Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VX1	32167	2023-08-18	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	2.1	0.003	0.65	0.0	0.04	13.20	0.00	2.098	11.64	0.11	3.0	96.9	0.0	-0.65	1.38	0.66	0.64	1.34	25362	3237	3	0	0	0	0	logfile
✔	7E4X	30988	2023-08-18	2021-02-15	3.08	3.19	—	3.1	0.006	0.61	3.0	0.05	13.52	0.00	2.196	9.87	0.00	6.9	92.9	0.2	-3.25	0.79	0.85	3.13	3.1	0.002	0.54	0.0	0.04	15.10	0.00	2.130	8.62	0.08	3.5	96.5	0.0	0.41	0.39	0.79	0.86	2.78	24936	3384	8	0	0	0	0	logfile
✔	6K9Q	9952	2023-08-19	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.55	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.004	0.70	0.0	0.04	14.47	0.00	2.064	17.13	0.59	5.5	94.5	0.0	-1.18	0.57	0.51	0.80	1.98	76902	10451	26	0	0	0	0	logfile
✔	7YKJ	33892	2023-08-09	2022-07-22	3.5	3.71	3.62	3.7	0.013	1.78	1.0	0.09	15.54	0.04	1.761	8.58	2.98	6.6	92.2	1.1	-2.51	0.51	0.72	1.70	3.7	0.003	0.73	0.0	0.05	15.18	0.01	2.124	13.62	0.60	5.2	94.5	0.3	-1.21	0.74	0.53	0.74	1.88	4811	626	4	0	0	0	0	logfile
✔	6T0U	10359	2023-08-13	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.68	0.0	0.05	14.30	0.01	2.273	3.95	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.004	0.56	0.0	0.04	15.71	0.00	2.107	7.80	0.27	3.6	96.4	0.0	0.30	0.59	0.68	0.88	2.91	14176	1695	4	23	0	0	0	logfile
✘	7BP0	30138	2023-08-25	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41388	5244	12	0	0	0	0	logfile
✔	7ZMA	14793	2023-08-15	2022-04-19	2.9	3.20	3.03	3.2	0.003	0.89	11.0	0.17	12.20	0.00	2.013	4.62	0.00	5.5	94.5	0.0	-0.24	0.64	0.73	3.49	3.2	0.005	0.95	12.0	0.18	15.31	0.01	1.860	7.39	1.31	8.0	92.0	0.0	-0.35	0.62	0.68	0.79	3.65	18816	1214	2	0	0	0	9332	logfile
✔	7EBF	31053	2023-08-13	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.003	0.52	0.0	0.04	15.90	0.00	2.270	8.68	2.56	2.9	97.1	0.0	1.11	0.55	0.67	0.81	2.90	13052	1640	4	0	0	0	0	logfile
✔	7VHL	31998	2023-08-18	2021-09-22	3.9	4.06	—	3.9	0.002	0.54	0.0	0.04	13.84	0.00	2.161	11.05	0.14	7.3	92.6	0.1	-1.26	0.82	0.81	1.34	3.9	0.005	0.65	0.0	0.04	15.27	0.00	2.144	15.75	0.21	9.8	90.2	0.1	-1.43	1.09	0.82	0.83	1.18	25462	3263	3	0	0	0	0	logfile
✔	6M02	30028	2023-08-15	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.003	0.69	0.0	0.04	17.04	0.00	2.284	10.32	0.52	4.1	95.9	0.0	-1.79	1.20	0.61	0.71	1.40	18935	2345	7	0	0	0	0	logfile
✔	6UiX	20790	2023-08-26	2019-10-01	3.5	4.38	—	3.7	0.009	0.96	0.0	0.05	13.69	0.01	2.204	8.14	0.00	4.0	96.0	0.0	-3.80	0.68	0.83	1.92	3.7	0.005	0.68	0.0	0.04	14.54	0.00	2.269	13.11	0.42	4.4	95.6	0.0	2.43	1.50	0.68	0.83	1.68	44198	6050	22	0	0	0	0	logfile
✔	6U5H	20646	2023-08-10	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✔	8F25	28807	2023-08-17	2022-11-07	2.6	3.22	2.78	2.9	0.007	0.79	0.0	0.05	12.02	0.00	2.123	4.52	0.00	4.0	96.0	0.0	2.44	0.86	0.89	3.57	2.9	0.005	0.62	2.0	0.05	15.39	0.00	2.087	7.61	0.96	3.4	96.6	0.0	2.49	1.57	0.83	0.89	3.03	70560	9240	60	0	0	0	0	logfile
✔	7LVT	23542	2023-08-15	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.71	0.0	0.04	12.92	0.00	2.206	12.08	0.00	5.2	94.6	0.1	0.10	16.93	0.56	0.46	—	18944	2876	4	0	0	0	0	logfile
✔	6UiV	20788	2023-08-17	2019-10-01	3.3	4.06	—	3.6	0.007	0.89	0.0	0.06	13.35	0.01	2.218	7.15	1.13	4.6	95.4	0.0	-3.51	0.69	0.81	2.55	3.6	0.004	0.60	0.0	0.04	14.46	0.00	2.225	9.46	0.21	3.5	96.5	0.0	2.72	0.56	0.70	0.82	2.09	22902	3157	11	0	0	0	0	logfile
✔	8EK1	28192	2023-08-12	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.003	0.70	0.0	0.04	16.39	0.00	2.148	8.31	0.21	10.3	89.7	0.0	-1.82	1.02	0.80	0.84	2.52	8497	1102	7	0	0	0	0	logfile
✔	6YN6	10850	2023-08-11	2020-04-10	3.28	3.66	3.42	3.7	0.008	0.95	0.0	0.06	13.08	0.01	2.225	7.92	0.81	4.4	95.6	0.0	-1.34	0.70	0.80	2.33	3.6	0.005	0.70	0.0	0.05	15.67	0.00	2.037	13.89	0.59	5.1	94.9	0.0	0.46	0.55	0.72	0.83	1.85	113760	14220	20	0	0	0	0	logfile
✔	7P9U	13266	2023-08-09	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.77	0.0	0.04	16.17	0.00	2.152	13.54	0.93	6.6	93.2	0.2	0.53	0.41	0.52	0.75	0.80	3943	503	2	0	0	0	0	logfile
✔	8GTD	34250	2023-08-20	2022-09-08	4.7	4.27	4.25	4.2	0.014	2.16	0.0	0.00	5.49	0.01	2.285	3.73	0.00	8.4	90.0	1.6	0.41	0.50	0.44	—	4.2	0.004	0.93	0.0	0.00	6.20	0.00	2.228	4.76	0.00	19.1	80.2	0.7	-2.63	1.26	0.52	0.51	—	29580	7392	24	0	0	0	0	logfile
✔	7EPC	31237	2023-08-14	2021-04-26	4.0	3.34	—	3.7	0.002	0.50	0.0	0.04	11.28	0.00	2.295	4.60	0.00	2.5	97.5	0.0	-2.98	0.62	0.48	—	3.7	0.004	0.70	0.0	0.04	14.62	0.00	2.130	9.77	0.19	4.3	95.7	0.0	-0.65	1.67	0.73	0.73	—	11216	1564	2	0	0	0	0	logfile

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