Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SD5	10149	2023-07-07	2019-07-26	3.1	3.26	3.11	3.2	0.006	0.71	0.0	0.04	15.04	0.00	2.321	8.86	1.39	8.3	91.7	0.0	-5.48	0.67	0.85	3.48	3.3	0.003	0.62	0.0	0.04	16.82	0.00	2.259	12.61	0.95	2.3	97.7	0.0	-1.19	0.62	0.68	0.87	3.20	14212	1936	22	0	0	0	0	logfile
✔	5VMS	8712	2023-07-07	2017-04-28	3.7	4.22	—	4.2	0.007	1.47	12.0	0.07	12.69	0.00	2.234	6.34	0.00	3.2	96.8	0.0	2.06	0.56	0.76	1.80	4.2	0.004	0.77	0.0	0.04	16.46	0.00	2.165	14.25	1.10	2.8	97.2	0.0	2.84	0.86	0.60	0.80	1.41	14916	1936	8	0	12	0	0	logfile
✔	6TTU	10585	2023-07-06	2019-12-30	3.7	3.87	3.69	3.8	0.006	0.88	0.0	0.05	15.10	0.00	1.312	13.58	0.29	9.3	90.7	0.0	-2.77	0.82	0.80	1.42	3.7	0.003	0.66	0.0	0.04	17.04	0.00	2.078	10.66	0.22	6.3	93.7	0.0	-0.02	1.64	0.82	0.80	1.13	12746	1604	9	0	3	0	0	logfile
✔	6TBU	10452	2023-07-07	2019-11-04	3.16	3.52	—	3.4	0.012	1.51	0.0	0.18	14.96	0.00	1.526	5.99	0.00	5.0	94.9	0.1	-1.99	0.72	0.80	3.61	3.4	0.003	0.71	0.0	0.15	15.76	0.00	2.036	11.69	0.54	4.5	95.5	0.0	1.46	0.82	0.70	0.84	2.89	13733	842	3	0	12	0	6645	logfile
✔	6W5M	21543	2023-07-16	2020-03-13	4.6	4.75	—	4.6	0.005	0.68	0.0	0.04	25.33	0.00	1.832	36.97	1.58	5.9	94.1	0.0	-2.98	0.80	0.75	—	4.6	0.004	0.69	0.0	0.04	24.81	0.01	2.094	18.68	0.07	4.1	95.9	0.0	-0.61	1.99	0.81	0.77	—	19574	1729	14	292	0	0	0	logfile
✔	7oCD	12804	2023-07-07	2021-04-26	3.5	3.46	—	3.4	0.009	0.88	0.0	0.04	12.42	0.00	2.132	7.33	0.00	5.3	94.7	0.0	0.37	0.71	0.83	3.26	3.4	0.004	0.59	0.0	0.04	13.82	0.00	2.243	7.67	0.69	3.9	96.1	0.0	1.18	1.18	0.71	0.84	2.69	13624	1920	10	0	10	0	0	logfile
✔	8HiZ	34830	2023-07-03	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile
✔	7oCE	12805	2023-07-09	2021-04-26	3.1	2.79	—	3.0	0.009	1.07	0.0	0.04	14.57	0.00	2.080	4.48	0.00	3.8	96.2	0.0	1.07	0.69	0.79	3.20	3.0	0.003	0.51	0.0	0.04	14.86	0.00	2.175	5.01	0.25	2.6	97.4	0.0	1.89	0.43	0.69	0.84	2.62	18092	2322	16	0	52	0	0	logfile
✔	6KS8	0760	2023-07-05	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	7X05	32917	2023-07-06	2022-02-21	3.9	4.05	—	4.0	0.004	0.52	0.0	0.04	10.09	0.00	2.204	4.61	0.00	4.4	95.6	0.0	2.05	0.68	0.83	1.50	4.0	0.004	0.60	0.0	0.04	14.82	0.00	2.042	7.83	0.80	7.0	93.0	0.0	1.55	2.39	0.69	0.85	1.32	13000	1602	6	2	8	0	0	logfile
✔	7EoQ	31227	2023-07-11	2021-04-22	4.1	4.43	—	4.1	0.002	0.47	0.0	0.04	10.23	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.58	0.0	0.04	11.24	0.00	2.184	12.47	0.00	6.4	93.6	0.0	-0.51	1.21	0.88	0.78	—	24742	3144	8	0	10	0	0	logfile
✔	6V6B	21067	2023-07-05	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	3.9	0.003	0.61	0.0	0.04	16.91	0.00	2.139	6.54	0.20	3.4	96.6	0.1	-0.41	0.59	0.53	0.83	0.72	9115	1111	2	0	0	0	0	logfile
✘	7DK4	30702	2023-07-16	2020-11-23	3.8	3.20	—	3.4	0.003	0.55	0.0	0.04	7.92	0.00	2.106	1.33	0.15	2.8	97.2	0.0	-3.26	0.58	0.47	1.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34707	4470	9	0	0	0	0	logfile
✔	7TVE	26140	2023-07-07	2022-02-04	3.8	4.04	—	4.0	0.005	0.86	0.0	0.05	18.77	0.00	2.213	17.42	3.26	13.4	86.3	0.3	-4.24	0.73	0.69	1.65	4.0	0.003	0.70	0.0	0.04	19.76	0.00	2.166	13.82	0.19	8.9	91.1	0.1	-1.61	0.76	0.75	0.72	1.08	15456	1793	8	54	1	0	0	logfile
✔	7R5M	14331	2023-07-06	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.111	3.04	0.08	1.6	98.4	0.0	1.73	1.36	0.70	0.86	2.07	11295	1491	9	0	0	0	0	logfile
✔	7W84	32351	2023-07-07	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.004	0.88	0.0	0.05	17.57	0.00	2.037	21.38	1.17	12.3	87.7	0.0	-2.02	0.86	0.80	0.79	1.37	7879	995	1	0	0	0	0	logfile
✔	7X2A	32963	2023-07-14	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	6.97	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.004	0.80	0.0	0.05	15.31	0.00	2.027	14.46	2.07	3.8	96.2	0.1	-0.27	1.78	0.82	0.79	2.19	26800	3486	5	0	0	0	0	logfile
✔	6i52	4410	2023-07-03	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.7	0.003	0.80	0.0	0.04	17.74	0.00	2.238	19.96	0.00	10.4	88.9	0.7	-2.46	3.53	0.75	0.57	—	3856	432	4	20	0	0	0	logfile
✔	7R8D	24316	2023-07-04	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.46	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.4	0.004	0.62	0.0	0.04	15.91	0.00	2.226	7.01	0.32	5.2	94.8	0.0	0.41	0.92	0.63	0.87	2.20	8762	1090	4	0	8	0	0	logfile
✔	6D00	7782	2023-07-17	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	3.91	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.3	0.003	0.84	0.0	0.04	15.18	0.00	2.096	16.55	0.52	3.5	96.5	0.0	-0.46	1.60	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile

• ← previous
• Page 7 of 500
• next →