Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DZ7	8931	2023-08-11	2018-07-03	3.89	4.12	—	3.9	0.010	1.25	0.0	0.07	11.48	0.01	2.305	3.57	0.20	11.7	88.3	0.0	-3.82	0.82	0.79	1.93	3.9	0.005	0.76	0.0	0.04	14.46	0.01	2.166	10.76	0.10	10.2	89.8	0.0	0.51	1.33	0.82	0.81	1.81	9284	1148	2	0	0	0	0	logfile
✔	6oY3	20221	2023-08-11	2019-05-14	4.0	4.14	—	4.1	0.009	1.10	0.0	0.06	15.73	0.01	2.285	9.49	0.40	6.9	92.9	0.2	-6.09	0.68	0.81	—	4.1	0.003	0.69	0.0	0.04	16.85	0.00	2.257	8.23	0.20	3.6	96.4	0.1	-1.51	0.51	0.68	0.80	—	9534	1188	4	0	4	0	0	logfile
✔	7PN1	13545	2023-08-11	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.002	0.54	0.0	0.04	14.49	0.00	1.939	7.42	0.18	2.6	97.4	0.0	1.52	0.97	0.60	0.80	0.75	10384	657	1	0	0	0	5237	logfile
✘	8B4o	15851	2023-08-09	2022-09-20	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6156	772	2	0	3	0	0	logfile
✔	7XP5	33365	2023-08-10	2022-05-03	3.08	2.39	3.13	2.1	0.004	0.59	0.0	0.04	12.66	0.00	2.198	8.66	0.00	3.1	96.9	0.0	1.69	0.74	0.75	2.94	2.1	0.005	0.64	0.0	0.04	15.41	0.00	1.995	9.56	0.22	3.4	96.6	0.0	1.55	1.11	0.75	0.78	2.32	8381	1059	5	0	0	0	0	logfile
✔	7T9F	25756	2023-08-13	2021-12-19	3.23	3.51	3.49	3.5	0.004	0.84	0.0	0.09	13.18	0.00	1.988	5.27	0.28	3.6	96.4	0.0	0.16	0.64	0.80	3.49	3.5	0.004	0.61	0.0	0.08	15.00	0.00	1.952	10.32	0.14	4.2	95.8	0.0	1.08	0.97	0.65	0.84	3.27	13640	890	2	0	0	0	6958	logfile
✔	6PQY	20456	2023-08-10	2019-07-10	4.2	5.01	—	4.8	0.007	0.99	0.0	0.06	21.79	0.01	2.225	25.09	0.49	6.8	92.5	0.7	-4.46	0.80	0.78	—	4.8	0.003	0.69	0.0	0.04	21.50	0.00	2.200	16.73	0.00	6.7	93.3	0.0	-1.17	1.31	0.78	0.76	—	8690	920	6	64	0	0	0	logfile
✔	7FiH	31597	2023-08-12	2021-07-31	3.2	2.63	—	3.5	0.005	0.76	1.0	0.05	13.97	0.00	1.962	8.33	0.17	3.3	96.6	0.1	-0.18	0.75	0.71	1.63	3.4	0.005	0.80	0.0	0.05	16.45	0.01	2.099	12.27	1.34	4.5	95.5	0.0	-0.04	1.29	0.79	0.78	2.03	10853	1381	7	0	1	0	0	logfile
✔	8EJL	28186	2023-08-17	2022-09-17	3.9	4.30	3.90	4.1	0.005	0.54	0.0	0.04	11.63	0.00	0.636	9.14	3.04	2.2	97.8	0.0	1.75	0.68	0.85	1.79	4.1	0.004	0.67	0.0	0.04	14.77	0.00	2.108	10.38	0.37	2.3	97.7	0.0	2.24	0.60	0.68	0.85	1.21	22155	3095	30	0	0	0	0	logfile
✔	7FB1	31512	2023-08-18	2021-07-08	3.7	4.45	—	4.1	0.007	0.83	0.0	0.05	14.19	0.00	2.091	22.96	0.07	13.5	86.5	0.0	-4.74	0.84	0.84	1.98	4.1	0.004	0.67	0.0	0.04	15.40	0.00	2.123	15.57	0.15	9.1	90.9	0.0	-1.91	1.43	0.83	0.82	1.91	24168	3094	3	0	0	0	0	logfile
✔	5VA3	8652	2023-08-15	2017-03-24	4.0	6.91	—	6.8	0.008	1.07	0.0	0.06	12.27	0.01	1.727	9.17	1.30	4.8	94.1	1.1	-3.78	0.64	0.74	—	6.8	0.004	0.93	0.0	0.05	15.61	0.00	2.176	23.46	0.38	3.9	95.9	0.2	-0.51	2.03	0.66	0.81	—	17600	2236	4	0	0	0	0	logfile
✔	6VE2	21152	2023-08-21	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.004	0.94	0.0	0.05	7.57	0.00	2.114	14.88	0.00	13.8	86.1	0.1	-3.72	1.19	0.82	0.75	—	30198	6153	21	0	0	0	0	logfile
✔	6ZKQ	11258	2023-08-14	2020-06-30	3.3	3.43	—	3.4	0.009	1.03	0.0	1.03	11.72	0.01	2.210	4.49	0.06	4.3	95.7	0.0	-3.17	0.67	0.87	4.05	3.4	0.009	1.61	0.0	0.31	15.36	0.00	2.116	11.77	0.48	4.1	95.9	0.0	0.39	0.64	0.68	0.88	3.10	67353	8157	71	0	44	0	0	logfile
✔	7UQY	26702	2023-08-11	2022-04-20	3.0	2.33	2.95	2.1	0.003	0.59	0.0	0.04	12.61	0.00	2.197	10.04	0.00	5.0	95.0	0.0	-0.18	0.76	0.70	3.53	2.0	0.003	0.63	0.0	0.04	15.36	0.00	2.110	12.74	1.34	4.0	96.0	0.0	-0.18	0.43	0.76	0.75	2.98	9556	1167	4	1	3	0	0	logfile
✔	7SCK	25037	2023-08-11	2021-09-28	2.8	2.26	2.83	2.1	0.005	0.61	0.0	0.05	10.09	0.00	1.744	9.55	0.36	5.5	94.5	0.0	-0.14	0.75	0.73	3.35	2.1	0.004	0.70	0.0	0.04	15.00	0.00	2.098	13.40	1.62	5.0	95.0	0.0	-0.46	0.56	0.77	0.77	2.72	10250	1240	6	2	9	0	0	logfile
✔	7XP4	33364	2023-08-10	2022-05-03	3.01	2.36	3.08	2.2	0.003	0.58	0.0	0.04	12.47	0.00	2.204	9.62	0.00	2.9	97.0	0.1	0.87	0.75	0.75	2.96	2.2	0.003	0.61	0.0	0.04	15.31	0.00	2.059	10.39	0.65	2.9	97.1	0.0	1.13	1.12	0.76	0.78	2.39	8437	1066	5	0	0	0	0	logfile
✔	6P47	20245	2023-08-12	2019-05-26	3.9	4.13	3.63	4.0	0.007	1.21	2.0	0.07	17.02	0.01	2.243	11.77	3.68	8.8	90.7	0.6	-5.94	0.64	0.76	1.64	4.0	0.004	0.89	0.0	0.05	17.16	0.01	2.065	20.86	0.23	10.0	89.7	0.3	-2.14	0.78	0.64	0.76	1.43	11972	1450	2	0	0	0	0	logfile
✔	6PKW	20368	2023-08-19	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.10	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.003	0.57	0.0	0.04	9.81	0.00	2.240	7.64	0.00	4.9	95.1	0.0	1.63	1.63	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	7Y66	33635	2023-08-12	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.59	0.0	0.04	15.39	0.00	2.213	5.90	1.96	3.0	97.0	0.0	0.77	0.41	0.79	0.81	2.21	8917	1139	6	0	2	0	0	logfile
✔	7BWR	30234	2023-08-13	2020-04-15	3.5	3.82	3.73	3.7	0.008	1.70	4.0	0.08	14.61	0.01	1.442	12.39	1.55	14.2	85.6	0.2	-5.25	0.67	0.81	1.71	3.7	0.003	1.07	0.0	0.04	15.29	0.00	2.184	13.24	0.62	10.7	89.1	0.1	-1.82	0.58	0.67	0.81	1.58	14450	2064	5	0	2	0	0	logfile

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