Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJQ	12407	2023-04-28	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.45	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.005	0.55	0.0	0.04	15.81	0.00	1.670	5.87	0.65	2.5	97.5	0.1	1.45	0.90	0.86	0.89	4.13	74669	4936	31	0	11	16	37357	logfile
✔	7NJS	12417	2023-04-28	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.675	4.83	1.64	2.6	97.4	0.0	1.82	0.24	0.86	0.90	4.19	74642	4932	31	0	11	16	37346	logfile
✔	6RW4	10021	2023-04-26	2019-06-03	2.97	2.14	2.98	2.8	0.008	0.67	0.0	0.08	13.18	0.01	1.650	2.42	0.06	3.0	97.0	0.1	-2.57	0.85	0.84	4.78	2.8	0.004	0.65	0.0	0.04	14.61	0.01	1.675	3.45	0.88	1.9	98.0	0.0	1.04	1.98	0.88	0.88	4.29	128080	5920	47	955	85	59	59211	logfile
✔	8HAF	34587	2023-04-21	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	14.58	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.003	0.79	0.0	0.07	15.75	0.00	1.678	8.89	0.60	2.8	97.2	0.0	0.55	0.53	0.77	0.80	2.95	9681	1167	6	0	17	0	0	logfile
✔	7oP1	13011	2023-04-21	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.003	0.55	0.0	0.04	14.97	0.00	1.681	5.18	0.10	3.8	96.2	0.0	0.47	0.30	0.70	0.86	1.63	8744	1098	1	0	3	0	0	logfile
✔	6PW6	20500	2023-04-23	2019-07-22	4.5	4.56	4.36	4.5	0.022	1.83	0.0	0.11	10.81	0.01	2.200	1.61	0.56	2.7	97.2	0.2	0.50	0.74	0.81	—	4.5	0.005	0.99	0.0	0.06	13.27	0.01	1.682	27.21	0.00	7.2	92.6	0.2	-1.88	1.03	0.72	0.79	—	15942	1842	45	0	108	0	0	logfile
✔	7N72	24217	2023-04-20	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.10	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.004	0.86	0.0	0.04	14.42	0.00	1.683	5.79	0.40	2.4	97.6	0.0	2.13	0.44	0.67	0.83	3.01	7705	1030	1	0	11	5	0	logfile
✔	8G09	29650	2023-04-25	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.71	0.0	0.23	5.31	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.009	1.01	0.0	0.07	6.67	0.01	1.686	8.59	0.00	13.5	86.5	0.0	-1.37	0.75	0.82	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	3J94	6204	2023-04-25	2014-12-05	4.2	2.69	—	3.1	0.009	1.97	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.78	0.0	0.04	13.87	0.00	1.688	15.00	0.00	4.8	94.7	0.5	0.39	2.62	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	6DBQ	7847	2023-04-25	2018-05-03	4.22	4.34	—	4.2	0.005	1.05	2.0	0.04	23.25	0.01	1.539	28.02	0.12	10.4	89.5	0.1	-4.19	0.81	0.82	—	4.2	0.004	0.74	0.0	0.04	21.84	0.00	1.691	20.03	0.00	6.5	93.4	0.1	-1.35	1.52	0.81	0.82	—	19956	1939	10	222	6	0	0	logfile
✔	6Z1R	11039	2023-04-23	2020-05-14	3.29	3.42	3.09	3.3	0.007	0.71	0.0	0.04	15.07	0.00	1.890	9.22	0.00	6.6	93.4	0.0	-1.25	0.69	0.83	2.88	3.3	0.005	0.57	0.0	0.04	16.00	0.00	1.691	7.88	0.09	5.2	94.8	0.0	0.03	1.54	0.70	0.86	2.49	65754	4278	32	0	11	17	33137	logfile
✔	7Z1H	14446	2023-04-23	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✔	7NJo	12397	2023-04-28	2021-02-17	2.92	2.77	—	2.7	0.004	0.53	0.0	0.04	14.87	0.00	2.080	8.25	0.00	2.9	97.1	0.0	1.46	0.85	0.85	3.17	2.6	0.004	0.56	0.0	0.04	16.40	0.00	1.698	9.09	0.78	2.8	97.2	0.0	1.56	0.37	0.86	0.88	3.10	74641	4934	31	0	11	16	37345	logfile
✔	7UiX	26556	2023-04-28	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.82	0.01	1.703	9.66	0.32	3.3	96.7	0.0	0.33	0.82	0.60	0.84	2.84	76307	4820	20	0	23	0	38286	logfile
✔	5NJT	3656	2023-04-27	2017-03-29	3.8	4.18	4.07	4.1	0.008	1.18	0.0	0.06	17.85	0.01	1.178	8.95	1.58	14.2	85.2	0.6	-5.34	0.76	0.78	1.08	4.1	0.003	0.72	0.0	0.04	18.11	0.00	1.711	20.44	1.06	11.2	88.7	0.1	-2.53	0.57	0.77	0.80	0.80	133097	5596	51	4579	0	0	0	logfile
✔	7NHQ	12337	2023-04-25	2021-02-11	2.68	3.36	—	3.3	0.012	2.31	4.0	0.41	19.45	0.02	1.790	4.55	1.77	5.1	94.6	0.3	-2.58	0.59	0.77	3.11	3.3	0.003	0.75	0.0	0.04	18.22	0.00	1.714	10.90	2.81	2.9	97.1	0.0	0.92	1.75	0.61	0.82	3.19	20946	2237	27	0	60	0	0	logfile
✔	7TDG	25828	2023-04-23	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	114.0	0.16	19.71	0.02	1.714	88.48	3.87	38.2	59.5	2.3	-7.40	1.18	0.86	0.86	1.36	117345	12936	8	0	3624	0	0	logfile
✔	5LL6	4071	2023-04-20	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.04	0.0	0.05	19.21	0.01	1.715	25.88	1.94	13.6	85.6	0.9	-3.02	0.89	0.70	0.81	0.98	55262	3429	20	1325	5	0	0	logfile
✔	7NJN	12392	2023-04-27	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.52	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.004	0.51	0.0	0.04	15.78	0.00	1.716	6.68	0.55	2.4	97.6	0.1	1.57	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	7KSR	23024	2023-04-22	2020-11-24	4.1	4.28	—	4.2	0.004	0.70	0.0	0.05	11.74	0.00	2.200	1.91	0.00	5.5	94.5	0.0	-4.46	0.65	0.70	—	4.2	0.003	0.64	0.0	0.04	13.15	0.00	1.717	9.78	0.00	3.8	96.2	0.0	-1.06	1.08	0.69	0.77	—	11863	1524	5	0	7	0	0	logfile

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