Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T9M	25762	2023-07-07	2021-12-19	3.1	4.03	3.21	3.4	0.005	0.88	2.0	0.06	12.71	0.01	2.079	5.13	0.91	4.0	96.0	0.0	0.15	0.70	0.76	3.31	3.4	0.003	0.56	0.0	0.04	13.41	0.00	1.996	8.52	0.34	4.9	95.1	0.0	0.62	0.95	0.70	0.80	3.11	15546	995	5	0	5	0	7719	logfile
✔	7UDS	26458	2023-07-08	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	13.46	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.71	0.0	0.05	15.60	0.00	2.095	11.66	0.54	4.8	95.2	0.0	-0.41	1.13	0.75	0.73	2.24	17032	2094	32	0	53	0	0	logfile
✘	7Z6Q	14528	2023-07-16	2022-03-14	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36557	3956	28	0	91	10	0	logfile
✘	7UT9	26763	2023-07-09	2022-04-26	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20243	2538	18	0	13	60	0	logfile
✔	6DNF	7971	2023-07-07	2018-06-06	3.2	4.05	—	4.0	0.009	1.06	0.0	0.04	9.26	0.01	2.295	2.79	0.00	4.6	95.4	0.0	-1.20	0.59	0.77	2.69	4.0	0.004	0.59	0.0	0.04	14.88	0.00	2.039	8.51	0.56	4.8	95.2	0.0	2.58	1.57	0.55	0.73	2.77	14119	900	8	0	11	0	6868	logfile
✘	7P06	13145	2023-07-10	2021-06-29	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21476	1350	1	0	3	0	10638	logfile
✔	7NiW	12367	2023-07-06	2021-02-14	3.8	3.54	—	3.7	0.015	1.29	0.0	0.07	16.72	0.01	2.078	27.93	2.44	15.5	84.3	0.2	-5.23	0.66	0.80	1.64	3.8	0.004	0.68	0.0	0.04	17.19	0.00	2.077	11.62	0.92	4.7	95.3	0.0	-0.75	1.31	0.63	0.75	1.09	12477	1585	4	0	8	0	0	logfile
✘	7CP9	30421	2023-07-04	2020-08-06	3.0	3.22	—	3.2	0.007	1.24	0.0	0.04	16.75	0.00	2.183	8.57	7.05	6.5	93.5	0.0	-2.50	0.57	0.74	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8530	1021	16	0	11	0	0	logfile
✔	7X0T	32924	2023-07-05	2022-02-22	3.3	3.58	—	3.6	0.010	1.31	3.0	0.09	15.37	0.01	2.217	7.12	1.87	9.9	89.8	0.2	-5.80	0.64	0.81	2.49	3.6	0.003	0.68	0.0	0.04	16.37	0.00	2.281	7.51	0.37	7.6	92.4	0.0	-3.99	0.95	0.62	0.83	1.90	10189	1266	4	0	2	0	0	logfile
✔	7P3N	13181	2023-07-17	2021-07-08	4.6	6.89	—	4.7	0.005	0.85	1.0	0.05	13.74	0.00	1.777	31.13	0.21	7.4	92.4	0.1	-1.16	0.87	0.83	—	4.7	0.003	0.66	0.0	0.04	13.86	0.00	1.912	20.11	0.03	5.0	94.9	0.0	0.08	0.58	0.87	0.83	—	37114	4895	26	0	8	0	0	logfile
✔	7SEF	25067	2023-07-08	2021-09-30	3.55	4.41	3.51	3.5	0.005	0.67	0.0	0.04	10.54	0.00	2.266	3.73	0.00	6.2	93.8	0.0	-2.07	0.90	0.85	1.80	3.6	0.003	0.69	0.0	0.04	11.83	0.00	2.273	11.43	0.11	4.7	95.3	0.0	-1.08	2.68	0.91	0.88	2.90	17154	2256	6	0	0	0	0	logfile
✔	7UX1	26845	2023-07-13	2022-05-04	3.48	2.70	3.65	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.003	0.60	0.0	0.04	13.17	0.00	1.924	7.64	0.57	3.7	96.3	0.0	2.02	0.45	0.77	0.76	1.70	28931	4991	7	0	0	0	0	logfile
✔	7XT6	33440	2023-07-04	2022-05-16	3.63	3.90	3.63	3.9	0.005	0.81	0.0	0.05	16.20	0.01	2.182	8.34	0.81	9.7	90.3	0.0	-2.04	0.69	0.79	2.09	3.9	0.006	0.82	0.0	0.05	16.65	0.01	2.085	8.91	0.81	12.9	87.1	0.0	-1.64	0.42	0.69	0.79	2.20	8040	1003	10	0	21	0	0	logfile
✔	6DZZ	8943	2023-07-04	2018-07-05	3.6	4.03	4.12	4.1	0.017	0.94	0.0	0.17	9.35	0.01	1.715	4.09	0.16	6.0	94.0	0.0	-5.28	0.42	0.68	1.52	4.1	0.004	0.79	0.0	0.04	15.40	0.01	2.161	14.33	0.47	7.5	92.5	0.0	-1.31	3.53	0.48	0.75	2.12	6141	768	5	0	4	0	0	logfile
✔	7UZ8	26882	2023-07-14	2022-05-08	3.1	3.30	3.17	3.3	0.004	0.62	0.0	0.05	13.18	0.00	2.085	10.88	0.06	3.4	96.6	0.0	-0.23	0.68	0.79	3.12	3.3	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.29	0.15	3.2	96.7	0.1	-0.06	0.40	0.69	0.84	2.61	30075	3801	15	0	33	0	0	logfile
✔	7VQ0	32078	2023-07-14	2021-10-18	3.03	3.26	3.14	3.2	0.004	0.59	0.0	0.05	13.95	0.00	2.124	9.20	0.03	4.6	95.3	0.1	-0.40	0.68	0.82	2.50	3.2	0.003	0.55	0.0	0.04	15.88	0.00	2.118	9.40	0.16	4.8	95.1	0.1	-0.37	0.37	0.69	0.85	2.43	29517	3624	35	0	91	0	0	logfile
✔	7PTR	13634	2023-07-15	2021-09-27	3.46	4.28	3.39	3.8	0.002	0.47	0.0	0.04	9.81	0.00	2.195	6.90	0.00	3.0	97.0	0.0	-0.08	0.75	0.80	1.24	3.9	0.002	0.52	0.0	0.04	12.69	0.00	2.112	8.76	0.20	3.2	96.8	0.0	-0.76	0.47	0.75	0.83	1.14	31704	4350	12	0	36	0	0	logfile
✔	7Z31	14470	2023-07-18	2022-03-01	2.76	2.15	—	2.1	0.006	0.70	0.0	0.05	15.67	0.01	1.998	13.10	6.49	7.1	92.9	0.1	-1.15	0.55	0.75	3.18	2.1	0.005	0.70	0.0	0.05	17.45	0.00	1.865	13.93	4.85	6.7	93.2	0.1	-0.96	0.44	0.55	0.78	2.79	40156	5040	25	0	29	1	0	logfile
✘	8CV1	27005	2023-07-07	2022-05-17	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14771	1939	6	0	2	7	0	logfile
✘	8DPN	27639	2023-07-08	2022-07-15	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16067	1998	12	0	8	40	0	logfile

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