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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HDD | 0204 | 2023-11-19 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.005 | 1.07 | 0.0 | 0.05 | 13.67 | 0.01 | 1.438 | 29.15 | 0.00 | 16.5 | 83.1 | 0.4 | -3.27 | 5.54 | 0.87 | 0.54 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L06 | 23095 | 2023-11-18 | 2020-12-11 | 3.3 | 3.96 | — | 3.6 | 0.014 | 1.65 | 2.0 | 0.15 | 12.73 | 0.02 | 1.189 | 3.42 | 0.87 | 3.8 | 96.2 | 0.0 | -0.59 | 0.81 | 0.73 | 1.86 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 14.28 | 0.00 | 1.439 | 7.83 | 0.12 | 4.6 | 95.4 | 0.0 | -0.20 | 0.91 | 0.84 | 0.80 | 1.99 | 71940 | 4636 | 28 | 0 | 77 | 0 | 35068 | logfile |
✔ | 8EBS | 27996 | 2023-11-20 | 2022-08-31 | 4.0 | 4.41 | 3.96 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 14.26 | 0.00 | 2.084 | 10.96 | 3.89 | 2.8 | 97.1 | 0.0 | 2.09 | 0.89 | 0.78 | — | 3.0 | 0.004 | 0.70 | 0.0 | 0.04 | 16.62 | 0.00 | 1.441 | 21.78 | 0.47 | 4.1 | 95.9 | 0.0 | 0.83 | 1.41 | 0.89 | 0.79 | — | 31035 | 3587 | 16 | 104 | 9 | 0 | 0 | logfile |
✔ | 6XLJ | 22245 | 2023-11-21 | 2020-06-28 | 2.7 | 3.34 | — | 3.2 | 0.014 | 1.03 | 1.0 | 0.07 | 17.16 | 0.01 | 1.853 | 8.54 | 0.16 | 1.7 | 98.3 | 0.0 | -3.00 | 0.75 | 0.81 | 2.68 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 18.46 | 0.00 | 1.441 | 9.86 | 2.11 | 2.8 | 97.2 | 0.0 | -0.06 | 0.51 | 0.70 | 0.76 | 2.10 | 35902 | 4221 | 17 | 111 | 13 | 0 | 0 | logfile |
✔ | 7o6Y | 12741 | 2023-11-15 | 2021-04-12 | 3.4 | 3.51 | 3.37 | 3.4 | 0.009 | 1.09 | 11.0 | 0.10 | 15.47 | 0.01 | 1.892 | 15.31 | 0.65 | 3.5 | 96.4 | 0.1 | -0.16 | 0.68 | 0.83 | 2.82 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.47 | 0.00 | 1.441 | 10.50 | 0.47 | 3.6 | 96.4 | 0.0 | 0.44 | 1.03 | 0.71 | 0.85 | 2.46 | 64866 | 7927 | 67 | 0 | 49 | 0 | 0 | logfile |
✔ | 7Q4D | 13803 | 2023-11-17 | 2021-10-30 | 3.78 | 4.08 | 3.81 | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 13.70 | 0.01 | 1.859 | 4.92 | 0.00 | 2.5 | 97.5 | 0.0 | -1.89 | 0.83 | 0.80 | 3.21 | 3.9 | 0.002 | 0.58 | 0.0 | 0.03 | 15.64 | 0.00 | 1.443 | 8.30 | 0.19 | 2.6 | 97.4 | 0.0 | 1.38 | 1.31 | 0.82 | 0.79 | 1.68 | 20098 | 1216 | 18 | 0 | 58 | 0 | 9462 | logfile |
✔ | 7Q3Y | 13797 | 2023-11-17 | 2021-10-29 | 4.34 | 4.62 | 4.39 | 4.4 | 0.007 | 0.90 | 0.0 | 0.05 | 13.63 | 0.01 | 1.969 | 5.69 | 0.19 | 3.2 | 96.8 | 0.0 | -1.33 | 0.84 | 0.78 | — | 4.4 | 0.004 | 0.61 | 0.0 | 0.04 | 13.84 | 0.00 | 1.445 | 10.99 | 0.10 | 4.1 | 95.9 | 0.0 | 1.21 | 1.39 | 0.84 | 0.78 | — | 19627 | 1201 | 11 | 0 | 37 | 1 | 9386 | logfile |
✔ | 8GYX | 34379 | 2023-11-13 | 2022-09-24 | 3.7 | 3.91 | 3.72 | 3.9 | 0.007 | 1.36 | 0.0 | 0.07 | 15.99 | 0.01 | 2.208 | 6.07 | 0.30 | 0.8 | 99.2 | 0.0 | 1.06 | 0.50 | 0.76 | 2.38 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 15.90 | 0.00 | 1.447 | 11.17 | 0.60 | 2.1 | 97.9 | 0.0 | 2.78 | 1.28 | 0.53 | 0.79 | 2.23 | 6118 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7CWT | 30487 | 2023-11-17 | 2020-08-31 | 3.7 | 3.88 | — | 3.7 | 0.009 | 1.18 | 16.0 | 0.11 | 11.08 | 0.01 | 1.257 | 28.32 | 1.43 | 6.9 | 92.5 | 0.6 | -2.94 | 0.58 | 0.48 | 1.06 | 3.7 | 0.005 | 0.73 | 0.0 | 0.04 | 14.05 | 0.00 | 1.450 | 14.14 | 0.28 | 10.5 | 89.2 | 0.3 | -2.51 | 1.90 | 0.65 | 0.64 | 1.40 | 70024 | 4584 | 18 | 0 | 14 | 0 | 34386 | logfile |
✔ | 8D96 | 27256 | 2023-11-14 | 2022-06-09 | 3.35 | 4.21 | 3.32 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 17.10 | 0.00 | 1.836 | 7.87 | 0.11 | 2.5 | 97.3 | 0.2 | 2.00 | 0.89 | 0.85 | 1.96 | 3.9 | 0.002 | 0.47 | 0.0 | 0.04 | 17.22 | 0.00 | 1.455 | 5.78 | 0.32 | 2.6 | 97.2 | 0.2 | 2.16 | 0.41 | 0.90 | 0.88 | 1.84 | 9203 | 1056 | 6 | 30 | 4 | 0 | 0 | logfile |
✔ | 7To1 | 26026 | 2023-11-13 | 2022-01-22 | 3.66 | 3.88 | — | 3.9 | 0.012 | 1.05 | 0.0 | 0.06 | 13.19 | 0.00 | 2.314 | 6.92 | 0.00 | 8.3 | 91.7 | 0.0 | -2.28 | 0.73 | 0.81 | 1.82 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.32 | 0.00 | 1.464 | 9.92 | 0.00 | 6.7 | 93.3 | 0.0 | -0.05 | 1.20 | 0.71 | 0.78 | 2.56 | 5601 | 635 | 3 | 21 | 2 | 0 | 0 | logfile |
✔ | 6BTM | 7286 | 2023-11-17 | 2017-12-07 | 3.4 | 3.76 | — | 3.8 | 0.022 | 1.40 | 0.0 | 0.36 | 11.42 | 0.01 | 1.991 | 1.71 | 0.15 | 7.3 | 92.7 | 0.0 | -2.53 | 0.64 | 0.77 | 2.80 | 3.8 | 0.003 | 0.90 | 0.0 | 0.05 | 14.93 | 0.00 | 1.467 | 7.04 | 0.41 | 5.5 | 94.5 | 0.0 | 0.17 | 0.75 | 0.72 | 0.86 | 1.99 | 18934 | 2361 | 9 | 0 | 10 | 0 | 0 | logfile |
✔ | 6ZKD | 11245 | 2023-11-16 | 2020-06-30 | 2.7 | 2.83 | — | 2.7 | 0.008 | 1.02 | 0.0 | 1.03 | 11.89 | 0.01 | 2.196 | 5.23 | 0.06 | 3.4 | 96.6 | 0.0 | -2.68 | 0.77 | 0.87 | 4.54 | 2.7 | 0.009 | 1.59 | 0.0 | 0.31 | 15.81 | 0.00 | 1.476 | 10.68 | 1.60 | 3.1 | 96.9 | 0.0 | 0.70 | 1.61 | 0.78 | 0.89 | 3.76 | 67450 | 8160 | 71 | 0 | 46 | 0 | 0 | logfile |
✔ | 7QSL | 14133 | 2023-11-17 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 14.23 | 0.00 | 1.561 | 3.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.7 | 0.007 | 1.30 | 0.0 | 0.25 | 15.89 | 0.00 | 1.483 | 5.63 | 0.77 | 2.1 | 97.9 | 0.0 | 1.47 | 0.87 | 0.78 | 0.90 | 4.18 | 69734 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✔ | 7EZ2 | 31386 | 2023-11-14 | 2021-06-01 | 3.05 | 2.80 | — | 3.0 | 0.005 | 0.56 | 0.0 | 0.03 | 13.94 | 0.00 | 1.809 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.69 | 0.81 | — | 3.0 | 0.007 | 0.85 | 0.0 | 0.05 | 15.80 | 0.01 | 1.484 | 7.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.04 | 0.73 | 0.89 | — | 8698 | 0 | 3 | 406 | 31 | 0 | 0 | logfile |
✔ | 6QCS | 4511 | 2023-11-17 | 2018-12-30 | 3.1 | 3.55 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 14.57 | 0.01 | 2.141 | 4.46 | 5.64 | 4.3 | 95.7 | 0.0 | -3.72 | 0.90 | 0.84 | 3.42 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 15.03 | 0.00 | 1.487 | 7.93 | 0.10 | 3.1 | 96.9 | 0.0 | 0.42 | 1.98 | 0.92 | 0.89 | 2.74 | 18278 | 2207 | 8 | 33 | 3 | 0 | 0 | logfile |
✔ | 6S8F | 10120 | 2023-11-21 | 2019-07-09 | 4.0 | 4.88 | — | 3.9 | 0.007 | 1.26 | 0.0 | 0.06 | 11.68 | 0.01 | 1.859 | 6.71 | 0.80 | 9.6 | 90.3 | 0.1 | -4.38 | 0.88 | 0.77 | — | 3.9 | 0.042 | 2.95 | 51.0 | 0.11 | 17.89 | 0.02 | 1.488 | 187.53 | 3.85 | 53.1 | 44.5 | 2.4 | -7.96 | 2.39 | 0.90 | 0.88 | — | 33664 | 3530 | 4 | 0 | 1616 | 0 | 0 | logfile |
✔ | 8oLT | 16962 | 2023-11-17 | 2023-03-30 | 2.84 | 2.41 | 2.82 | 2.8 | 0.010 | 0.93 | 0.0 | 1.02 | 14.90 | 0.01 | 1.872 | 5.36 | 0.38 | 4.7 | 95.2 | 0.1 | -1.43 | 0.60 | 0.83 | 4.32 | 2.8 | 0.008 | 1.58 | 0.0 | 0.31 | 16.94 | 0.00 | 1.500 | 6.76 | 1.67 | 2.4 | 97.6 | 0.0 | 1.08 | 1.16 | 0.61 | 0.85 | 3.63 | 68076 | 8213 | 106 | 0 | 56 | 280 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-11-19 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 1.504 | 15.88 | 0.44 | 11.4 | 88.3 | 0.3 | -1.95 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6S0X | 10076 | 2023-11-21 | 2019-06-18 | 2.425 | 2.50 | — | 2.5 | 0.021 | 2.13 | 0.0 | 0.11 | 21.64 | 0.01 | 0.917 | 12.73 | 19.66 | 9.7 | 90.2 | 0.1 | -4.36 | 0.60 | 0.63 | 2.41 | 2.5 | 0.006 | 0.96 | 0.0 | 0.05 | 20.41 | 0.01 | 1.508 | 18.73 | 6.35 | 8.0 | 91.9 | 0.0 | -1.97 | 0.67 | 0.64 | 0.65 | 2.42 | 140672 | 5589 | 53 | 4559 | 1 | 0 | 0 | logfile |