Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oRG	17123	2023-08-09	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.57	0.0	0.05	17.00	0.00	2.261	1.77	2.63	1.6	98.4	0.0	-2.71	1.18	0.37	0.83	4.10	3966	258	3	0	0	0	2025	logfile
✔	7QWG	14187	2023-08-09	2022-01-25	3.38	3.26	2.98	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.31	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.003	0.71	0.0	0.05	16.77	0.00	2.206	11.21	1.06	10.0	90.0	0.0	-3.54	2.41	0.37	0.83	3.46	3258	405	3	0	0	0	0	logfile
✔	6HRF	0260	2023-08-09	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.52	0.00	2.196	8.66	0.50	6.9	93.1	0.0	-3.41	3.56	0.37	0.78	3.67	3522	462	6	0	0	0	0	logfile
✔	8FUV	29481	2023-08-11	2023-01-18	3.1	3.21	2.89	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.005	0.64	0.0	0.05	14.38	0.01	2.155	6.80	0.28	5.5	94.0	0.4	-0.61	1.17	0.37	0.89	3.77	10170	1368	7	0	0	0	0	logfile
✔	7QWM	14189	2023-08-09	2022-01-25	2.76	2.21	2.47	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.006	0.76	0.0	0.05	18.44	0.00	2.247	10.77	0.79	7.8	92.2	0.0	-2.93	0.60	0.37	0.82	6.36	3255	405	3	0	0	0	0	logfile
✔	7VZF	32227	2023-08-09	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	8oRE	17121	2023-08-09	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.69	0.0	0.05	17.33	0.00	2.218	3.60	1.00	6.7	93.3	0.0	-1.84	3.46	0.37	0.81	5.04	3615	231	3	0	0	0	1845	logfile
✔	7WHN	32505	2023-08-11	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.00	0.00	2.281	5.47	0.10	2.7	97.3	0.0	0.94	0.40	0.37	0.82	2.21	9284	1170	1	0	0	0	0	logfile
✔	7XiZ	33213	2023-08-09	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	7UBB	26437	2023-08-10	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.002	0.60	0.0	0.04	14.50	0.00	2.283	8.83	0.00	1.8	98.2	0.0	-1.07	0.80	0.37	0.54	—	7448	896	8	0	0	0	0	logfile
✔	6H5i	0140	2023-08-09	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	7FG2	31574	2023-08-11	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	7QJW	14024	2023-08-10	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.65	0.00	2.366	4.13	1.01	2.7	97.3	0.0	-1.58	1.60	0.38	0.78	4.37	7032	450	6	0	0	0	3588	logfile
✔	7DNH	30783	2023-08-17	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.16	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.005	0.80	0.0	0.05	16.29	0.01	2.142	15.00	0.66	9.0	91.0	0.0	-2.66	1.31	0.38	0.79	2.02	21788	2762	7	0	0	0	0	logfile
✔	7QK6	14039	2023-08-09	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.59	0.0	0.05	15.99	0.00	2.381	4.46	0.69	5.8	94.2	0.0	-2.24	1.45	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	3J2P	5499	2023-08-11	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	7DNL	30787	2023-08-17	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.63	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.004	0.75	0.0	0.05	13.63	0.01	1.969	18.07	0.04	9.1	90.9	0.0	-2.49	0.75	0.38	0.79	—	21847	2769	7	0	0	0	0	logfile
✔	7ELH	31183	2023-08-12	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.19	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.003	0.51	0.0	0.04	14.69	0.00	1.859	28.25	0.29	3.7	96.3	0.0	1.24	1.15	0.38	0.89	2.53	114995	13378	27	310	1	0	3098	logfile
✔	7X84	33055	2023-08-09	2022-03-11	3.0	3.07	2.65	3.2	0.008	0.83	0.0	0.06	13.87	0.00	2.259	11.21	0.00	10.3	89.7	0.0	-5.69	0.40	0.84	3.98	3.2	0.006	0.87	0.0	0.05	17.70	0.00	2.108	11.83	2.12	10.3	89.7	0.0	-3.79	2.63	0.38	0.84	2.93	3258	405	3	0	0	0	0	logfile
✔	6L31	0816	2023-08-16	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.005	0.86	0.0	0.05	14.12	0.01	1.950	28.23	0.04	12.5	87.4	0.1	-3.26	2.40	0.38	0.72	—	20905	2670	6	0	0	0	0	logfile

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