The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5W9o | 8790 | 2024-03-22 | 2017-06-23 | 4.5 | 4.59 | 4.45 | 4.5 | 0.013 | 1.66 | 0.0 | 0.08 | 10.49 | 0.01 | 1.325 | 7.98 | 0.08 | 3.9 | 95.4 | 0.7 | 1.29 | 0.73 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GQY | 34203 | 2024-03-14 | 2022-08-31 | 3.4 | 2.82 | 3.40 | 3.6 | 0.005 | 0.66 | 0.0 | 0.04 | 12.58 | 0.00 | 2.117 | 7.22 | 5.67 | 3.6 | 96.4 | 0.0 | -7.14 | 0.69 | 0.86 | 3.37 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 15.24 | 0.00 | 2.166 | 7.01 | 3.78 | 1.9 | 98.1 | 0.0 | -0.71 | 1.38 | 0.66 | 0.86 | 2.02 | 9515 | 1265 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BYP | 16330 | 2024-03-18 | 2022-12-15 | 3.12 | 3.39 | 3.21 | 3.3 | 0.004 | 0.64 | 0.0 | 0.05 | 14.53 | 0.00 | 2.198 | 9.76 | 0.40 | 6.2 | 93.8 | 0.0 | -1.08 | 0.68 | 0.79 | 3.25 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 16.17 | 0.00 | 2.187 | 10.59 | 2.31 | 5.3 | 94.7 | 0.0 | -0.43 | 1.10 | 0.70 | 0.82 | 2.89 | 19836 | 2421 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G8Z | 4362 | 2024-03-16 | 2018-04-10 | 3.66 | 3.88 | 3.72 | 3.8 | 0.005 | 0.77 | 0.0 | 0.04 | 8.70 | 0.00 | 2.362 | 0.22 | 0.00 | 3.8 | 96.2 | 0.0 | -0.63 | 0.66 | 0.79 | 4.14 | 3.8 | 0.002 | 0.54 | 0.0 | 0.04 | 13.74 | 0.00 | 2.178 | 5.17 | 2.09 | 2.9 | 97.1 | 0.0 | 2.60 | 1.66 | 0.70 | 0.84 | 2.62 | 15966 | 1908 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NMN | 12466 | 2024-03-16 | 2021-02-23 | 3.6 | 3.69 | — | 3.7 | 0.010 | 1.16 | 4.0 | 0.08 | 14.03 | 0.01 | 2.361 | 15.56 | 0.88 | 6.0 | 94.0 | 0.0 | -1.43 | 0.67 | 0.83 | 2.39 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.58 | 0.00 | 2.242 | 8.90 | 2.65 | 3.5 | 96.5 | 0.0 | 1.89 | 0.62 | 0.66 | 0.83 | 1.36 | 15436 | 1876 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR7 | 34048 | 2024-03-10 | 2022-08-09 | 3.8 | 4.63 | 4.40 | 4.6 | 0.008 | 1.25 | 1.0 | 0.09 | 25.59 | 0.01 | 2.385 | 7.94 | 4.74 | 16.7 | 83.3 | 0.0 | -5.36 | 0.64 | 0.60 | 0.33 | 4.6 | 0.004 | 0.80 | 0.0 | 0.04 | 25.52 | 0.00 | 2.109 | 23.71 | 8.39 | 23.0 | 77.0 | 0.0 | -3.48 | 1.71 | 0.67 | 0.66 | 0.64 | 5102 | 330 | 7 | 118 | 0 | 0 | 0 | logfile |
✔ | 6J0M | 9764 | 2024-03-15 | 2018-12-24 | 3.9 | 3.79 | — | 3.8 | 0.007 | 0.98 | 0.0 | 0.06 | 15.91 | 0.01 | 2.282 | 6.73 | 0.87 | 5.2 | 94.8 | 0.0 | -4.05 | 0.52 | 0.82 | 1.83 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 18.09 | 0.00 | 2.213 | 12.79 | 5.93 | 6.1 | 93.9 | 0.0 | -2.30 | 1.28 | 0.52 | 0.82 | 1.60 | 12585 | 1605 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-03-15 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LiC | 23372 | 2024-03-15 | 2021-01-26 | 3.3 | 4.38 | — | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 15.15 | 0.01 | 2.261 | 5.27 | 0.90 | 1.4 | 98.6 | 0.0 | -0.82 | 0.72 | 0.79 | 1.06 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 16.75 | 0.00 | 2.073 | 11.86 | 2.69 | 2.1 | 97.9 | 0.0 | 3.24 | 1.31 | 0.68 | 0.77 | 0.80 | 11980 | 1508 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KA3 | 22757 | 2024-03-15 | 2020-09-29 | 3.3 | 3.20 | — | 3.4 | 0.004 | 0.76 | 0.0 | 0.04 | 13.66 | 0.01 | 2.294 | 3.99 | 0.36 | 2.9 | 97.1 | 0.0 | -2.21 | 0.76 | 0.82 | 1.82 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.64 | 0.00 | 2.190 | 6.88 | 1.98 | 3.7 | 96.3 | 0.0 | 1.91 | 0.48 | 0.77 | 0.84 | 1.18 | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DRK | 8901 | 2024-03-22 | 2018-06-12 | 3.8 | 4.29 | — | 4.2 | 0.010 | 1.18 | 4.0 | 0.07 | 9.74 | 0.01 | 2.150 | 5.96 | 0.36 | 5.9 | 94.1 | 0.0 | -3.07 | 0.64 | 0.74 | 1.96 | 4.2 | 0.002 | 0.63 | 0.0 | 0.04 | 13.21 | 0.00 | 2.169 | 4.74 | 3.33 | 4.7 | 95.3 | 0.0 | 0.80 | 0.83 | 0.66 | 0.77 | 1.01 | 33120 | 5060 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QL0 | 14059 | 2024-03-11 | 2021-12-19 | 3.13 | 2.96 | 2.97 | 3.1 | 0.011 | 1.87 | 0.0 | 0.09 | 12.06 | 0.01 | 2.510 | 0.00 | 0.00 | 4.0 | 96.0 | 0.0 | -2.04 | 0.39 | 0.77 | 6.02 | 3.1 | 0.002 | 0.55 | 0.0 | 0.05 | 14.54 | 0.00 | 2.136 | 5.01 | 1.39 | 0.7 | 99.3 | 0.0 | -1.65 | 1.25 | 0.41 | 0.84 | 5.80 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 7M69 | 23691 | 2024-03-18 | 2021-03-25 | 3.42 | 4.12 | 4.11 | 4.1 | 0.006 | 0.87 | 0.0 | 0.04 | 13.25 | 0.01 | 2.304 | 0.82 | 1.29 | 5.1 | 94.9 | 0.0 | -0.08 | 0.52 | 0.70 | 1.11 | 4.1 | 0.004 | 0.62 | 0.0 | 0.04 | 15.82 | 0.00 | 1.980 | 12.32 | 3.60 | 7.1 | 92.9 | 0.0 | 0.39 | 1.03 | 0.53 | 0.73 | 1.02 | 21781 | 1390 | 1 | 0 | 0 | 0 | 10898 | logfile |
✔ | 7EPD | 31238 | 2024-03-17 | 2021-04-26 | 3.9 | 2.74 | — | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 12.27 | 0.00 | 2.232 | 7.06 | 0.00 | 4.0 | 96.0 | 0.0 | -2.46 | 0.69 | 0.63 | 0.57 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.21 | 0.00 | 2.212 | 12.50 | 3.17 | 5.1 | 94.9 | 0.0 | 0.18 | 0.55 | 0.72 | 0.69 | 1.35 | 10710 | 1569 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R92 | 4766 | 2024-03-24 | 2019-04-02 | 4.8 | 6.24 | — | 5.4 | 0.009 | 1.11 | 6.0 | 0.09 | 23.88 | 0.01 | 2.054 | 4.33 | 0.36 | 5.0 | 94.7 | 0.4 | -1.02 | 0.87 | 0.72 | — | 5.4 | 0.005 | 0.74 | 0.0 | 0.06 | 24.44 | 0.00 | 1.876 | 22.26 | 0.00 | 8.5 | 91.4 | 0.1 | -2.09 | 1.37 | 0.88 | 0.74 | — | 40519 | 1974 | 12 | 290 | 0 | 0 | 19019 | logfile |
✔ | 7oo8 | 13007 | 2024-03-16 | 2021-05-26 | 3.7 | 2.99 | 3.39 | 3.0 | 0.003 | 0.40 | 0.0 | 0.04 | 9.89 | 0.00 | 2.286 | 6.45 | 0.00 | 1.9 | 98.1 | 0.0 | 2.79 | 0.65 | 0.79 | 2.44 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 14.67 | 0.00 | 2.274 | 10.31 | 2.30 | 1.4 | 98.6 | 0.0 | 2.50 | 0.42 | 0.65 | 0.79 | 2.17 | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VHM | 31999 | 2024-03-19 | 2021-09-22 | 3.2 | 3.32 | — | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 14.39 | 0.01 | 2.124 | 10.68 | 0.00 | 6.6 | 93.4 | 0.0 | -2.95 | 0.73 | 0.80 | 2.94 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.52 | 0.00 | 2.163 | 9.61 | 1.74 | 7.0 | 93.0 | 0.0 | -1.89 | 0.29 | 0.74 | 0.85 | 2.82 | 24972 | 3237 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RQ3 | 19431 | 2024-03-15 | 2024-01-17 | 3.21 | 3.47 | 3.25 | 3.5 | 0.009 | 0.81 | 0.0 | 0.05 | 14.58 | 0.00 | 2.149 | 9.58 | 0.00 | 6.2 | 93.8 | 0.0 | -0.39 | 0.61 | 0.85 | 2.21 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.39 | 0.00 | 2.225 | 6.42 | 1.58 | 4.2 | 95.8 | 0.0 | 1.78 | 0.73 | 0.53 | 0.80 | 0.98 | 11375 | 1432 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M71 | 30127 | 2024-03-11 | 2020-03-16 | 2.9 | 3.35 | 3.10 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 13.42 | 0.00 | 1.966 | 8.99 | 0.00 | 4.2 | 95.8 | 0.0 | -3.06 | 0.74 | 0.80 | 3.55 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.60 | 0.00 | 2.201 | 9.11 | 1.80 | 3.7 | 96.3 | 0.0 | 0.23 | 1.71 | 0.75 | 0.82 | 3.21 | 8614 | 1085 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |