Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MEP	23801	2023-08-16	2021-04-07	3.5	3.58	3.45	3.5	0.024	1.74	0.0	0.14	10.44	0.01	2.293	0.94	0.00	1.5	98.5	0.0	0.77	0.71	0.85	3.66	3.5	0.003	0.64	0.0	0.05	15.00	0.00	2.063	7.03	0.35	2.8	97.2	0.0	0.51	1.93	0.70	0.85	2.65	21636	2596	35	0	90	0	0	logfile
✔	7SL1	25188	2023-08-19	2021-10-22	3.4	3.69	—	3.6	0.002	0.60	0.0	0.04	13.62	0.00	2.186	10.54	0.00	7.8	92.0	0.2	-1.04	0.80	0.79	3.27	3.5	0.003	0.62	0.0	0.04	15.46	0.00	2.117	12.23	0.06	8.2	91.8	0.0	-1.07	0.43	0.82	0.85	2.91	13830	1714	6	0	0	0	0	logfile
✔	7L88	23225	2023-08-14	2020-12-31	3.6	3.68	3.49	3.6	0.022	1.73	5.0	0.15	9.94	0.01	2.004	2.37	0.00	2.3	97.7	0.0	0.89	0.71	0.83	3.75	3.6	0.004	0.65	0.0	0.04	14.85	0.00	2.121	7.07	0.20	3.5	96.5	0.0	-0.34	1.25	0.71	0.84	3.07	15634	1677	43	0	314	0	0	logfile
✔	7ZPM	14858	2023-08-15	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.68	0.0	0.04	15.22	0.00	2.137	9.74	1.07	3.4	96.5	0.0	0.72	1.06	0.93	0.91	3.15	19330	2412	6	0	0	0	0	logfile
✔	8HAJ	34592	2023-08-14	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.95	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.62	0.0	0.04	26.56	0.00	2.114	18.46	0.00	2.8	97.2	0.0	1.45	1.61	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	7TJ8	25919	2023-08-11	2022-01-14	3.2	3.59	—	3.5	0.015	1.03	2.0	0.06	15.95	0.01	2.042	6.51	0.80	6.0	93.4	0.7	-2.85	0.58	0.84	3.59	3.5	0.003	0.63	0.0	0.04	16.16	0.00	2.209	3.81	0.09	4.3	95.6	0.1	0.91	1.33	0.56	0.85	2.38	10551	1242	4	0	18	0	0	logfile
✔	7WK2	32556	2023-08-18	2022-01-08	3.1	2.76	—	3.3	0.006	0.84	0.0	0.05	8.84	0.01	1.531	3.68	0.22	3.9	95.9	0.2	-3.00	0.72	0.68	1.17	3.3	0.005	0.79	0.0	0.05	14.91	0.00	2.124	12.06	0.76	4.0	96.0	0.0	-0.56	1.64	0.81	0.80	2.30	24879	3171	3	0	0	0	0	logfile
✔	8HMY	34904	2023-08-12	2022-12-06	2.94	3.24	3.07	3.2	0.005	0.85	3.0	0.05	16.57	0.01	2.137	7.76	7.49	5.5	94.3	0.2	-2.35	0.65	0.74	2.32	3.2	0.005	0.68	0.0	0.04	17.27	0.00	2.015	8.50	5.97	4.8	95.2	0.1	0.19	1.20	0.67	0.80	2.11	11675	1368	7	90	6	0	0	logfile
✔	7K01	22587	2023-08-16	2020-09-02	3.9	4.33	3.91	3.9	0.008	0.85	0.0	0.05	15.05	0.00	2.034	30.22	13.19	14.7	83.6	1.8	-2.01	0.73	0.60	1.26	3.9	0.006	0.80	0.0	0.05	14.82	0.00	2.065	22.10	0.69	11.8	88.0	0.3	-1.20	1.00	0.84	0.83	1.38	21052	2916	10	0	6	0	0	logfile
✔	7RZF	24758	2023-08-14	2021-08-27	3.4	2.25	—	3.5	0.009	1.19	1.0	0.07	12.93	0.01	1.454	14.43	0.41	4.2	95.8	0.0	-4.07	0.65	0.74	2.52	3.5	0.003	0.70	0.0	0.04	15.52	0.00	2.195	10.95	0.12	3.9	96.1	0.0	-0.67	4.10	0.66	0.76	1.75	15584	1902	4	0	0	0	0	logfile
✔	7T9A	25754	2023-08-16	2021-12-18	3.54	3.88	3.56	3.7	0.022	1.74	3.0	0.13	12.01	0.02	2.315	1.30	2.68	3.6	95.7	0.7	0.35	0.80	0.84	3.40	3.7	0.005	0.72	0.0	0.05	13.92	0.00	2.180	8.20	0.18	5.7	94.2	0.1	-0.41	1.26	0.81	0.85	3.17	21517	2598	41	0	96	0	0	logfile
✔	6W6H	21555	2023-08-20	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	9.97	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.003	0.65	0.0	0.04	16.77	0.00	2.179	8.28	0.92	9.1	90.9	0.0	-1.23	1.21	0.83	0.87	1.92	28427	3615	13	0	38	0	0	logfile
✔	7X9W	33084	2023-08-11	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.004	0.64	0.0	0.05	17.40	0.00	2.071	7.90	3.56	2.1	97.9	0.0	-0.73	0.46	0.77	0.84	4.17	59640	7368	72	0	24	48	0	logfile
✔	7KNQ	22954	2023-08-10	2020-11-05	3.4	3.78	—	3.7	0.009	0.92	0.0	0.05	14.56	0.01	2.083	19.58	0.38	11.0	89.0	0.0	-2.88	0.73	0.76	2.09	3.7	0.003	0.70	0.0	0.04	16.02	0.00	2.049	12.91	0.40	5.4	94.6	0.1	-0.89	1.24	0.71	0.76	0.83	37066	4704	8	0	0	0	0	logfile
✔	7RYY	24748	2023-08-14	2021-08-26	4.4	3.68	—	7.0	0.005	1.01	0.0	0.05	11.37	0.01	2.230	5.96	0.59	3.6	96.4	0.0	-4.08	0.63	0.51	—	3.5	0.004	0.81	0.0	0.04	12.68	0.01	2.124	19.08	0.00	5.4	94.6	0.0	-0.19	1.82	0.72	0.73	—	15836	2024	8	0	2	0	0	logfile
✔	7WK6	32560	2023-08-09	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.007	0.94	0.0	0.05	17.87	0.00	2.115	21.26	0.86	5.1	94.9	0.0	-1.19	1.42	0.79	0.79	1.73	6428	791	2	0	0	0	0	logfile
✔	6SKL	10227	2023-08-14	2019-08-16	3.7	3.87	—	3.7	0.013	1.93	50.0	0.11	15.18	0.02	1.901	0.27	0.09	3.3	96.7	0.0	-1.69	0.71	0.72	1.97	3.7	0.004	0.63	0.0	0.04	16.54	0.00	1.787	8.63	0.19	4.0	96.0	0.0	0.38	3.48	0.74	0.78	1.67	118181	7251	24	59	11	0	58997	logfile
✔	7TQD	26066	2023-08-10	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	11.72	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.57	0.0	0.04	14.86	0.00	1.081	4.43	1.21	1.8	98.2	0.0	0.97	2.47	0.81	0.83	3.66	8690	1096	3	0	5	0	0	logfile
✔	7AUA	11926	2023-08-12	2020-11-02	2.93	3.12	—	3.1	0.008	0.64	0.0	0.05	12.69	0.00	1.809	1.92	0.00	3.7	96.3	0.0	-0.20	0.79	0.85	4.78	3.1	0.003	0.55	0.0	0.04	14.95	0.00	2.148	4.70	1.07	2.1	97.9	0.0	0.47	2.19	0.81	0.89	3.57	11300	1372	8	2	14	0	0	logfile
✔	7To3	26028	2023-08-13	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	11.67	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.99	0.00	1.099	4.47	1.10	1.9	98.1	0.0	0.83	1.34	0.82	0.85	4.02	14764	1850	6	0	10	0	0	logfile

• ← previous
• Page 7 of 542
• next →