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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WL7 | 32576 | 2024-03-15 | 2022-01-12 | 3.51 | 3.41 | — | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 8.84 | 0.00 | 2.214 | 5.97 | 3.39 | 4.6 | 95.3 | 0.1 | -3.63 | 0.79 | 0.77 | 2.09 | 3.5 | 0.003 | 0.78 | 0.0 | 0.04 | 14.17 | 0.00 | 2.187 | 15.74 | 3.57 | 6.7 | 93.3 | 0.1 | 0.16 | 0.86 | 0.79 | 0.79 | 1.70 | 10198 | 1330 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T5o | 25699 | 2024-03-18 | 2021-12-12 | 3.39 | 3.68 | — | 3.5 | 0.007 | 1.38 | 6.0 | 0.08 | 13.25 | 0.01 | 2.295 | 3.59 | 0.00 | 5.1 | 94.9 | 0.0 | -2.90 | 0.56 | 0.47 | 0.35 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.76 | 0.00 | 2.066 | 15.90 | 2.49 | 7.8 | 92.2 | 0.0 | -1.67 | 1.27 | 0.68 | 0.63 | 0.52 | 21263 | 2758 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WP6 | 32676 | 2024-03-11 | 2022-01-23 | 3.81 | 4.11 | — | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 14.82 | 0.01 | 2.224 | 7.27 | 0.69 | 9.4 | 90.4 | 0.1 | -3.82 | 0.70 | 0.79 | 2.25 | 4.1 | 0.004 | 0.76 | 0.0 | 0.04 | 16.71 | 0.00 | 2.170 | 14.85 | 6.58 | 8.4 | 91.5 | 0.1 | -2.09 | 1.30 | 0.70 | 0.79 | 1.56 | 6748 | 861 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7U5U | 26359 | 2024-03-18 | 2022-03-02 | 3.16 | 3.37 | 3.21 | 3.4 | 0.007 | 0.88 | 0.0 | 0.06 | 15.34 | 0.01 | 2.279 | 5.12 | 0.00 | 5.5 | 94.5 | 0.0 | -5.67 | 0.67 | 0.77 | 3.21 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 16.34 | 0.00 | 2.155 | 8.66 | 2.20 | 3.9 | 96.1 | 0.0 | -1.13 | 0.61 | 0.69 | 0.81 | 2.19 | 10035 | 1283 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U5K | 20648 | 2024-03-11 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 12.14 | 0.01 | 2.210 | 5.29 | 3.00 | 7.0 | 93.0 | 0.0 | -5.23 | 0.53 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110106 | 14520 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JMi | 22395 | 2024-03-14 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.47 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 11.41 | 0.01 | 1.586 | 21.66 | 0.00 | 11.8 | 88.0 | 0.2 | -3.52 | 0.81 | 0.81 | 0.69 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7WB5 | 32395 | 2024-03-10 | 2021-12-15 | 3.7 | 3.89 | — | 3.9 | 0.011 | 1.41 | 0.0 | 0.09 | 21.95 | 0.02 | 2.188 | 18.30 | 14.00 | 18.2 | 79.6 | 2.2 | -4.90 | 0.61 | 0.78 | 2.04 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 16.90 | 0.01 | 2.203 | 18.93 | 6.86 | 9.2 | 90.8 | 0.0 | -3.54 | 1.63 | 0.62 | 0.78 | 1.79 | 3256 | 408 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WBH | 32398 | 2024-03-21 | 2021-12-16 | 3.7 | 3.43 | — | 3.3 | 0.006 | 1.13 | 1.0 | 0.07 | 15.48 | 0.01 | 2.310 | 3.14 | 0.06 | 5.3 | 94.6 | 0.0 | -2.71 | 0.71 | 0.77 | 2.28 | 3.4 | 0.005 | 0.71 | 0.0 | 0.05 | 15.05 | 0.00 | 2.109 | 9.62 | 1.72 | 5.4 | 94.5 | 0.0 | -1.04 | 1.22 | 0.72 | 0.78 | 2.31 | 29187 | 3681 | 26 | 0 | 55 | 0 | 0 | logfile |
✔ | 7SHF | 25126 | 2024-03-17 | 2021-10-08 | 3.4 | 3.68 | — | 3.7 | 0.008 | 1.14 | 1.0 | 0.35 | 18.43 | 0.01 | 2.190 | 9.50 | 0.68 | 7.1 | 92.4 | 0.5 | -3.05 | 0.64 | 0.80 | 2.32 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.84 | 0.00 | 2.208 | 6.70 | 1.79 | 5.8 | 93.9 | 0.3 | -1.09 | 1.01 | 0.70 | 0.86 | 1.56 | 11443 | 1326 | 6 | 0 | 24 | 0 | 0 | logfile |
✘ | 6PV6 | 20486 | 2024-03-14 | 2019-07-19 | 4.5 | 5.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.05 | 10.65 | 0.01 | 1.373 | 9.47 | 0.31 | 11.0 | 88.9 | 0.1 | -4.72 | 0.60 | 0.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7LBY | 23267 | 2024-03-15 | 2021-01-09 | 4.2 | 4.35 | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.05 | 12.33 | 0.00 | 2.148 | 4.15 | 0.00 | 6.2 | 92.5 | 1.3 | -0.24 | 0.56 | 0.69 | — | 4.3 | 0.006 | 0.72 | 0.0 | 0.05 | 12.19 | 0.00 | 1.963 | 10.06 | 0.00 | 8.4 | 91.2 | 0.4 | 0.18 | 0.60 | 0.58 | 0.72 | — | 8800 | 1418 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WLE | 32583 | 2024-03-15 | 2022-01-13 | 3.62 | 3.17 | — | 3.3 | 0.003 | 0.50 | 0.0 | 0.04 | 9.91 | 0.00 | 2.240 | 9.09 | 5.25 | 6.1 | 93.9 | 0.0 | -3.62 | 0.78 | 0.75 | 1.67 | 3.4 | 0.004 | 0.76 | 0.0 | 0.04 | 14.84 | 0.00 | 2.141 | 17.17 | 4.09 | 6.5 | 93.5 | 0.0 | -0.72 | 1.41 | 0.80 | 0.78 | 1.76 | 10188 | 1324 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oJQ | 20092 | 2024-03-18 | 2019-04-12 | 3.67 | 3.91 | — | 3.8 | 0.009 | 0.78 | 0.0 | 0.04 | 10.58 | 0.00 | 2.000 | 3.54 | 0.00 | 4.0 | 96.0 | 0.0 | -3.02 | 0.57 | 0.74 | 2.96 | 3.8 | 0.004 | 0.55 | 0.0 | 0.04 | 13.02 | 0.00 | 1.804 | 8.13 | 1.51 | 5.6 | 94.4 | 0.0 | -1.01 | 2.73 | 0.65 | 0.83 | 3.07 | 18055 | 1164 | 5 | 0 | 4 | 0 | 8878 | logfile |
✔ | 7UPL | 26669 | 2024-03-22 | 2022-04-15 | 4.1 | 4.41 | 4.14 | 4.2 | 0.004 | 0.68 | 0.0 | 0.05 | 14.03 | 0.00 | 2.086 | 7.13 | 0.00 | 6.4 | 93.6 | 0.0 | -1.29 | 0.78 | 0.72 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.05 | 13.48 | 0.00 | 2.070 | 7.03 | 0.03 | 4.8 | 95.2 | 0.0 | -1.05 | 0.56 | 0.81 | 0.81 | — | 32145 | 4031 | 23 | 0 | 54 | 0 | 0 | logfile |
✔ | 7LQW | 23490 | 2024-03-19 | 2021-02-15 | 4.47 | 7.28 | 4.96 | 4.6 | 0.003 | 0.79 | 1.0 | 0.05 | 13.53 | 0.00 | 0.911 | 5.63 | 0.12 | 4.6 | 95.4 | 0.1 | -1.27 | 0.78 | 0.64 | — | 4.7 | 0.004 | 0.72 | 0.0 | 0.04 | 13.00 | 0.00 | 2.108 | 24.09 | 0.12 | 8.3 | 91.6 | 0.1 | -1.43 | 1.44 | 0.87 | 0.83 | — | 25332 | 3374 | 8 | 0 | 26 | 0 | 0 | logfile |
✔ | 8SB2 | 40288 | 2024-03-18 | 2023-04-02 | 3.5 | 3.70 | 3.44 | 3.6 | 0.006 | 1.10 | 2.0 | 0.06 | 16.75 | 0.01 | 2.266 | 3.86 | 0.00 | 5.4 | 94.5 | 0.2 | -2.09 | 0.74 | 0.77 | 2.54 | 3.6 | 0.006 | 0.81 | 0.0 | 0.06 | 15.19 | 0.00 | 1.996 | 10.15 | 3.05 | 7.2 | 92.5 | 0.3 | -1.63 | 1.17 | 0.75 | 0.79 | 2.36 | 20186 | 2478 | 27 | 0 | 82 | 0 | 0 | logfile |
✔ | 7oXo | 13102 | 2024-03-16 | 2021-06-22 | 3.9 | 4.39 | — | 4.1 | 0.013 | 1.34 | 0.0 | 0.07 | 13.05 | 0.01 | 1.986 | 8.38 | 0.02 | 9.3 | 90.7 | 0.0 | -2.64 | 0.87 | 0.81 | 1.07 | 4.1 | 0.002 | 0.59 | 0.0 | 0.04 | 13.93 | 0.00 | 1.932 | 9.52 | 0.32 | 4.3 | 95.7 | 0.0 | -0.52 | 1.13 | 0.86 | 0.79 | 0.89 | 74729 | 4656 | 12 | 0 | 6 | 0 | 37715 | logfile |
✔ | 6KHi | 9989 | 2024-03-22 | 2019-07-15 | 3.0 | 3.34 | — | 3.3 | 0.008 | 1.25 | 0.0 | 0.09 | 17.45 | 0.01 | 2.257 | 7.33 | 0.27 | 8.9 | 91.0 | 0.0 | -4.35 | 0.73 | 0.84 | 2.98 | 3.3 | 0.005 | 0.72 | 0.0 | 0.04 | 16.73 | 0.00 | 2.135 | 13.22 | 2.82 | 9.0 | 91.0 | 0.0 | -0.61 | 1.13 | 0.74 | 0.87 | 2.75 | 32635 | 4095 | 29 | 0 | 19 | 0 | 0 | logfile |
✔ | 7XDB | 33142 | 2024-03-21 | 2022-03-26 | 2.62 | 2.82 | 2.70 | 2.8 | 0.004 | 0.64 | 0.0 | 0.05 | 12.33 | 0.01 | 2.111 | 9.82 | 0.00 | 1.9 | 98.1 | 0.0 | 0.54 | 0.69 | 0.83 | 3.23 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 14.50 | 0.00 | 2.125 | 7.65 | 1.06 | 2.3 | 97.7 | 0.0 | 0.34 | 0.42 | 0.69 | 0.86 | 3.25 | 30189 | 3779 | 23 | 0 | 38 | 0 | 0 | logfile |
✔ | 7X1W | 32951 | 2024-03-14 | 2022-02-24 | 3.3 | 3.45 | — | 3.4 | 0.007 | 0.76 | 0.0 | 0.04 | 15.42 | 0.00 | 2.163 | 7.80 | 0.00 | 6.5 | 93.5 | 0.0 | -0.77 | 0.64 | 0.83 | 2.49 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 16.06 | 0.00 | 2.268 | 7.80 | 2.36 | 5.7 | 94.3 | 0.0 | 0.33 | 1.23 | 0.63 | 0.84 | 1.94 | 9315 | 1159 | 4 | 0 | 2 | 0 | 0 | logfile |