Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJA	4901	2023-07-10	2019-04-26	3.0	3.11	—	3.1	0.005	0.86	0.0	0.05	14.79	0.01	2.314	2.75	0.23	5.8	94.2	0.0	-3.51	0.64	0.81	2.74	3.1	0.003	0.56	0.0	0.04	16.01	0.00	2.185	7.78	2.71	4.1	95.9	0.0	-0.05	1.02	0.67	0.86	2.30	20372	1996	8	194	0	0	0	logfile
✔	7UDS	26458	2023-07-08	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	13.46	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.71	0.0	0.05	15.60	0.00	2.095	11.66	0.54	4.8	95.2	0.0	-0.41	1.13	0.75	0.73	2.24	17032	2094	32	0	53	0	0	logfile
✔	7oPC	13015	2023-07-07	2021-05-31	3.0	2.99	—	2.9	0.017	1.03	1.0	0.08	14.38	0.01	1.898	5.28	0.05	5.8	94.1	0.1	-2.03	0.70	0.77	3.60	2.9	0.004	0.68	0.0	0.05	16.98	0.00	1.936	10.74	1.97	4.0	96.0	0.0	0.24	0.62	0.72	0.82	3.19	64223	9104	34	103	49	0	0	logfile
✔	7WSG	32757	2023-07-06	2022-01-29	3.03	3.29	—	3.2	0.003	0.52	0.0	0.04	12.82	0.00	2.058	10.65	4.60	2.7	97.3	0.0	-1.05	0.70	0.70	2.71	3.2	0.002	0.59	0.0	0.04	15.41	0.00	2.079	12.73	0.29	3.4	96.6	0.0	-0.22	0.94	0.71	0.73	2.03	6413	787	3	0	1	0	0	logfile
✔	6DNF	7971	2023-07-07	2018-06-06	3.2	4.05	—	4.0	0.009	1.06	0.0	0.04	9.26	0.01	2.295	2.79	0.00	4.6	95.4	0.0	-1.20	0.59	0.77	2.69	4.0	0.004	0.59	0.0	0.04	14.88	0.00	2.039	8.51	0.56	4.8	95.2	0.0	2.58	1.57	0.55	0.73	2.77	14119	900	8	0	11	0	6868	logfile
✔	7WR8	32718	2023-07-03	2022-01-26	3.5	3.74	—	3.8	0.008	1.16	0.0	0.06	13.75	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.68	0.0	0.05	15.46	0.00	2.127	12.59	0.28	10.0	90.0	0.0	-2.63	0.36	0.49	0.77	2.73	3286	417	4	0	3	0	0	logfile
✔	7NiW	12367	2023-07-06	2021-02-14	3.8	3.54	—	3.7	0.015	1.29	0.0	0.07	16.72	0.01	2.078	27.93	2.44	15.5	84.3	0.2	-5.23	0.66	0.80	1.64	3.8	0.004	0.68	0.0	0.04	17.19	0.00	2.077	11.62	0.92	4.7	95.3	0.0	-0.75	1.31	0.63	0.75	1.09	12477	1585	4	0	8	0	0	logfile
✔	6V6S	21073	2023-07-03	2019-12-05	4.3	3.91	—	3.8	0.006	0.75	1.0	0.05	13.81	0.00	2.102	10.50	0.63	5.0	94.9	0.1	-4.11	0.58	0.50	—	3.8	0.003	0.69	0.0	0.04	13.90	0.00	2.137	9.65	0.07	3.5	96.5	0.0	0.10	1.08	0.58	0.55	—	106422	13155	53	14	721	0	0	logfile
✔	7X0T	32924	2023-07-05	2022-02-22	3.3	3.58	—	3.6	0.010	1.31	3.0	0.09	15.37	0.01	2.217	7.12	1.87	9.9	89.8	0.2	-5.80	0.64	0.81	2.49	3.6	0.003	0.68	0.0	0.04	16.37	0.00	2.281	7.51	0.37	7.6	92.4	0.0	-3.99	0.95	0.62	0.83	1.90	10189	1266	4	0	2	0	0	logfile
✔	7QD4	13906	2023-07-09	2021-11-26	2.9	3.11	2.96	3.0	0.004	0.82	0.0	0.05	21.92	0.01	2.227	3.43	0.00	2.2	97.8	0.0	-0.77	0.74	0.74	2.94	3.0	0.004	0.57	0.0	0.04	23.16	0.00	2.177	9.13	1.16	2.8	97.2	0.0	2.00	0.88	0.79	0.83	2.16	19118	1816	6	216	0	0	0	logfile
✔	7SEF	25067	2023-07-08	2021-09-30	3.55	4.41	3.51	3.5	0.005	0.67	0.0	0.04	10.54	0.00	2.266	3.73	0.00	6.2	93.8	0.0	-2.07	0.90	0.85	1.80	3.6	0.003	0.69	0.0	0.04	11.83	0.00	2.273	11.43	0.11	4.7	95.3	0.0	-1.08	2.68	0.91	0.88	2.90	17154	2256	6	0	0	0	0	logfile
✔	6XH8	22185	2023-07-07	2020-06-18	4.1	4.25	—	3.9	0.012	1.12	0.0	0.06	14.73	0.01	2.006	9.71	0.27	13.7	86.2	0.1	-4.93	0.82	0.73	—	3.9	0.003	0.64	0.0	0.04	15.25	0.00	1.412	12.88	0.03	8.0	91.9	0.1	-2.13	1.27	0.81	0.75	—	65970	3951	14	110	5	0	32621	logfile
✔	7oPD	13016	2023-07-06	2021-05-31	3.0	3.01	2.90	2.9	0.019	1.06	2.0	0.08	14.37	0.01	1.819	5.31	0.04	5.9	94.1	0.1	-2.05	0.70	0.77	3.74	3.0	0.003	0.66	0.0	0.04	16.99	0.00	1.906	10.38	1.85	3.9	96.1	0.0	0.44	0.62	0.72	0.82	3.20	64227	9104	34	103	49	0	0	logfile
✔	5GAK	3227	2023-07-10	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	7UZ8	26882	2023-07-14	2022-05-08	3.1	3.30	3.17	3.3	0.004	0.62	0.0	0.05	13.18	0.00	2.085	10.88	0.06	3.4	96.6	0.0	-0.23	0.68	0.79	3.12	3.3	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.29	0.15	3.2	96.7	0.1	-0.06	0.40	0.69	0.84	2.61	30075	3801	15	0	33	0	0	logfile
✔	7VQ0	32078	2023-07-14	2021-10-18	3.03	3.26	3.14	3.2	0.004	0.59	0.0	0.05	13.95	0.00	2.124	9.20	0.03	4.6	95.3	0.1	-0.40	0.68	0.82	2.50	3.2	0.003	0.55	0.0	0.04	15.88	0.00	2.118	9.40	0.16	4.8	95.1	0.1	-0.37	0.37	0.69	0.85	2.43	29517	3624	35	0	91	0	0	logfile
✔	7PTR	13634	2023-07-15	2021-09-27	3.46	4.28	3.39	3.8	0.002	0.47	0.0	0.04	9.81	0.00	2.195	6.90	0.00	3.0	97.0	0.0	-0.08	0.75	0.80	1.24	3.9	0.002	0.52	0.0	0.04	12.69	0.00	2.112	8.76	0.20	3.2	96.8	0.0	-0.76	0.47	0.75	0.83	1.14	31704	4350	12	0	36	0	0	logfile
✔	7Z31	14470	2023-07-18	2022-03-01	2.76	2.15	—	2.1	0.006	0.70	0.0	0.05	15.67	0.01	1.998	13.10	6.49	7.1	92.9	0.1	-1.15	0.55	0.75	3.18	2.1	0.005	0.70	0.0	0.05	17.45	0.00	1.865	13.93	4.85	6.7	93.2	0.1	-0.96	0.44	0.55	0.78	2.79	40156	5040	25	0	29	1	0	logfile
✔	7Y8R	33684	2023-07-18	2022-06-24	4.4	5.29	5.72	4.4	0.003	0.54	0.0	0.04	18.39	0.00	1.920	4.56	0.05	5.0	94.9	0.1	-1.79	0.72	0.53	—	4.4	0.003	0.70	0.0	0.04	20.02	0.00	1.331	16.15	0.03	6.9	93.0	0.0	-0.48	1.66	0.83	0.80	—	43109	4407	28	330	174	0	0	logfile
✔	6X9o	22106	2023-07-10	2020-06-03	2.6	2.80	2.63	2.7	0.006	0.81	1.0	0.05	15.46	0.00	1.953	15.09	0.56	6.3	93.4	0.3	-2.11	0.79	0.86	2.75	2.7	0.003	0.64	0.0	0.04	17.13	0.00	2.167	9.67	1.46	4.2	95.6	0.2	1.73	1.04	0.78	0.88	2.53	20899	2669	2	0	0	0	0	logfile

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