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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oT2 | 20192 | 2024-03-22 | 2019-05-02 | 4.1 | 4.25 | 4.02 | 4.1 | 0.009 | 0.87 | 0.0 | 0.05 | 8.41 | 0.01 | 2.066 | 6.19 | 0.00 | 7.3 | 92.7 | 0.0 | -2.26 | 0.71 | 0.76 | — | 4.1 | 0.002 | 0.52 | 0.0 | 0.03 | 10.48 | 0.00 | 2.063 | 7.42 | 0.00 | 5.1 | 94.9 | 0.0 | 1.82 | 1.72 | 0.70 | 0.76 | — | 32311 | 2444 | 4 | 0 | 56 | 0 | 14975 | logfile |
✔ | 7MVV | 24057 | 2024-03-19 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.5 | 0.002 | 0.50 | 0.0 | 0.03 | 10.83 | 0.00 | 2.039 | 6.48 | 0.43 | 2.7 | 97.3 | 0.0 | 3.22 | 0.92 | 0.89 | 0.81 | 1.07 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 6VPS | 21316 | 2024-03-10 | 2020-02-04 | 2.6 | 2.62 | 2.52 | 2.7 | 0.011 | 1.14 | 10.0 | 0.13 | 20.44 | 0.01 | 2.501 | 19.04 | 0.00 | 6.9 | 93.1 | 0.0 | -3.61 | 0.49 | 0.90 | 6.11 | 2.7 | 0.004 | 0.52 | 0.0 | 0.03 | 20.02 | 0.00 | 2.389 | 3.30 | 1.96 | 6.9 | 93.1 | 0.0 | -3.77 | 1.19 | 0.46 | 0.87 | 6.47 | 2736 | 279 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TRF | 26088 | 2024-03-16 | 2022-01-28 | 3.7 | 4.03 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 21.47 | 0.00 | 2.206 | 7.56 | 0.10 | 4.6 | 95.3 | 0.1 | -0.55 | 0.83 | 0.81 | 1.72 | 3.6 | 0.002 | 0.54 | 0.0 | 0.03 | 21.33 | 0.00 | 2.170 | 7.48 | 1.68 | 3.2 | 96.8 | 0.0 | 1.32 | 0.64 | 0.83 | 0.82 | 1.65 | 13581 | 1106 | 5 | 224 | 0 | 0 | 0 | logfile |
✔ | 6VAK | 21141 | 2024-03-19 | 2019-12-17 | 3.48 | 3.85 | — | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.36 | 0.00 | 2.047 | 7.47 | 2.96 | 8.2 | 91.8 | 0.0 | -2.80 | 0.73 | 0.81 | 3.28 | 3.8 | 0.004 | 0.60 | 0.0 | 0.03 | 16.60 | 0.00 | 2.170 | 6.03 | 3.90 | 6.3 | 93.7 | 0.0 | 2.01 | 0.52 | 0.73 | 0.84 | 2.94 | 22781 | 2992 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RQX | 24639 | 2024-03-21 | 2021-08-08 | 3.36 | 3.59 | — | 3.5 | 0.012 | 1.06 | 0.0 | 0.06 | 19.02 | 0.01 | 2.227 | 8.03 | 0.00 | 3.4 | 96.6 | 0.0 | -0.29 | 0.67 | 0.75 | 2.39 | 3.5 | 0.002 | 0.46 | 0.0 | 0.03 | 16.04 | 0.00 | 2.042 | 7.71 | 1.34 | 3.9 | 96.1 | 0.0 | 0.92 | 0.48 | 0.67 | 0.80 | 2.25 | 30450 | 2016 | 8 | 0 | 26 | 0 | 14344 | logfile |
✔ | 7Sii | 25142 | 2024-03-18 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.75 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.53 | 0.0 | 0.03 | 15.14 | 0.00 | 2.112 | 7.34 | 1.75 | 3.1 | 96.9 | 0.0 | 2.66 | 0.49 | 0.66 | 0.83 | 1.87 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 7Q2Z | 13786 | 2024-03-11 | 2021-10-26 | 3.2 | 2.91 | 3.15 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 18.98 | 0.00 | 2.227 | 4.26 | 0.00 | 6.5 | 93.4 | 0.1 | -1.44 | 0.67 | 0.80 | 2.05 | 3.2 | 0.002 | 0.52 | 0.0 | 0.03 | 19.87 | 0.00 | 2.133 | 3.95 | 1.46 | 2.0 | 97.9 | 0.1 | 2.28 | 1.21 | 0.70 | 0.86 | 1.89 | 8258 | 902 | 4 | 46 | 0 | 0 | 0 | logfile |
✔ | 7JoA | 22409 | 2024-03-16 | 2020-08-06 | 3.3 | 3.05 | — | 3.2 | 0.009 | 0.78 | 0.0 | 0.04 | 25.95 | 0.01 | 2.206 | 6.32 | 0.00 | 6.5 | 93.5 | 0.0 | -0.33 | 0.79 | 0.82 | 1.49 | 3.2 | 0.003 | 0.57 | 0.0 | 0.03 | 26.00 | 0.00 | 2.273 | 6.79 | 1.24 | 1.7 | 98.3 | 0.0 | 1.94 | 4.78 | 0.81 | 0.86 | 1.41 | 14994 | 1125 | 11 | 290 | 1 | 0 | 0 | logfile |
✔ | 7oN1 | 12993 | 2024-03-15 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.14 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | 3.4 | 0.004 | 0.57 | 0.0 | 0.03 | 27.16 | 0.00 | 2.098 | 6.97 | 2.50 | 2.8 | 97.2 | 0.0 | 2.38 | 1.33 | 0.84 | 0.90 | 1.47 | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |
✔ | 8AKQ | 15489 | 2024-03-10 | 2022-07-31 | 4.1 | 4.54 | 4.23 | 4.3 | 0.004 | 0.61 | 0.0 | 0.03 | 15.04 | 0.00 | 2.262 | 5.43 | 0.00 | 0.0 | 100.0 | 0.0 | 1.78 | 0.86 | 0.80 | — | 4.3 | 0.005 | 0.72 | 0.0 | 0.03 | 14.67 | 0.00 | 1.883 | 35.62 | 0.00 | 0.5 | 99.5 | 0.0 | 4.28 | 0.80 | 0.88 | 0.83 | — | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 7UT4 | 26754 | 2024-03-24 | 2022-04-26 | 3.9 | 4.06 | — | 4.0 | 0.006 | 0.93 | 0.0 | 0.04 | 18.88 | 0.01 | 2.087 | 5.16 | 0.53 | 5.0 | 94.9 | 0.0 | -0.40 | 0.44 | 0.69 | 1.12 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 19.15 | 0.00 | 2.026 | 11.20 | 4.49 | 5.6 | 94.4 | 0.0 | 1.12 | 2.38 | 0.50 | 0.73 | 1.16 | 39740 | 2448 | 2 | 0 | 0 | 0 | 20092 | logfile |
✔ | 7BL6 | 12219 | 2024-03-19 | 2021-01-18 | 4.0 | 7.11 | — | 4.0 | 0.002 | 0.42 | 0.0 | 0.03 | 22.70 | 0.00 | 2.117 | 10.95 | 0.07 | 4.7 | 95.3 | 0.1 | -0.28 | 0.92 | 0.83 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.03 | 23.88 | 0.00 | 1.985 | 24.44 | 1.27 | 6.9 | 93.0 | 0.1 | -1.13 | 3.11 | 0.94 | 0.84 | — | 92769 | 3600 | 42 | 3016 | 5 | 27 | 0 | logfile |
✔ | 6T7D | 10394 | 2024-03-11 | 2019-10-21 | 4.4 | 4.45 | 4.29 | 4.1 | 0.005 | 0.86 | 0.0 | 0.05 | 32.58 | 0.01 | 2.107 | 2.55 | 0.00 | 2.0 | 98.0 | 0.0 | -2.34 | 0.86 | 0.77 | — | 4.1 | 0.004 | 0.68 | 0.0 | 0.03 | 32.05 | 0.00 | 2.158 | 13.41 | 0.00 | 5.0 | 95.0 | 0.0 | 2.76 | 0.73 | 0.87 | 0.83 | — | 8209 | 853 | 11 | 234 | 0 | 0 | 0 | logfile |
✔ | 5XXB | 6778 | 2024-03-14 | 2017-07-03 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.07 | 5.0 | 0.09 | 23.24 | 0.00 | 1.261 | 4.91 | 4.74 | 7.1 | 91.3 | 1.5 | -3.54 | 0.65 | 0.77 | 2.19 | 3.2 | 0.003 | 0.58 | 0.0 | 0.03 | 22.55 | 0.00 | 2.041 | 8.57 | 4.55 | 5.5 | 94.0 | 0.5 | -0.64 | 0.60 | 0.81 | 0.86 | 1.72 | 121433 | 6215 | 44 | 3352 | 0 | 0 | 0 | logfile |
✔ | 6L3U | 0826 | 2024-03-18 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.010 | 0.96 | 0.0 | 0.05 | 17.46 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.53 | 0.0 | 0.03 | 15.87 | 0.00 | 2.110 | 1.75 | 1.00 | 0.6 | 99.4 | 0.0 | 2.60 | 0.89 | 0.63 | 0.85 | 2.84 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 6MEC | 9106 | 2024-03-18 | 2018-09-06 | 3.6 | 3.69 | — | 3.6 | 0.010 | 1.21 | 0.0 | 0.06 | 25.56 | 0.01 | 1.659 | 15.45 | 0.00 | 13.7 | 86.3 | 0.0 | -4.93 | 0.86 | 0.80 | 2.53 | 3.6 | 0.004 | 0.66 | 0.0 | 0.03 | 25.23 | 0.00 | 1.821 | 17.76 | 3.10 | 10.0 | 90.0 | 0.0 | -1.99 | 0.93 | 0.86 | 0.80 | 2.20 | 21276 | 414 | 5 | 832 | 52 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2024-03-19 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 11.84 | 0.00 | 1.921 | 10.41 | 1.36 | 2.7 | 97.3 | 0.0 | 2.74 | 2.05 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 6ESF | 3947 | 2024-03-15 | 2017-10-20 | 3.7 | 3.94 | — | 3.9 | 0.008 | 0.97 | 0.0 | 0.05 | 28.71 | 0.01 | 2.249 | 4.96 | 0.94 | 4.4 | 95.6 | 0.0 | -4.25 | 0.79 | 0.75 | 1.48 | 3.9 | 0.004 | 0.65 | 0.0 | 0.03 | 28.84 | 0.01 | 2.162 | 13.86 | 3.92 | 3.9 | 96.1 | 0.0 | 1.58 | 0.68 | 0.80 | 0.78 | 1.14 | 12091 | 762 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 7P0Z | 13153 | 2024-03-15 | 2021-07-01 | 2.43 | 2.02 | 2.41 | 2.2 | 0.016 | 0.94 | 0.0 | 0.06 | 14.02 | 0.01 | 2.141 | 7.29 | 0.00 | 4.3 | 95.7 | 0.0 | 1.90 | 0.83 | 0.86 | 2.91 | 2.3 | 0.003 | 0.51 | 0.0 | 0.03 | 18.19 | 0.00 | 2.272 | 4.45 | 2.23 | 0.6 | 99.4 | 0.0 | 5.11 | 0.53 | 0.84 | 0.87 | 2.21 | 12873 | 1652 | 7 | 0 | 0 | 0 | 0 | logfile |