Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WAY	32389	2023-07-06	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	17.63	0.00	2.212	5.59	1.31	2.1	97.9	0.0	1.76	0.33	0.89	0.88	2.37	11453	960	4	175	0	0	0	logfile
✔	7PF5	13368	2023-07-07	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	29.08	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.68	0.0	0.03	29.24	0.00	2.129	17.53	0.29	2.5	97.5	0.0	0.77	0.69	0.87	0.81	0.67	13470	843	11	334	0	0	0	logfile
✔	7MVV	24057	2023-07-12	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	7K60	22685	2023-07-10	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.32	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.61	0.0	0.03	27.37	0.00	2.105	10.67	0.36	2.8	97.2	0.0	1.07	0.54	0.76	0.77	1.59	18330	1298	13	394	0	0	0	logfile
✔	7Q49	13799	2023-07-05	2021-10-29	3.72	4.35	3.97	4.2	0.008	1.08	0.0	0.06	13.93	0.01	1.995	6.54	0.19	2.9	97.1	0.0	-1.50	0.67	0.70	2.02	4.2	0.003	0.62	0.0	0.03	16.57	0.00	1.930	7.41	0.38	3.4	96.6	0.0	1.29	0.92	0.66	0.67	1.19	10124	616	8	0	26	1	4788	logfile
✔	7TRF	26088	2023-07-07	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	16.37	0.00	2.206	7.56	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.002	0.55	0.0	0.03	16.65	0.00	2.205	6.85	0.10	3.0	97.0	0.0	1.30	0.66	0.83	0.82	1.63	13581	1106	5	224	0	0	0	logfile
✔	8A93	15267	2023-07-04	2022-06-27	3.05	3.59	3.21	3.4	0.005	0.57	0.0	0.04	18.24	0.00	2.072	4.02	0.64	3.4	96.6	0.0	1.45	0.73	0.86	2.30	3.4	0.002	0.50	0.0	0.03	19.19	0.00	1.989	5.13	0.64	2.9	97.1	0.0	1.63	0.90	0.71	0.86	2.07	7353	828	9	44	4	0	0	logfile
✔	7XZY	33534	2023-07-06	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	28.02	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.004	0.70	0.0	0.03	28.73	0.00	2.040	9.85	0.63	3.6	96.4	0.0	1.77	2.26	0.92	0.88	0.97	12821	762	10	330	0	0	0	logfile
✔	7ZF1	14694	2023-07-04	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.56	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.55	0.0	0.03	16.86	0.00	1.988	10.78	0.00	3.2	96.8	0.0	1.54	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	6NoG	0468	2023-07-10	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	7XFi	33173	2023-07-06	2022-04-01	2.9	2.81	3.01	2.9	0.006	0.76	0.0	0.04	27.73	0.01	2.349	2.11	0.00	1.5	98.5	0.0	-0.78	0.72	0.76	3.48	2.9	0.004	0.58	0.0	0.03	29.07	0.00	2.152	7.01	1.28	1.4	98.6	0.0	1.82	1.17	0.78	0.84	3.27	11524	751	10	271	1	0	0	logfile
✔	8CZi	27098	2023-07-03	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	7QA8	13880	2023-07-04	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	14.61	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.002	0.61	0.0	0.03	16.34	0.00	2.228	4.64	3.55	3.3	96.7	0.0	2.93	0.41	0.59	0.80	2.30	6111	622	11	0	38	70	0	logfile
✔	7RZU	24778	2023-07-03	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	8EQU	28546	2023-07-04	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	12.39	0.00	2.317	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.61	0.0	0.03	14.52	0.00	2.138	7.45	3.04	1.7	98.3	0.0	0.23	1.09	0.68	0.83	2.86	5764	542	10	0	318	0	0	logfile
✔	6WCC	21606	2023-07-06	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.004	0.54	0.0	0.03	15.79	0.00	2.165	7.14	0.32	2.8	97.2	0.0	3.98	1.30	0.51	0.78	1.96	11629	734	6	0	5	12	5908	logfile
✔	7RZQ	24774	2023-07-03	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	8ATF	15647	2023-07-08	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	24.98	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.88	0.00	2.235	6.93	0.00	1.8	98.2	0.0	1.86	2.25	0.78	0.85	1.65	15719	1219	13	286	1	0	0	logfile
✔	7VVU	32148	2023-07-15	2021-11-09	3.4	4.41	—	3.4	0.006	0.75	0.0	0.05	24.83	0.00	2.216	8.78	0.31	1.5	98.5	0.0	1.82	0.88	0.80	1.79	3.4	0.004	0.61	0.0	0.03	25.68	0.00	2.152	11.55	0.08	2.4	97.6	0.0	2.33	1.29	0.90	0.84	1.55	19374	1466	16	359	1	0	0	logfile
✔	8H1J	34428	2023-07-04	2022-10-03	3.1	3.36	3.20	3.3	0.005	0.53	0.0	0.03	16.84	0.00	2.232	8.41	5.19	1.7	98.3	0.0	2.19	0.62	0.67	2.02	3.3	0.003	0.52	0.0	0.03	17.80	0.00	2.176	8.02	0.32	2.5	97.5	0.0	1.40	0.62	0.71	0.78	1.93	5773	362	5	134	1	0	0	logfile

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