Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BZX	30262	2023-08-09	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6KRD	0756	2023-08-11	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	8P83	17540	2023-08-23	2023-05-31	3.87	4.82	3.91	3.8	0.003	0.66	3.0	0.06	4.70	0.00	2.470	0.84	0.00	2.0	97.9	0.1	0.35	0.81	0.58	—	3.8	0.003	0.79	0.0	0.04	5.70	0.01	2.230	9.10	0.00	7.0	93.0	0.0	-1.97	2.83	0.85	0.58	—	35656	7036	4	0	0	0	0	logfile
✔	6ZD0	11172	2023-08-10	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	6RUo	10007	2023-08-27	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	7.99	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.80	0.0	0.05	17.28	0.00	2.059	18.24	0.66	7.0	93.0	0.0	-2.70	2.38	0.67	0.58	0.65	50792	6086	26	93	8	0	0	logfile
✔	5Li4	4052	2023-08-16	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	8CTJ	26992	2023-08-09	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	13.47	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.75	0.0	0.04	13.84	0.00	2.095	14.04	0.00	5.1	94.9	0.0	-0.14	1.80	0.49	0.58	—	3312	401	1	0	1	0	0	logfile
✔	7NCJ	12268	2023-08-12	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.60	1.0	0.05	13.98	0.00	1.897	13.84	0.00	11.2	88.8	0.0	-2.88	1.39	0.69	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7NiV	12366	2023-08-14	2021-02-14	3.6	3.27	—	3.4	0.008	1.04	0.0	0.06	15.42	0.01	2.197	22.51	0.89	9.6	90.3	0.0	-5.19	0.53	0.62	1.53	3.4	0.004	0.70	0.0	0.04	16.43	0.00	2.070	13.57	0.59	6.2	93.8	0.0	-1.30	1.09	0.51	0.58	0.89	15724	2020	6	0	8	0	0	logfile
✔	7R4Q	14314	2023-08-27	2022-02-09	3.6	3.14	—	5.7	0.022	3.26	109.0	0.39	15.97	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.011	1.13	8.0	0.17	15.61	0.01	1.762	27.43	0.44	10.0	90.0	0.0	-2.21	1.76	0.63	0.58	0.35	51420	3414	13	0	43	0	24182	logfile
✔	6Q2N	20575	2023-08-13	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.01	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.81	0.0	0.05	11.58	0.01	2.192	17.37	0.00	9.9	90.1	0.0	-2.55	0.96	0.61	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	6CS1	7579	2023-08-18	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	7D7R	30610	2023-08-10	2020-10-05	4.0	4.04	—	4.0	0.004	0.96	0.0	0.05	14.87	0.01	2.270	5.25	0.36	3.6	96.2	0.2	-3.66	0.51	0.58	—	3.9	0.003	0.85	0.0	0.04	15.86	0.00	2.198	16.53	0.91	3.4	96.6	0.0	0.50	1.32	0.50	0.58	—	7680	1160	2	0	0	0	0	logfile
✔	7JQQ	22441	2023-08-20	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.003	0.78	0.0	0.04	22.83	0.00	1.952	22.64	0.00	9.6	90.4	0.0	-2.18	0.49	0.35	0.58	—	28416	1635	15	705	6	0	0	logfile
✔	6P49	20247	2023-08-11	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.80	0.0	0.04	17.07	0.01	2.120	15.81	0.19	9.8	90.2	0.0	-3.13	1.76	0.54	0.59	0.81	9576	1166	4	0	2	0	0	logfile
✔	7X2V	32972	2023-08-10	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.66	0.0	0.04	14.01	0.00	2.177	11.72	0.21	5.1	94.9	0.0	0.36	0.44	0.62	0.59	0.98	8755	1122	5	0	0	0	0	logfile
✔	6CRZ	7577	2023-08-18	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	6XQB	22288	2023-08-14	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	13.97	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.8	0.003	0.67	0.0	0.04	14.08	0.00	1.948	19.66	0.11	8.7	91.3	0.0	-1.84	1.28	0.76	0.59	0.45	16323	1008	7	15	3	0	7987	logfile
✔	6XS6	22301	2023-08-15	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7LBM	23255	2023-08-18	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.82	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.2	0.006	0.89	0.0	0.05	14.76	0.01	1.897	20.39	0.01	8.8	91.0	0.1	-1.14	1.50	0.61	0.59	—	129277	15887	68	128	19	0	0	logfile

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