Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZBC	11150	2023-07-09	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7RHG	24460	2023-07-07	2021-07-17	2.88	2.68	—	2.7	0.003	0.57	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.8	0.003	0.49	0.0	0.04	17.08	0.00	2.130	7.79	0.93	1.5	98.5	0.0	2.09	0.33	0.69	0.89	3.75	14753	1790	8	0	4	0	0	logfile
✔	7MiR	23862	2023-07-12	2021-04-17	2.5	2.44	—	2.6	0.003	0.48	0.0	0.04	14.23	0.00	1.947	2.91	0.00	3.2	96.8	0.0	1.82	0.72	0.81	3.71	2.6	0.003	0.49	0.0	0.04	15.91	0.00	1.944	3.49	0.70	3.3	96.7	0.0	1.72	1.14	0.73	0.84	3.52	25745	1603	5	0	5	0	12748	logfile
✔	7STN	25434	2023-07-12	2021-11-14	3.19	3.43	—	3.4	0.008	0.75	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.004	0.49	0.0	0.04	12.77	0.00	2.129	3.31	0.00	4.2	95.8	0.0	1.91	1.29	0.64	0.82	2.88	25188	1580	4	0	10	0	12256	logfile
✔	6MRT	9212	2023-07-03	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7PHR	13427	2023-07-06	2021-08-18	3.08	3.38	—	3.4	0.006	0.77	0.0	0.05	12.63	0.00	2.475	5.22	0.08	2.6	97.4	0.0	-0.08	0.66	0.79	3.56	3.4	0.003	0.49	0.0	0.04	14.68	0.00	2.217	6.19	0.32	2.7	97.3	0.0	0.82	0.40	0.66	0.81	3.26	11511	1443	14	0	6	0	0	logfile
✔	6ZBF	11153	2023-07-09	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.003	0.49	0.0	0.03	15.23	0.00	1.930	5.09	0.00	1.1	98.9	0.0	4.10	2.84	0.85	0.78	1.36	19459	1156	4	0	0	0	9861	logfile
✔	7RXH	24731	2023-07-03	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.49	0.0	0.04	15.67	0.00	2.016	13.47	1.30	3.7	96.3	0.0	2.12	1.67	0.60	0.91	4.20	5631	626	1	0	18	24	48	logfile
✔	7P0Z	13153	2023-07-06	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7ZXN	15011	2023-07-10	2022-05-21	3.06	2.82	3.05	3.1	0.005	0.78	0.0	0.06	13.40	0.02	2.173	11.52	0.00	4.4	95.6	0.0	2.95	0.56	0.79	1.24	3.1	0.003	0.49	0.0	0.04	15.44	0.00	1.843	5.69	0.09	3.6	96.4	0.0	4.03	1.28	0.60	0.86	2.14	20466	1242	12	0	6	0	10278	logfile
✔	8D1M	27135	2023-07-07	2022-05-27	3.11	3.41	3.10	3.4	0.006	0.87	0.0	0.06	15.34	0.00	2.396	12.79	1.18	2.7	97.1	0.3	1.27	0.63	0.86	3.50	3.4	0.002	0.49	0.0	0.04	16.53	0.00	2.258	7.99	0.00	1.8	98.2	0.0	1.40	0.92	0.61	0.87	2.41	15590	1880	5	0	0	0	0	logfile
✔	7T4N	25681	2023-07-04	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	8CUD	26998	2023-07-03	2022-05-17	2.94	2.75	2.95	2.8	0.005	0.67	0.0	0.05	15.61	0.00	2.433	3.10	0.00	1.9	98.1	0.0	1.42	0.49	0.83	1.26	2.8	0.002	0.49	0.0	0.04	17.07	0.00	2.207	4.57	2.22	1.4	98.6	0.0	2.06	0.93	0.48	0.84	1.47	3294	433	1	0	0	2	0	logfile
✔	6DWB	8924	2023-07-09	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	8AYM	15716	2023-07-08	2022-09-02	3.3	3.18	3.15	3.4	0.008	1.27	0.0	0.04	17.30	0.00	2.075	1.59	0.13	2.5	97.5	0.0	-0.77	0.69	0.77	2.81	3.4	0.003	0.49	0.0	0.04	16.57	0.00	2.101	6.75	0.38	2.2	97.8	0.0	1.15	0.64	0.71	0.84	2.76	15962	2008	12	0	28	0	0	logfile
✔	7K0i	22598	2023-07-07	2020-09-04	3.3	3.75	—	3.7	0.005	0.64	0.0	0.05	12.84	0.00	2.222	6.32	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.002	0.49	0.0	0.04	14.17	0.00	2.038	6.09	0.37	2.2	97.8	0.0	0.83	0.30	0.76	0.83	2.45	15366	1954	10	0	6	0	0	logfile
✔	7oo0	13003	2023-07-08	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	12.75	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.002	0.49	0.0	0.04	13.55	0.00	2.304	5.53	0.13	1.4	98.6	0.0	1.58	1.53	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	7MiS	23863	2023-07-12	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✔	8D67	27219	2023-07-06	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.002	0.49	0.0	0.04	15.33	0.00	2.247	4.52	0.22	4.5	95.5	0.0	-0.19	1.17	0.69	0.83	2.67	12570	1540	10	0	0	0	0	logfile
✔	8GHF	40044	2023-07-15	2023-03-10	2.7	3.20	2.86	3.2	0.002	0.60	0.0	0.04	17.84	0.01	2.321	2.83	3.45	2.4	97.6	0.0	-0.85	0.70	0.88	3.69	3.2	0.002	0.49	0.0	0.04	17.28	0.00	2.214	3.82	3.00	3.0	97.0	0.0	0.01	0.31	0.61	0.84	3.89	31920	3568	8	0	200	0	0	logfile

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