Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6F	3063	2023-08-11	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	7UPi	26667	2023-08-10	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.56	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.002	0.56	0.0	0.04	10.89	0.00	2.006	4.22	0.11	2.1	97.9	0.0	-0.22	2.21	0.90	0.89	3.98	7775	972	5	0	5	0	0	logfile
✔	6G9o	4367	2023-08-23	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.39	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.3	0.004	0.64	0.0	0.04	10.91	0.00	2.176	10.91	0.00	4.4	95.6	0.0	-0.30	1.31	0.75	0.84	—	35532	4308	6	0	0	0	0	logfile
✔	8B40	15835	2023-08-11	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.003	0.65	0.0	0.04	10.91	0.00	2.129	15.12	0.00	5.6	94.4	0.0	-0.80	1.02	0.76	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	6QD2	4517	2023-08-16	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	7WoG	32651	2023-08-09	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	7T8C	25744	2023-08-20	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile
✔	7MVV	24057	2023-08-18	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6UP7	20836	2023-08-09	2019-10-16	4.2	4.33	—	4.2	0.008	1.08	0.0	0.06	10.36	0.01	2.216	9.73	0.00	13.2	86.8	0.0	-5.14	0.79	0.80	—	4.2	0.003	0.67	0.0	0.04	11.00	0.00	2.199	10.15	0.00	9.4	90.6	0.0	-1.48	1.20	0.78	0.79	—	4166	676	5	0	10	0	0	logfile
✔	5VoT	8721	2023-08-14	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.69	0.0	0.04	11.01	0.00	2.137	14.03	0.00	6.3	93.7	0.0	0.08	0.85	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	6Y1A	10669	2023-08-09	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.75	0.0	0.04	11.01	0.00	2.047	15.36	0.00	9.8	90.2	0.0	-4.85	1.54	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	7LF1	23297	2023-08-23	2021-01-15	4.04	4.49	4.10	4.2	0.006	1.07	0.0	0.06	9.39	0.01	1.592	12.06	0.16	12.9	86.7	0.4	-4.16	0.83	0.66	—	4.2	0.003	0.79	0.0	0.05	11.02	0.01	1.369	21.17	0.00	11.4	88.5	0.1	-2.15	1.32	0.86	0.75	—	34518	4548	24	0	12	0	0	logfile
✔	7R9o	24330	2023-08-10	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.60	0.0	0.04	11.04	0.00	1.937	11.65	0.00	4.2	95.8	0.0	-0.51	3.45	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	6CS2	7582	2023-08-19	2018-03-19	4.4	4.80	4.54	4.3	0.007	0.97	0.0	0.06	9.05	0.01	1.972	7.62	0.24	7.0	92.9	0.1	-3.98	0.85	0.82	—	4.3	0.003	0.70	0.0	0.04	11.05	0.00	2.054	13.89	0.00	5.7	94.3	0.0	-1.59	1.23	0.85	0.83	—	27858	3404	34	0	91	0	0	logfile
✔	7PP6	13580	2023-08-13	2021-09-13	3.4	4.07	—	3.6	0.003	0.64	0.0	0.04	10.06	0.00	1.846	6.09	0.19	9.2	90.8	0.0	-2.04	0.77	0.76	1.96	3.6	0.002	0.56	0.0	0.04	11.05	0.00	1.945	7.38	0.24	9.1	90.9	0.0	-1.54	0.37	0.78	0.80	1.98	66562	4592	22	0	28	92	31702	logfile
✔	6QD0	4515	2023-08-16	2018-12-31	4.5	4.65	5.24	4.6	0.009	1.03	0.0	0.05	9.68	0.01	2.001	9.56	0.00	14.2	85.8	0.0	-4.94	0.56	0.71	—	4.6	0.004	0.70	0.0	0.04	11.08	0.01	1.881	15.41	0.00	9.8	90.2	0.0	-1.77	1.19	0.56	0.72	—	21746	1420	5	0	2	0	11100	logfile
✔	6E9Y	9020	2023-08-09	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.005	0.58	0.0	0.03	11.10	0.00	2.001	10.39	0.00	1.7	98.3	0.0	1.61	1.51	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	5YFP	6827	2023-08-22	2017-09-21	4.4	8.20	—	6.7	0.006	1.35	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.005	1.05	0.0	0.05	11.10	0.00	2.021	30.50	0.10	19.1	80.6	0.3	-2.79	3.94	0.90	0.74	—	33096	5982	8	0	0	0	0	logfile
✔	7NXD	12637	2023-08-12	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	9.25	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.005	0.89	0.0	0.05	11.12	0.01	1.813	36.75	0.00	7.8	92.2	0.0	-1.51	1.55	0.90	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	7Ro4	24587	2023-08-20	2021-07-30	4.3	4.51	—	4.2	0.006	0.78	0.0	0.05	13.23	0.01	2.237	17.04	4.00	5.4	94.6	0.0	0.68	0.68	0.85	—	4.2	0.004	0.79	0.0	0.05	11.12	0.01	2.104	13.80	0.01	6.1	93.9	0.0	1.92	0.60	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile

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