	10.52	2.22	4.2	95.8	0.0	0.02	0.82	0.71	0.77	4.1	0.003	0.67	0.0	0.04	13.90	0.00	2.155	13.79	0.53	5.5	94.4	0.0	-0.76	2.56	0.86	0.78	1.21	24598	3088	8	0	18	0	0	logfile
✘	3JC6	6534	2023-04-26	2015-11-24	3.7	4.01	—	3.9	0.009	1.54	0.0	0.06	12.91	0.01	1.203	39.73	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23732	2953	12	0	1	0	0	logfile
✔	6XE9	22145	2023-04-26	2020-06-12	4.3	5.05	4.38	4.4	0.003	0.50	0.0	0.04	14.92	0.00	2.096	21.22	0.77	5.4	94.6	0.0	-1.78	0.92	0.82	—	4.4	0.003	0.62	0.0	0.04	14.61	0.00	2.026	24.00	0.14	6.1	93.9	0.0	0.47	1.45	0.92	0.83	—	22081	2949	6	0	0	0	0	logfile
✔	7R1B	14237	2023-04-27	2022-02-02	2.8	3.00	2.92	2.9	0.005	0.68	0.0	0.05	12.02	0.00	2.220	3.33	0.54	3.4	96.6	0.0	-0.28	0.73	0.82	3.60	2.9	0.005	0.67	0.0	0.05	14.17	0.00	2.140	5.30	1.65	4.4	95.6	0.0	-0.50	1.13	0.77	0.85	3.45	25554	3193	14	0	42	0	0	logfile

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