Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BG4	12170	2023-07-05	2021-01-05	4.2	5.01	—	4.6	0.009	1.22	0.0	0.05	14.72	0.01	1.937	16.53	0.21	9.4	90.6	0.0	-2.15	0.72	0.76	—	4.6	0.003	0.80	0.0	0.04	14.11	0.00	2.006	15.43	0.00	8.0	92.0	0.0	-0.70	1.36	0.69	0.79	—	8927	1141	4	0	6	0	0	logfile
✔	8B8T	15921	2023-07-04	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.008	0.97	0.0	0.05	13.59	0.01	2.070	11.18	0.00	5.9	94.1	0.0	-0.32	0.52	0.74	0.78	—	7180	989	4	0	0	0	0	logfile
✔	7SWo	25477	2023-07-03	2021-11-20	4.1	3.78	—	3.8	0.007	0.89	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.003	0.72	0.0	0.05	13.81	0.01	2.118	18.05	0.00	6.0	94.0	0.0	-1.25	0.53	0.64	0.74	—	4784	627	3	0	0	0	0	logfile
✔	6J5A	0670	2023-07-04	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	12.84	0.00	2.192	10.27	0.00	8.6	91.4	0.0	-1.31	1.18	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6X5A	22047	2023-07-07	2020-05-25	4.36	4.99	—	4.3	0.007	0.89	0.0	0.05	27.01	0.01	2.107	17.78	1.66	6.2	93.7	0.2	-1.94	0.90	0.80	—	4.3	0.004	0.69	0.0	0.04	26.81	0.00	2.047	16.44	0.00	6.6	93.4	0.0	0.42	0.90	0.91	0.83	—	14963	1123	11	290	1	0	0	logfile
✔	7RUG	24705	2023-07-03	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.002	0.51	0.0	0.04	13.27	0.00	1.978	14.19	0.00	1.9	98.1	0.0	2.76	1.27	0.60	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	6XYE	10649	2023-07-05	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.004	0.76	0.0	0.05	12.39	0.00	2.150	16.05	0.00	8.4	91.6	0.0	-1.52	1.71	0.72	0.70	—	9834	1293	6	0	0	0	0	logfile
✔	7TT3	26109	2023-07-10	2022-01-31	4.3	4.47	—	4.4	0.006	0.99	0.0	0.05	10.46	0.01	2.059	4.09	0.00	1.1	98.9	0.0	1.09	0.73	0.75	—	4.4	0.003	0.62	0.0	0.04	12.84	0.00	1.941	8.04	0.00	4.3	95.7	0.0	-0.40	1.11	0.71	0.76	—	20524	1338	6	0	0	0	10060	logfile
✔	5ZQZ	6940	2023-07-08	2018-04-20	4.2	4.24	—	4.2	0.009	1.41	0.0	0.07	14.22	0.01	2.202	9.02	3.84	12.2	87.3	0.5	-4.96	0.78	0.80	—	4.2	0.004	0.85	0.0	0.05	13.16	0.00	2.095	16.23	0.00	10.3	89.7	0.0	-2.57	1.53	0.77	0.80	—	17174	2262	4	0	0	0	0	logfile
✔	6NB7	0404	2023-07-11	2018-12-06	4.5	4.89	—	4.6	0.016	1.50	1.0	0.10	9.02	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.79	0.0	0.05	10.43	0.00	2.139	7.53	0.00	5.1	94.9	0.0	-0.44	0.88	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	6AYG	7020	2023-07-05	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.59	0.0	0.04	10.50	0.00	2.121	3.95	0.00	2.8	97.2	0.0	2.30	0.90	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile
✔	6Y5K	10700	2023-07-05	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.76	0.0	0.05	12.98	0.00	2.096	10.42	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.003	0.70	0.0	0.05	12.88	0.00	2.113	15.93	0.00	3.1	96.9	0.0	0.21	1.01	0.87	0.79	—	10614	1335	9	0	6	0	0	logfile
✔	7ZF1	14694	2023-07-04	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.56	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.55	0.0	0.03	16.86	0.00	1.988	10.78	0.00	3.2	96.8	0.0	1.54	1.60	0.80	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	6LBA	0868	2023-07-07	2019-11-13	4.1	4.19	—	4.1	0.005	1.04	8.0	0.06	14.23	0.01	1.605	70.19	3.56	10.9	88.6	0.5	-2.46	0.76	0.78	—	4.1	0.003	0.77	0.0	0.04	14.69	0.00	1.998	15.98	0.00	7.5	92.5	0.0	0.52	1.66	0.77	0.78	—	14992	1864	4	0	0	0	0	logfile
✔	6KLE	0709	2023-07-06	2019-07-30	4.5	4.63	—	4.4	0.003	0.66	0.0	0.04	13.72	0.00	2.199	13.77	0.07	7.6	92.4	0.0	-0.87	0.83	0.76	—	4.4	0.002	0.70	0.0	0.04	13.89	0.00	2.146	12.24	0.00	7.1	92.9	0.0	-0.61	0.51	0.83	0.78	—	12769	1592	3	7	2	0	0	logfile
✔	7TT4	26110	2023-07-10	2022-01-31	4.2	4.40	—	4.3	0.005	0.77	0.0	0.05	10.61	0.00	2.051	2.23	0.00	1.2	98.8	0.0	0.72	0.72	0.76	—	4.3	0.003	0.60	0.0	0.04	13.09	0.00	1.984	7.22	0.00	3.1	96.9	0.0	0.14	2.40	0.71	0.76	—	20633	1346	6	0	0	0	10107	logfile
✔	7U1E	26299	2023-07-09	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	11.18	0.00	2.240	5.36	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.005	0.72	0.0	0.05	11.96	0.00	2.129	15.55	0.00	6.0	94.0	0.0	0.02	0.62	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	6KUP	9579	2023-07-06	2019-09-02	4.3	4.37	—	4.3	0.004	0.81	0.0	0.05	9.98	0.01	2.227	6.50	0.16	7.1	92.6	0.2	-4.90	0.71	0.74	—	4.3	0.003	0.75	0.0	0.04	13.40	0.00	2.177	13.95	0.00	6.7	93.2	0.1	-1.35	1.04	0.75	0.78	—	12254	1461	5	23	0	0	0	logfile
✔	6MJZ	9135	2023-07-06	2018-09-24	4.3	4.22	—	4.1	0.007	1.01	0.0	0.05	11.75	0.01	2.041	7.58	0.38	14.4	85.3	0.3	-5.04	0.69	0.56	—	4.1	0.004	0.86	0.0	0.05	13.30	0.00	2.048	18.13	0.00	12.5	87.4	0.1	-2.73	1.43	0.81	0.73	—	11436	1477	5	0	0	0	0	logfile
✔	7AT8	11910	2023-07-08	2020-10-29	4.4	4.59	—	4.4	0.004	0.65	0.0	0.04	24.67	0.00	1.763	8.59	0.40	2.3	97.4	0.3	-1.00	0.84	0.77	—	4.4	0.004	0.66	0.0	0.04	26.17	0.00	2.181	15.18	0.00	4.6	95.3	0.1	0.37	1.00	0.86	0.82	—	15951	1186	13	312	20	0	0	logfile

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