Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QiG	13989	2023-11-13	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.73	0.00	2.134	6.24	0.87	10.0	90.0	0.0	-4.19	0.62	0.38	0.87	5.69	3213	396	3	0	0	0	0	logfile
✔	6L2T	0814	2023-11-15	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.005	0.77	0.0	0.05	12.54	0.01	2.083	8.68	0.00	17.6	82.3	0.1	-4.18	0.52	0.61	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	7TMC	25995	2023-11-13	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	7MLZ	23914	2023-11-13	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	12.96	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.79	0.0	0.05	14.96	0.00	2.129	15.09	0.19	15.6	84.3	0.2	-4.17	0.50	0.82	0.65	1.05	4864	624	4	0	5	0	0	logfile
✔	8SBD	40305	2023-11-14	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.203	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.68	0.0	0.05	15.43	0.00	1.888	27.68	0.56	11.5	88.5	0.0	-4.15	1.07	0.72	0.74	3.13	8864	584	32	0	0	0	4280	logfile
✔	7YNL	33965	2023-11-13	2022-07-31	2.6	2.16	2.41	3.2	0.009	2.40	0.0	0.06	16.15	0.05	2.128	26.40	0.00	8.9	91.1	0.0	-6.11	0.27	0.35	2.03	3.4	0.004	0.96	0.0	0.05	18.12	0.00	2.218	11.58	8.44	9.8	90.2	0.0	-4.15	3.90	0.39	0.64	2.49	4080	464	16	0	16	0	0	logfile
✔	7P6E	13227	2023-11-14	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.005	0.72	0.0	0.05	13.11	0.00	2.134	11.17	0.21	8.3	91.7	0.0	-4.15	2.70	0.51	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	7NCH	12266	2023-11-15	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.70	2.0	0.05	15.63	0.00	1.978	9.23	0.00	11.2	88.8	0.0	-4.13	1.66	0.64	0.52	2.25	11292	816	12	0	0	0	5796	logfile
✔	6RT0	4994	2023-11-13	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	6TNF	10531	2023-11-14	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	18.93	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.006	1.19	0.0	0.10	15.66	0.01	2.088	17.70	0.00	21.3	78.6	0.1	-4.12	0.55	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7M64	23688	2023-11-13	2021-03-25	4.0	4.02	—	4.3	0.073	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.004	0.96	0.0	0.04	11.67	0.00	2.231	11.30	0.48	5.7	94.3	0.0	-4.10	1.15	0.52	0.74	—	1850	250	10	0	10	0	0	logfile
✔	6RTB	4996	2023-11-13	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.76	0.0	0.05	15.59	0.00	2.167	12.95	1.53	17.5	82.5	0.0	-4.08	0.60	0.62	0.80	3.79	4681	699	10	0	0	0	0	logfile
✔	7KVE	23048	2023-11-15	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.05	16.52	0.01	2.162	12.03	0.08	12.6	87.4	0.0	-4.06	1.20	0.75	0.73	2.24	11142	1374	1	0	0	0	0	logfile
✔	6DJP	7939	2023-11-14	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	6L1T	0801	2023-11-14	2019-09-30	3.22	3.42	—	3.4	0.011	0.92	0.0	0.06	14.06	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.005	0.73	0.0	0.05	16.05	0.00	2.215	11.78	0.44	10.0	90.0	0.0	-4.06	1.41	0.49	0.86	3.50	7010	1000	10	0	0	0	0	logfile
✔	6M1D	30041	2023-11-18	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.67	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	4.6	0.005	1.04	0.0	0.05	14.90	0.01	0.441	31.95	0.00	11.3	88.3	0.4	-4.03	0.67	0.68	0.70	—	21776	2706	4	0	0	0	0	logfile
✔	5XLo	6729	2023-11-16	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.24	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✔	7X0T	32924	2023-11-15	2022-02-22	3.3	3.58	—	3.6	0.010	1.31	3.0	0.09	15.43	0.01	2.217	7.12	1.87	9.9	89.8	0.2	-5.80	0.64	0.81	2.49	3.6	0.003	0.67	0.0	0.04	16.41	0.00	2.153	7.27	0.37	7.4	92.6	0.0	-4.03	0.94	0.61	0.83	1.95	10189	1266	4	0	2	0	0	logfile
✔	8BG9	16027	2023-11-13	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	6EZo	4162	2023-11-17	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.97	0.0	0.05	10.23	0.01	1.979	9.01	0.00	23.2	76.5	0.3	-4.02	0.46	0.78	0.78	—	18758	3367	11	0	1	0	0	logfile

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