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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Q2J | 20572 | 2023-12-10 | 2019-08-08 | 4.1 | 4.32 | — | 4.1 | 0.006 | 0.98 | 0.0 | 0.06 | 9.00 | 0.01 | 1.677 | 4.24 | 0.13 | 5.0 | 94.8 | 0.1 | -3.22 | 0.52 | 0.28 | — | 4.2 | 0.006 | 0.93 | 0.0 | 0.05 | 11.84 | 0.01 | 2.093 | 18.21 | 0.00 | 8.1 | 91.9 | 0.0 | -2.21 | 2.38 | 0.69 | 0.61 | — | 13796 | 1738 | 8 | 0 | 22 | 0 | 0 | logfile |
✔ | 7MKM | 23899 | 2023-12-07 | 2021-04-24 | 3.16 | 2.47 | — | 2.2 | 0.003 | 0.79 | 0.0 | 0.05 | 13.04 | 0.01 | 2.177 | 7.69 | 0.00 | 2.8 | 97.2 | 0.0 | -1.30 | 0.52 | 0.58 | 1.72 | 2.0 | 0.003 | 0.74 | 0.0 | 0.04 | 14.69 | 0.00 | 2.237 | 9.93 | 0.00 | 5.5 | 94.5 | 0.0 | -2.09 | 0.59 | 0.53 | 0.61 | 1.62 | 3192 | 406 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7U14 | 26277 | 2023-12-07 | 2022-02-19 | 4.5 | 4.22 | — | 4.6 | 0.006 | 0.94 | 0.0 | 0.07 | 19.58 | 0.00 | 2.369 | 21.08 | 6.30 | 10.5 | 89.5 | 0.0 | -3.07 | 0.30 | 0.52 | — | 4.4 | 0.004 | 0.85 | 0.0 | 0.06 | 15.64 | 0.00 | 2.124 | 14.83 | 0.00 | 11.0 | 89.0 | 0.0 | -3.78 | 1.57 | 0.33 | 0.61 | — | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8BC0 | 15958 | 2023-12-09 | 2022-10-14 | 3.09 | 3.54 | 2.95 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 13.16 | 0.01 | 2.052 | 17.19 | 7.06 | 5.0 | 95.0 | 0.0 | 0.18 | 0.54 | 0.60 | 1.08 | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 15.71 | 0.01 | 2.043 | 25.99 | 0.34 | 6.2 | 93.8 | 0.0 | -0.55 | 0.85 | 0.55 | 0.61 | 1.12 | 10861 | 1316 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8EoJ | 28377 | 2023-12-08 | 2022-10-03 | 3.07 | 3.47 | 3.19 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 11.26 | 0.00 | 2.216 | 7.60 | 3.76 | 4.1 | 95.9 | 0.0 | -1.48 | 0.69 | 0.60 | 0.95 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 14.72 | 0.00 | 2.099 | 17.14 | 1.02 | 4.6 | 95.4 | 0.0 | -0.35 | 1.74 | 0.70 | 0.61 | 0.95 | 9327 | 1219 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DH9 | 27433 | 2023-12-09 | 2022-06-25 | 4.5 | 3.05 | 4.86 | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 12.03 | 0.00 | 2.073 | 13.96 | 0.08 | 2.8 | 96.9 | 0.2 | 0.38 | 0.65 | 0.52 | — | 2.3 | 0.003 | 0.83 | 0.0 | 0.05 | 12.65 | 0.01 | 2.093 | 17.38 | 0.00 | 5.1 | 94.8 | 0.1 | -1.12 | 1.24 | 0.69 | 0.61 | — | 10229 | 1281 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V4L | 31715 | 2023-12-08 | 2021-08-13 | 3.4 | 3.80 | — | 3.8 | 0.005 | 0.82 | 1.0 | 0.06 | 15.20 | 0.01 | 2.102 | 18.13 | 3.71 | 8.8 | 90.6 | 0.5 | -2.60 | 0.55 | 0.55 | 1.34 | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 16.09 | 0.01 | 2.154 | 17.48 | 0.49 | 6.7 | 93.2 | 0.1 | -2.54 | 0.75 | 0.58 | 0.61 | 1.26 | 9345 | 1190 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T25 | 40980 | 2023-12-09 | 2023-06-05 | 3.62 | 3.81 | 3.74 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 18.09 | 0.01 | 2.200 | 10.48 | 0.44 | 4.0 | 96.0 | 0.0 | -0.27 | 0.62 | 0.60 | 0.80 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 18.16 | 0.00 | 2.210 | 9.36 | 0.87 | 3.6 | 96.4 | 0.0 | -0.17 | 0.32 | 0.63 | 0.61 | 0.59 | 6408 | 787 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-12-08 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-12-07 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 15.76 | 0.00 | 2.243 | 15.40 | 0.00 | 10.0 | 88.8 | 1.2 | -1.46 | 2.97 | 0.22 | 0.61 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7CXR | 30495 | 2023-12-07 | 2020-09-02 | 3.4 | 3.32 | 3.43 | 3.7 | 0.007 | 0.87 | 1.0 | 0.06 | 16.56 | 0.00 | 2.199 | 12.99 | 3.39 | 6.6 | 93.1 | 0.3 | -2.27 | 0.52 | 0.54 | 1.33 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 18.18 | 0.00 | 2.283 | 11.73 | 0.00 | 4.1 | 95.9 | 0.0 | 1.92 | 1.57 | 0.59 | 0.62 | 1.16 | 5168 | 614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXT | 28662 | 2023-12-08 | 2022-10-25 | 4.6 | 4.06 | 4.52 | 7.3 | 0.026 | 2.04 | 0.0 | 0.12 | 10.97 | 0.01 | 2.014 | 14.28 | 2.03 | 5.3 | 93.9 | 0.8 | -0.66 | 0.53 | 0.45 | — | 7.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.72 | 0.00 | 2.143 | 16.84 | 0.00 | 7.6 | 92.4 | 0.0 | -0.51 | 1.22 | 0.61 | 0.62 | — | 8846 | 1062 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-12-07 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7E | 28904 | 2023-12-08 | 2022-11-18 | 4.13 | 4.21 | 4.35 | 4.1 | 0.005 | 0.98 | 0.0 | 0.05 | 15.17 | 0.01 | 2.266 | 14.09 | 0.53 | 7.4 | 92.6 | 0.0 | -3.38 | 0.55 | 0.57 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 13.94 | 0.01 | 2.044 | 25.40 | 0.00 | 8.3 | 91.7 | 0.0 | -2.73 | 2.07 | 0.59 | 0.62 | — | 6642 | 814 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2023-12-08 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.13 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.05 | 15.12 | 0.00 | 2.151 | 18.52 | 0.00 | 13.1 | 86.9 | 0.0 | -3.97 | 0.75 | 0.70 | 0.62 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RRA | 24657 | 2023-12-09 | 2021-08-09 | 4.4 | 4.79 | — | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.75 | 0.00 | 2.261 | 9.42 | 0.00 | 3.0 | 97.0 | 0.0 | 1.98 | 0.62 | 0.57 | — | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.95 | 0.00 | 2.142 | 14.85 | 0.00 | 4.1 | 95.9 | 0.0 | 1.58 | 1.89 | 0.65 | 0.62 | — | 9608 | 1204 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2023-12-09 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 14.25 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.003 | 0.86 | 0.0 | 0.05 | 14.48 | 0.01 | 2.097 | 29.34 | 0.00 | 14.3 | 85.5 | 0.2 | -2.95 | 0.86 | 0.84 | 0.62 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 8AJN | 15485 | 2023-12-09 | 2022-07-28 | 3.0 | 3.89 | 3.13 | 2.9 | 0.006 | 0.94 | 0.0 | 0.05 | 12.63 | 0.01 | 2.334 | 1.89 | 0.60 | 3.8 | 96.2 | 0.0 | -1.11 | 0.79 | 0.59 | 0.88 | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 15.73 | 0.00 | 2.147 | 25.23 | 2.09 | 7.6 | 92.4 | 0.0 | -1.58 | 1.57 | 0.83 | 0.62 | 1.14 | 12009 | 1530 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DU8 | 8912 | 2023-12-10 | 2018-06-20 | 3.11 | 3.84 | — | 3.8 | 0.007 | 1.14 | 0.0 | 0.08 | 12.52 | 0.01 | 2.046 | 7.99 | 0.89 | 8.8 | 91.2 | 0.0 | -4.81 | 0.39 | 0.59 | 3.01 | 3.8 | 0.003 | 0.78 | 0.0 | 0.05 | 15.28 | 0.00 | 2.043 | 10.98 | 0.37 | 7.5 | 92.5 | 0.0 | -1.84 | 0.59 | 0.41 | 0.62 | 2.13 | 13380 | 1684 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7UiF | 26544 | 2023-12-09 | 2022-03-29 | 4.6 | 5.63 | 4.34 | 6.7 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.76 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.48 | 0.33 | — | 6.7 | 0.003 | 0.75 | 0.0 | 0.05 | 13.27 | 0.00 | 2.026 | 20.55 | 0.00 | 3.5 | 96.5 | 0.0 | 0.05 | 1.21 | 0.61 | 0.62 | — | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |