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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VT0 | 32117 | 2023-04-21 | 2021-10-27 | 3.4 | 3.53 | — | 3.5 | 0.011 | 1.31 | 16.0 | 0.06 | 14.91 | 0.01 | 2.126 | 14.86 | 3.65 | 14.3 | 82.6 | 3.1 | -4.14 | 0.68 | 0.76 | 3.22 | 3.5 | 0.004 | 0.78 | 0.0 | 0.05 | 15.86 | 0.00 | 2.132 | 10.74 | 0.00 | 14.4 | 84.8 | 0.8 | -3.20 | 1.20 | 0.69 | 0.78 | 2.83 | 10536 | 1326 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SWN | 25476 | 2023-04-20 | 2021-11-20 | 4.3 | 3.77 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 14.58 | 0.01 | 2.203 | 41.73 | 0.00 | 21.9 | 78.1 | 0.0 | -4.82 | 0.57 | 0.68 | — | 3.5 | 0.003 | 0.82 | 0.0 | 0.05 | 13.82 | 0.01 | 2.261 | 21.52 | 0.00 | 11.3 | 88.7 | 0.0 | -3.20 | 2.08 | 0.57 | 0.68 | — | 3283 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8G | 10121 | 2023-04-21 | 2019-07-10 | 3.5 | 3.70 | — | 3.7 | 0.010 | 1.32 | 0.0 | 0.06 | 17.19 | 0.01 | 2.294 | 5.75 | 3.86 | 14.7 | 85.2 | 0.1 | -6.67 | 0.67 | 0.82 | 1.81 | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 18.00 | 0.00 | 2.138 | 11.17 | 0.50 | 14.0 | 85.9 | 0.1 | -3.20 | 0.72 | 0.68 | 0.84 | 1.72 | 7530 | 957 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Uo0 | 26636 | 2023-04-21 | 2022-04-12 | 3.4 | 4.47 | — | 3.5 | 0.003 | 2.23 | 0.0 | 0.11 | 24.66 | 0.00 | 2.117 | 7.29 | 2.04 | 6.4 | 93.6 | 0.0 | -0.20 | 0.73 | 0.34 | 1.64 | 3.4 | 0.004 | 0.89 | 0.0 | 0.04 | 26.78 | 0.01 | 2.050 | 25.40 | 1.02 | 10.0 | 90.0 | 0.0 | -3.19 | 5.62 | 0.84 | 0.62 | 1.35 | 10697 | 112 | 4 | 455 | 7 | 0 | 0 | logfile |
✔ | 6TEH | 10490 | 2023-04-26 | 2019-11-12 | 3.99 | 4.07 | — | 4.0 | 0.009 | 1.24 | 0.0 | 0.07 | 12.44 | 0.01 | 2.239 | 14.88 | 1.08 | 14.8 | 85.0 | 0.2 | -5.02 | 0.66 | 0.81 | 1.89 | 4.0 | 0.004 | 0.87 | 0.0 | 0.05 | 16.22 | 0.01 | 2.172 | 19.12 | 0.99 | 13.4 | 86.6 | 0.0 | -3.17 | 3.13 | 0.67 | 0.82 | 1.35 | 22635 | 2997 | 15 | 0 | 3 | 0 | 0 | logfile |
✔ | 7CAG | 30330 | 2023-04-22 | 2020-06-08 | 3.78 | 4.10 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.11 | 14.20 | 0.01 | 1.845 | 13.53 | 0.15 | 12.6 | 87.4 | 0.0 | -5.72 | 0.67 | 0.80 | 1.70 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 15.91 | 0.00 | 1.941 | 11.95 | 0.23 | 10.4 | 89.6 | 0.0 | -3.16 | 0.49 | 0.68 | 0.80 | 1.08 | 12995 | 1717 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6oG2 | 20050 | 2023-04-21 | 2019-04-01 | 4.1 | 4.11 | — | 4.0 | 0.006 | 1.11 | 0.0 | 0.06 | 17.54 | 0.01 | 2.211 | 12.25 | 0.43 | 12.3 | 87.5 | 0.2 | -5.21 | 0.50 | 0.50 | — | 4.0 | 0.004 | 0.88 | 0.0 | 0.05 | 15.22 | 0.00 | 2.139 | 19.66 | 0.00 | 11.5 | 88.5 | 0.0 | -3.16 | 1.99 | 0.57 | 0.65 | — | 8847 | 1106 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 5MKE | 3523 | 2023-04-24 | 2016-12-04 | 4.3 | 4.44 | — | 4.3 | 0.010 | 1.25 | 8.0 | 0.07 | 13.69 | 0.01 | 1.806 | 56.89 | 0.82 | 18.5 | 81.1 | 0.5 | -5.74 | 0.63 | 0.63 | — | 4.4 | 0.004 | 0.87 | 0.0 | 0.05 | 14.65 | 0.00 | 2.069 | 25.59 | 0.00 | 10.1 | 89.9 | 0.0 | -3.16 | 0.91 | 0.64 | 0.68 | — | 16426 | 1908 | 11 | 0 | 34 | 0 | 0 | logfile |
✔ | 7X8Z | 33061 | 2023-04-20 | 2022-03-15 | 4.1 | 4.99 | 4.12 | 4.4 | 0.003 | 0.58 | 0.0 | 0.04 | 13.91 | 0.00 | 2.078 | 11.39 | 0.00 | 12.6 | 87.1 | 0.2 | -2.94 | 0.80 | 0.68 | — | 4.4 | 0.005 | 0.66 | 0.0 | 0.04 | 13.88 | 0.01 | 1.922 | 18.01 | 0.00 | 14.3 | 85.5 | 0.2 | -3.15 | 0.87 | 0.82 | 0.79 | — | 6480 | 426 | 4 | 0 | 1 | 0 | 3147 | logfile |
✔ | 6EDU | 9038 | 2023-04-27 | 2018-08-11 | 4.06 | 4.23 | — | 4.2 | 0.008 | 1.37 | 20.0 | 0.08 | 11.56 | 0.02 | 1.242 | 10.95 | 2.62 | 12.1 | 87.1 | 0.8 | -4.56 | 0.72 | 0.73 | — | 4.1 | 0.004 | 0.85 | 0.0 | 0.05 | 12.85 | 0.01 | 2.128 | 16.11 | 0.15 | 11.2 | 88.4 | 0.4 | -3.14 | 1.58 | 0.73 | 0.76 | — | 26271 | 3261 | 54 | 0 | 123 | 0 | 0 | logfile |
✔ | 8i54 | 35191 | 2023-04-25 | 2023-01-24 | 3.95 | 4.70 | 4.01 | 4.1 | 0.013 | 1.03 | 0.0 | 0.05 | 18.00 | 0.01 | 2.207 | 13.04 | 0.98 | 12.8 | 86.8 | 0.4 | -3.16 | 0.85 | 0.69 | 0.32 | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 18.83 | 0.00 | 1.913 | 26.57 | 0.49 | 14.7 | 85.1 | 0.2 | -3.14 | 0.57 | 0.86 | 0.72 | 0.61 | 19661 | 1113 | 4 | 67 | 0 | 0 | 9100 | logfile |
✔ | 6ACC | 9588 | 2023-04-27 | 2018-07-26 | 3.6 | 3.90 | — | 3.8 | 0.005 | 0.95 | 1.0 | 0.06 | 9.62 | 0.01 | 2.139 | 6.04 | 0.43 | 12.0 | 87.4 | 0.6 | -4.74 | 0.69 | 0.73 | 1.40 | 3.8 | 0.009 | 0.92 | 0.0 | 0.05 | 14.50 | 0.01 | 2.081 | 18.43 | 0.65 | 16.9 | 82.8 | 0.3 | -3.14 | 0.87 | 0.72 | 0.76 | 1.86 | 24906 | 3195 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2023-04-21 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.07 | 0.01 | 2.120 | 15.81 | 0.19 | 9.8 | 90.2 | 0.0 | -3.13 | 1.76 | 0.54 | 0.59 | 0.81 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6GTF | 0064 | 2023-04-21 | 2018-06-18 | 3.63 | 3.94 | — | 3.8 | 0.010 | 1.17 | 0.0 | 0.07 | 16.19 | 0.01 | 2.030 | 10.45 | 0.43 | 15.5 | 84.5 | 0.0 | -5.84 | 0.72 | 0.64 | 1.89 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 17.95 | 0.00 | 2.170 | 14.44 | 0.43 | 7.1 | 92.9 | 0.0 | -3.13 | 1.43 | 0.74 | 0.64 | 1.97 | 10871 | 1280 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7W88 | 32353 | 2023-04-20 | 2021-12-07 | 3.5 | 3.65 | — | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.87 | 0.00 | 2.225 | 15.29 | 8.23 | 15.2 | 84.8 | 0.0 | -5.15 | 0.70 | 0.69 | 1.82 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 17.22 | 0.00 | 2.213 | 16.13 | 0.64 | 15.3 | 84.7 | 0.0 | -3.13 | 0.94 | 0.70 | 0.69 | 1.73 | 7138 | 896 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CAH | 30331 | 2023-04-19 | 2020-06-08 | 3.9 | 4.13 | — | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 13.68 | 0.01 | 2.137 | 18.79 | 0.00 | 19.9 | 79.8 | 0.3 | -5.76 | 0.68 | 0.64 | 2.37 | 4.0 | 0.003 | 0.75 | 0.0 | 0.05 | 14.73 | 0.01 | 2.179 | 14.14 | 0.37 | 11.4 | 88.6 | 0.0 | -3.11 | 0.60 | 0.70 | 0.63 | 2.02 | 2889 | 404 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WQZ | 32716 | 2023-04-20 | 2022-01-26 | 3.7 | 4.25 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 10.18 | 0.00 | 2.272 | 9.90 | 2.13 | 8.5 | 91.5 | 0.0 | -4.46 | 0.81 | 0.74 | 1.55 | 4.0 | 0.003 | 0.81 | 0.0 | 0.05 | 13.97 | 0.00 | 2.161 | 18.77 | 0.95 | 12.0 | 87.8 | 0.2 | -3.10 | 0.73 | 0.83 | 0.78 | 1.75 | 3974 | 496 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 7XRP | 33416 | 2023-04-20 | 2022-05-11 | 3.88 | 4.07 | 3.83 | 4.0 | 0.008 | 1.14 | 0.0 | 0.08 | 14.63 | 0.02 | 2.261 | 4.57 | 0.45 | 8.4 | 91.6 | 0.0 | -4.63 | 0.53 | 0.80 | 2.30 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 16.41 | 0.00 | 2.196 | 13.96 | 0.68 | 5.8 | 94.2 | 0.0 | -3.10 | 0.68 | 0.53 | 0.80 | 1.97 | 4129 | 515 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7AKV | 11814 | 2023-04-20 | 2020-10-02 | 3.6 | 3.04 | 3.41 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 2.005 | 76.42 | 0.16 | 17.7 | 82.2 | 0.1 | -4.19 | 0.81 | 0.82 | 2.44 | 3.7 | 0.002 | 0.55 | 0.0 | 0.04 | 16.00 | 0.00 | 2.063 | 70.95 | 0.47 | 12.5 | 87.4 | 0.1 | -3.09 | 0.86 | 0.81 | 0.82 | 1.88 | 6201 | 799 | 2 | 0 | 0 | 0 | 245 | logfile |
✔ | 8CTG | 26989 | 2023-04-20 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.91 | 0.0 | 0.04 | 7.56 | 0.00 | 2.231 | 7.59 | 1.15 | 15.0 | 84.8 | 0.2 | -3.09 | 2.07 | 0.60 | 0.45 | 1.92 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |