Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HDD	0204	2023-11-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7L06	23095	2023-11-18	2020-12-11	3.3	3.96	—	3.6	0.014	1.65	2.0	0.15	12.73	0.02	1.189	3.42	0.87	3.8	96.2	0.0	-0.59	0.81	0.73	1.86	3.6	0.003	0.61	0.0	0.04	14.28	0.00	1.439	7.83	0.12	4.6	95.4	0.0	-0.20	0.91	0.84	0.80	1.99	71940	4636	28	0	77	0	35068	logfile
✔	8EBS	27996	2023-11-20	2022-08-31	4.0	4.41	3.96	3.1	0.004	0.57	0.0	0.04	14.26	0.00	2.084	10.96	3.89	2.8	97.1	0.0	2.09	0.89	0.78	—	3.0	0.004	0.70	0.0	0.04	16.62	0.00	1.441	21.78	0.47	4.1	95.9	0.0	0.83	1.41	0.89	0.79	—	31035	3587	16	104	9	0	0	logfile
✔	6XLJ	22245	2023-11-21	2020-06-28	2.7	3.34	—	3.2	0.014	1.03	1.0	0.07	17.16	0.01	1.853	8.54	0.16	1.7	98.3	0.0	-3.00	0.75	0.81	2.68	3.2	0.003	0.59	0.0	0.04	18.46	0.00	1.441	9.86	2.11	2.8	97.2	0.0	-0.06	0.51	0.70	0.76	2.10	35902	4221	17	111	13	0	0	logfile
✔	7o6Y	12741	2023-11-15	2021-04-12	3.4	3.51	3.37	3.4	0.009	1.09	11.0	0.10	15.47	0.01	1.892	15.31	0.65	3.5	96.4	0.1	-0.16	0.68	0.83	2.82	3.4	0.004	0.65	0.0	0.04	16.47	0.00	1.441	10.50	0.47	3.6	96.4	0.0	0.44	1.03	0.71	0.85	2.46	64866	7927	67	0	49	0	0	logfile
✔	7Q4D	13803	2023-11-17	2021-10-30	3.78	4.08	3.81	3.9	0.008	1.01	0.0	0.06	13.70	0.01	1.859	4.92	0.00	2.5	97.5	0.0	-1.89	0.83	0.80	3.21	3.9	0.002	0.58	0.0	0.03	15.64	0.00	1.443	8.30	0.19	2.6	97.4	0.0	1.38	1.31	0.82	0.79	1.68	20098	1216	18	0	58	0	9462	logfile
✔	7Q3Y	13797	2023-11-17	2021-10-29	4.34	4.62	4.39	4.4	0.007	0.90	0.0	0.05	13.63	0.01	1.969	5.69	0.19	3.2	96.8	0.0	-1.33	0.84	0.78	—	4.4	0.004	0.61	0.0	0.04	13.84	0.00	1.445	10.99	0.10	4.1	95.9	0.0	1.21	1.39	0.84	0.78	—	19627	1201	11	0	37	1	9386	logfile
✔	8GYX	34379	2023-11-13	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	7CWT	30487	2023-11-17	2020-08-31	3.7	3.88	—	3.7	0.009	1.18	16.0	0.11	11.08	0.01	1.257	28.32	1.43	6.9	92.5	0.6	-2.94	0.58	0.48	1.06	3.7	0.005	0.73	0.0	0.04	14.05	0.00	1.450	14.14	0.28	10.5	89.2	0.3	-2.51	1.90	0.65	0.64	1.40	70024	4584	18	0	14	0	34386	logfile
✔	8D96	27256	2023-11-14	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.10	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.9	0.002	0.47	0.0	0.04	17.22	0.00	1.455	5.78	0.32	2.6	97.2	0.2	2.16	0.41	0.90	0.88	1.84	9203	1056	6	30	4	0	0	logfile
✔	7To1	26026	2023-11-13	2022-01-22	3.66	3.88	—	3.9	0.012	1.05	0.0	0.06	13.19	0.00	2.314	6.92	0.00	8.3	91.7	0.0	-2.28	0.73	0.81	1.82	3.9	0.003	0.66	0.0	0.04	15.32	0.00	1.464	9.92	0.00	6.7	93.3	0.0	-0.05	1.20	0.71	0.78	2.56	5601	635	3	21	2	0	0	logfile
✔	6BTM	7286	2023-11-17	2017-12-07	3.4	3.76	—	3.8	0.022	1.40	0.0	0.36	11.42	0.01	1.991	1.71	0.15	7.3	92.7	0.0	-2.53	0.64	0.77	2.80	3.8	0.003	0.90	0.0	0.05	14.93	0.00	1.467	7.04	0.41	5.5	94.5	0.0	0.17	0.75	0.72	0.86	1.99	18934	2361	9	0	10	0	0	logfile
✔	6ZKD	11245	2023-11-16	2020-06-30	2.7	2.83	—	2.7	0.008	1.02	0.0	1.03	11.89	0.01	2.196	5.23	0.06	3.4	96.6	0.0	-2.68	0.77	0.87	4.54	2.7	0.009	1.59	0.0	0.31	15.81	0.00	1.476	10.68	1.60	3.1	96.9	0.0	0.70	1.61	0.78	0.89	3.76	67450	8160	71	0	46	0	0	logfile
✔	7QSL	14133	2023-11-17	2022-01-13	2.76	2.80	2.81	2.7	0.010	0.96	0.0	0.84	14.23	0.00	1.561	3.91	0.06	3.1	96.8	0.0	-0.57	0.78	0.89	5.14	2.7	0.007	1.30	0.0	0.25	15.89	0.00	1.483	5.63	0.77	2.1	97.9	0.0	1.47	0.87	0.78	0.90	4.18	69734	8287	109	0	56	1024	0	logfile
✔	7EZ2	31386	2023-11-14	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.94	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.85	0.0	0.05	15.80	0.01	1.484	7.35	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	6QCS	4511	2023-11-17	2018-12-30	3.1	3.55	—	3.2	0.008	0.85	0.0	0.05	14.57	0.01	2.141	4.46	5.64	4.3	95.7	0.0	-3.72	0.90	0.84	3.42	3.2	0.002	0.56	0.0	0.04	15.03	0.00	1.487	7.93	0.10	3.1	96.9	0.0	0.42	1.98	0.92	0.89	2.74	18278	2207	8	33	3	0	0	logfile
✔	6S8F	10120	2023-11-21	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.95	51.0	0.11	17.89	0.02	1.488	187.53	3.85	53.1	44.5	2.4	-7.96	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	8oLT	16962	2023-11-17	2023-03-30	2.84	2.41	2.82	2.8	0.010	0.93	0.0	1.02	14.90	0.01	1.872	5.36	0.38	4.7	95.2	0.1	-1.43	0.60	0.83	4.32	2.8	0.008	1.58	0.0	0.31	16.94	0.00	1.500	6.76	1.67	2.4	97.6	0.0	1.08	1.16	0.61	0.85	3.63	68076	8213	106	0	56	280	0	logfile
✔	5M32	4146	2023-11-19	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.83	0.0	0.05	14.71	0.00	1.504	15.88	0.44	11.4	88.3	0.3	-1.95	1.49	0.83	0.81	1.30	76085	10500	52	0	8	0	0	logfile
✔	6S0X	10076	2023-11-21	2019-06-18	2.425	2.50	—	2.5	0.021	2.13	0.0	0.11	21.64	0.01	0.917	12.73	19.66	9.7	90.2	0.1	-4.36	0.60	0.63	2.41	2.5	0.006	0.96	0.0	0.05	20.41	0.01	1.508	18.73	6.35	8.0	91.9	0.0	-1.97	0.67	0.64	0.65	2.42	140672	5589	53	4559	1	0	0	logfile

• ← previous
• Page 7 of 528
• next →