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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5H1B | 9566 | 2024-03-11 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 16.13 | 0.01 | 1.503 | 54.25 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 13.69 | 0.00 | 1.920 | 15.92 | 0.13 | 4.7 | 94.4 | 0.9 | 0.57 | 2.98 | 0.64 | 0.82 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 5JXL | 8179 | 2024-03-15 | 2016-05-13 | 3.5 | 3.48 | — | 3.6 | 0.008 | 1.39 | 0.0 | 0.06 | 9.65 | 0.00 | 1.795 | 18.18 | 0.15 | 8.7 | 89.0 | 2.2 | -2.06 | 0.30 | 0.77 | 1.70 | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 15.97 | 0.00 | 2.116 | 13.37 | 5.70 | 7.6 | 92.1 | 0.4 | -1.65 | 1.50 | 0.30 | 0.83 | 2.03 | 69993 | 9361 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F8P | 28932 | 2024-03-16 | 2022-11-22 | 2.26 | 2.19 | 2.27 | 1.9 | 0.004 | 0.83 | 0.0 | 0.05 | 17.73 | 0.01 | 2.301 | 2.96 | 2.04 | 2.7 | 97.3 | 0.0 | -1.31 | 0.72 | 0.85 | 2.89 | 1.8 | 0.006 | 0.65 | 0.0 | 0.05 | 17.08 | 0.00 | 2.015 | 6.43 | 2.49 | 3.7 | 96.3 | 0.0 | 0.05 | 1.16 | 0.74 | 0.88 | 3.79 | 14640 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6VEC | 21155 | 2024-03-10 | 2019-12-31 | 3.9 | 3.99 | — | 3.9 | 0.008 | 1.02 | 0.0 | 0.05 | 10.32 | 0.01 | 1.923 | 3.67 | 0.95 | 7.2 | 92.3 | 0.5 | -3.21 | 0.79 | 0.82 | 2.06 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 13.18 | 0.00 | 1.944 | 9.94 | 1.41 | 6.1 | 93.6 | 0.3 | 0.16 | 1.65 | 0.81 | 0.87 | 1.70 | 53064 | 6721 | 33 | 0 | 22 | 0 | 0 | logfile |
✔ | 7RoC | 24591 | 2024-03-17 | 2021-07-30 | 3.7 | 3.89 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.05 | 11.37 | 0.01 | 2.563 | 18.31 | 0.00 | 5.4 | 94.6 | 0.0 | 3.01 | 0.69 | 0.84 | 1.59 | 3.7 | 0.005 | 0.77 | 0.0 | 0.04 | 14.51 | 0.01 | 2.090 | 9.96 | 2.43 | 5.2 | 94.7 | 0.0 | 3.38 | 1.20 | 0.70 | 0.86 | 1.43 | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ooY | 17033 | 2024-03-10 | 2023-04-06 | 4.0 | 3.79 | 3.92 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 20.02 | 0.00 | 2.016 | 12.57 | 0.79 | 5.1 | 94.9 | 0.0 | -0.97 | 0.81 | 0.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 21.35 | 0.00 | 2.143 | 12.31 | 2.76 | 5.3 | 94.7 | 0.0 | 0.12 | 0.40 | 0.81 | 0.77 | — | 5828 | 604 | 5 | 51 | 1 | 0 | 0 | logfile |
✔ | 8B3Q | 15833 | 2024-03-19 | 2022-09-16 | 2.58 | 3.69 | 2.62 | 3.2 | 0.011 | 1.55 | 0.0 | 0.09 | 14.85 | 0.01 | 2.348 | 13.83 | 0.20 | 0.0 | 100.0 | 0.0 | -1.09 | 0.83 | 0.94 | 3.67 | 3.3 | 0.003 | 0.55 | 0.0 | 0.03 | 17.44 | 0.00 | 2.219 | 4.82 | 2.59 | 0.2 | 99.8 | 0.0 | 6.35 | 2.57 | 0.77 | 0.88 | -0.19 | 25095 | 3395 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i5T | 4418 | 2024-03-16 | 2018-11-14 | 3.9 | 3.96 | — | 3.9 | 0.006 | 1.11 | 0.0 | 0.06 | 10.10 | 0.01 | 2.362 | 4.19 | 0.43 | 15.1 | 84.2 | 0.7 | -5.80 | 0.47 | 0.85 | 3.20 | 3.9 | 0.004 | 0.80 | 0.0 | 0.05 | 14.89 | 0.00 | 2.164 | 9.30 | 4.65 | 13.5 | 85.4 | 1.1 | -3.38 | 1.39 | 0.49 | 0.87 | 2.37 | 13356 | 1734 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i00 | 0320 | 2024-03-20 | 2018-10-24 | 3.4 | 3.52 | — | 3.5 | 0.010 | 1.58 | 25.0 | 0.11 | 11.84 | 0.02 | 2.285 | 7.12 | 2.72 | 16.2 | 83.0 | 0.7 | -5.33 | 0.58 | 0.91 | 4.26 | 3.5 | 0.003 | 0.68 | 0.0 | 0.05 | 15.67 | 0.00 | 2.181 | 7.34 | 4.22 | 11.6 | 88.0 | 0.4 | -2.67 | 3.46 | 0.57 | 0.89 | 2.66 | 26712 | 3468 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oBJ | 20015 | 2024-03-12 | 2019-03-20 | 3.5 | 3.71 | 3.65 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 19.63 | 0.01 | 1.646 | 8.47 | 1.42 | 9.5 | 90.5 | 0.0 | -5.00 | 0.64 | 0.71 | 0.81 | 3.5 | 0.007 | 0.74 | 0.0 | 0.05 | 21.55 | 0.01 | 2.065 | 13.78 | 3.67 | 11.6 | 88.4 | 0.0 | -1.95 | 1.10 | 0.70 | 0.83 | 1.65 | 64060 | 6760 | 60 | 520 | 20 | 0 | 0 | logfile |
✔ | 7BTE | 30177 | 2024-03-16 | 2020-04-01 | 4.2 | 4.34 | — | 4.2 | 0.006 | 0.70 | 0.0 | 0.05 | 15.02 | 0.00 | 1.835 | 13.89 | 13.76 | 12.7 | 87.3 | 0.0 | -5.33 | 0.76 | 0.90 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 12.32 | 0.00 | 1.964 | 10.52 | 0.00 | 5.4 | 94.6 | 0.0 | -1.51 | 1.49 | 0.75 | 0.89 | — | 14814 | 1894 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 8FNi | 29314 | 2024-03-21 | 2022-12-27 | 3.4 | 3.51 | 3.41 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 15.36 | 0.00 | 2.247 | 7.14 | 0.03 | 2.3 | 97.7 | 0.0 | 1.46 | 0.78 | 0.82 | 1.66 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 16.38 | 0.00 | 2.161 | 8.39 | 1.93 | 3.1 | 96.9 | 0.0 | 1.67 | 0.26 | 0.79 | 0.85 | 1.34 | 28858 | 3559 | 11 | 37 | 0 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2024-03-10 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 7.82 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.52 | 0.00 | 2.188 | 8.24 | 3.48 | 7.1 | 92.9 | 0.0 | -3.60 | 3.61 | 0.37 | 0.78 | 3.57 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T6E | 25714 | 2024-03-10 | 2021-12-13 | 3.1 | 3.11 | — | 3.1 | 0.129 | 5.90 | 125.0 | 0.23 | 23.20 | 0.02 | 2.041 | 30.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.87 | — | 3.1 | 0.122 | 5.61 | 134.0 | 0.36 | 21.80 | 0.02 | 2.082 | 31.46 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.66 | 0.90 | — | 3480 | 0 | 60 | 0 | 300 | 0 | 0 | logfile |
✔ | 7Q5A | 13830 | 2024-03-12 | 2021-11-03 | 2.46 | 2.69 | — | 2.6 | 0.012 | 1.10 | 0.0 | 0.06 | 9.54 | 0.00 | 2.247 | 3.06 | 0.00 | 0.0 | 100.0 | 0.0 | 0.99 | 0.66 | 0.84 | 6.72 | 2.6 | 0.055 | 3.97 | 261.0 | 0.21 | 16.64 | 0.02 | 1.937 | 25.81 | 5.71 | 0.0 | 100.0 | 0.0 | 0.81 | 1.64 | 0.67 | 0.86 | 6.31 | 61600 | 5600 | 800 | 0 | 1600 | 0 | 0 | logfile |
✔ | 7QWM | 14189 | 2024-03-10 | 2022-01-25 | 2.76 | 2.21 | 2.47 | 2.2 | 0.012 | 1.93 | 3.0 | 0.11 | 13.26 | 0.01 | 2.502 | 0.15 | 0.00 | 8.0 | 92.0 | 0.0 | -2.89 | 0.34 | 0.80 | 6.86 | 2.2 | 0.004 | 0.68 | 0.0 | 0.05 | 17.24 | 0.00 | 2.109 | 9.54 | 0.79 | 6.3 | 93.7 | 0.0 | -2.85 | 0.51 | 0.37 | 0.82 | 6.28 | 3255 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oAE | 12775 | 2024-03-15 | 2021-04-19 | 2.0 | 2.65 | — | 2.2 | 0.008 | 0.53 | 0.0 | 0.05 | 9.44 | 0.00 | 2.440 | 0.99 | 0.00 | 2.6 | 97.4 | 0.0 | 0.22 | 0.77 | 0.91 | 6.46 | 2.2 | 0.002 | 0.51 | 0.0 | 0.04 | 14.93 | 0.00 | 2.243 | 6.08 | 0.61 | 1.5 | 98.5 | 0.0 | 0.51 | 2.66 | 0.78 | 0.93 | 6.29 | 12768 | 1680 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q8C | 13864 | 2024-03-16 | 2021-11-11 | 2.72 | 2.78 | 2.67 | 2.7 | 0.005 | 0.62 | 0.0 | 0.05 | 10.88 | 0.00 | 1.953 | 1.76 | 0.00 | 3.0 | 97.0 | 0.0 | 0.25 | 0.73 | 0.89 | 5.04 | 2.7 | 0.003 | 0.64 | 0.0 | 0.05 | 15.01 | 0.00 | 1.818 | 2.90 | 1.54 | 3.4 | 96.6 | 0.0 | 0.18 | 0.89 | 0.73 | 0.91 | 4.29 | 14975 | 1850 | 15 | 0 | 10 | 360 | 0 | logfile |
✔ | 7QKJ | 14044 | 2024-03-11 | 2021-12-17 | 3.26 | 3.08 | 3.11 | 3.2 | 0.012 | 2.04 | 12.0 | 0.16 | 11.59 | 0.01 | 2.510 | 0.21 | 0.00 | 9.9 | 90.1 | 0.0 | -2.24 | 0.35 | 0.71 | 3.92 | 3.2 | 0.005 | 0.80 | 0.0 | 0.05 | 15.73 | 0.00 | 2.083 | 10.18 | 2.90 | 7.1 | 92.9 | 0.0 | -2.87 | 1.06 | 0.36 | 0.85 | 2.89 | 6888 | 900 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X84 | 33055 | 2024-03-10 | 2022-03-11 | 3.0 | 3.07 | 2.65 | 3.2 | 0.008 | 0.83 | 0.0 | 0.06 | 13.87 | 0.00 | 2.259 | 11.21 | 0.00 | 10.3 | 89.7 | 0.0 | -5.69 | 0.40 | 0.84 | 3.98 | 3.2 | 0.006 | 0.80 | 0.0 | 0.05 | 17.34 | 0.00 | 2.115 | 11.37 | 3.17 | 7.3 | 92.7 | 0.0 | -3.78 | 0.56 | 0.40 | 0.85 | 3.41 | 3258 | 405 | 3 | 0 | 0 | 0 | 0 | logfile |