Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VT0	32117	2023-04-21	2021-10-27	3.4	3.53	—	3.5	0.011	1.31	16.0	0.06	14.91	0.01	2.126	14.86	3.65	14.3	82.6	3.1	-4.14	0.68	0.76	3.22	3.5	0.004	0.78	0.0	0.05	15.86	0.00	2.132	10.74	0.00	14.4	84.8	0.8	-3.20	1.20	0.69	0.78	2.83	10536	1326	2	0	0	0	0	logfile
✔	7SWN	25476	2023-04-20	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	6S8G	10121	2023-04-21	2019-07-10	3.5	3.70	—	3.7	0.010	1.32	0.0	0.06	17.19	0.01	2.294	5.75	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.006	0.86	0.0	0.05	18.00	0.00	2.138	11.17	0.50	14.0	85.9	0.1	-3.20	0.72	0.68	0.84	1.72	7530	957	7	0	3	0	0	logfile
✔	7Uo0	26636	2023-04-21	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	24.66	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.4	0.004	0.89	0.0	0.04	26.78	0.01	2.050	25.40	1.02	10.0	90.0	0.0	-3.19	5.62	0.84	0.62	1.35	10697	112	4	455	7	0	0	logfile
✔	6TEH	10490	2023-04-26	2019-11-12	3.99	4.07	—	4.0	0.009	1.24	0.0	0.07	12.44	0.01	2.239	14.88	1.08	14.8	85.0	0.2	-5.02	0.66	0.81	1.89	4.0	0.004	0.87	0.0	0.05	16.22	0.01	2.172	19.12	0.99	13.4	86.6	0.0	-3.17	3.13	0.67	0.82	1.35	22635	2997	15	0	3	0	0	logfile
✔	7CAG	30330	2023-04-22	2020-06-08	3.78	4.10	—	4.0	0.004	0.76	0.0	0.11	14.20	0.01	1.845	13.53	0.15	12.6	87.4	0.0	-5.72	0.67	0.80	1.70	4.0	0.003	0.74	0.0	0.04	15.91	0.00	1.941	11.95	0.23	10.4	89.6	0.0	-3.16	0.49	0.68	0.80	1.08	12995	1717	8	0	6	0	0	logfile
✔	6oG2	20050	2023-04-21	2019-04-01	4.1	4.11	—	4.0	0.006	1.11	0.0	0.06	17.54	0.01	2.211	12.25	0.43	12.3	87.5	0.2	-5.21	0.50	0.50	—	4.0	0.004	0.88	0.0	0.05	15.22	0.00	2.139	19.66	0.00	11.5	88.5	0.0	-3.16	1.99	0.57	0.65	—	8847	1106	4	0	3	0	0	logfile
✔	5MKE	3523	2023-04-24	2016-12-04	4.3	4.44	—	4.3	0.010	1.25	8.0	0.07	13.69	0.01	1.806	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	4.4	0.004	0.87	0.0	0.05	14.65	0.00	2.069	25.59	0.00	10.1	89.9	0.0	-3.16	0.91	0.64	0.68	—	16426	1908	11	0	34	0	0	logfile
✔	7X8Z	33061	2023-04-20	2022-03-15	4.1	4.99	4.12	4.4	0.003	0.58	0.0	0.04	13.91	0.00	2.078	11.39	0.00	12.6	87.1	0.2	-2.94	0.80	0.68	—	4.4	0.005	0.66	0.0	0.04	13.88	0.01	1.922	18.01	0.00	14.3	85.5	0.2	-3.15	0.87	0.82	0.79	—	6480	426	4	0	1	0	3147	logfile
✔	6EDU	9038	2023-04-27	2018-08-11	4.06	4.23	—	4.2	0.008	1.37	20.0	0.08	11.56	0.02	1.242	10.95	2.62	12.1	87.1	0.8	-4.56	0.72	0.73	—	4.1	0.004	0.85	0.0	0.05	12.85	0.01	2.128	16.11	0.15	11.2	88.4	0.4	-3.14	1.58	0.73	0.76	—	26271	3261	54	0	123	0	0	logfile
✔	8i54	35191	2023-04-25	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	18.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.62	0.0	0.04	18.83	0.00	1.913	26.57	0.49	14.7	85.1	0.2	-3.14	0.57	0.86	0.72	0.61	19661	1113	4	67	0	0	9100	logfile
✔	6ACC	9588	2023-04-27	2018-07-26	3.6	3.90	—	3.8	0.005	0.95	1.0	0.06	9.62	0.01	2.139	6.04	0.43	12.0	87.4	0.6	-4.74	0.69	0.73	1.40	3.8	0.009	0.92	0.0	0.05	14.50	0.01	2.081	18.43	0.65	16.9	82.8	0.3	-3.14	0.87	0.72	0.76	1.86	24906	3195	3	0	0	0	0	logfile
✔	6P49	20247	2023-04-21	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.80	0.0	0.04	17.07	0.01	2.120	15.81	0.19	9.8	90.2	0.0	-3.13	1.76	0.54	0.59	0.81	9576	1166	4	0	2	0	0	logfile
✔	6GTF	0064	2023-04-21	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	16.19	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.003	0.70	0.0	0.04	17.95	0.00	2.170	14.44	0.43	7.1	92.9	0.0	-3.13	1.43	0.74	0.64	1.97	10871	1280	4	66	0	0	0	logfile
✔	7W88	32353	2023-04-20	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.75	0.0	0.04	17.22	0.00	2.213	16.13	0.64	15.3	84.7	0.0	-3.13	0.94	0.70	0.69	1.73	7138	896	1	0	0	0	0	logfile
✔	7CAH	30331	2023-04-19	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.75	0.0	0.05	14.73	0.01	2.179	14.14	0.37	11.4	88.6	0.0	-3.11	0.60	0.70	0.63	2.02	2889	404	3	0	0	0	0	logfile
✔	7WQZ	32716	2023-04-20	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.18	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.0	0.003	0.81	0.0	0.05	13.97	0.00	2.161	18.77	0.95	12.0	87.8	0.2	-3.10	0.73	0.83	0.78	1.75	3974	496	4	0	9	0	0	logfile
✔	7XRP	33416	2023-04-20	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.63	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.004	0.72	0.0	0.04	16.41	0.00	2.196	13.96	0.68	5.8	94.2	0.0	-3.10	0.68	0.53	0.80	1.97	4129	515	5	0	4	0	0	logfile
✔	7AKV	11814	2023-04-20	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.55	0.0	0.04	16.00	0.00	2.063	70.95	0.47	12.5	87.4	0.1	-3.09	0.86	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	8CTG	26989	2023-04-20	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile

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