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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PLU | 13502 | 2024-03-19 | 2021-09-01 | 3.2 | 3.11 | 3.17 | 3.0 | 0.005 | 0.85 | 4.0 | 0.05 | 14.78 | 0.01 | 1.314 | 5.25 | 0.04 | 0.1 | 99.9 | 0.0 | -1.57 | 0.89 | 0.82 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23288 | 2906 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 7U2B | 26311 | 2024-03-11 | 2022-02-23 | 4.1 | 4.26 | — | 4.2 | 0.009 | 0.96 | 0.0 | 0.05 | 18.56 | 0.00 | 1.936 | 7.07 | 0.15 | 0.1 | 99.9 | 0.0 | 2.20 | 0.72 | 0.71 | — | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 18.04 | 0.00 | 2.111 | 8.50 | 0.00 | 2.3 | 97.7 | 0.0 | 0.86 | 1.41 | 0.78 | 0.79 | — | 7316 | 780 | 5 | 53 | 2 | 0 | 0 | logfile |
✔ | 7UiX | 26556 | 2024-03-17 | 2022-03-29 | 3.24 | 3.26 | — | 3.3 | 0.004 | 0.79 | 0.0 | 0.04 | 14.39 | 0.00 | 2.013 | 2.99 | 0.02 | 0.1 | 99.9 | 0.0 | -0.81 | 0.62 | 0.80 | 2.80 | 3.3 | 0.012 | 0.84 | 1.0 | 0.04 | 16.88 | 0.01 | 1.708 | 10.37 | 2.04 | 3.4 | 96.6 | 0.0 | 0.24 | 0.80 | 0.62 | 0.85 | 2.91 | 76307 | 4820 | 20 | 0 | 23 | 0 | 38286 | logfile |
✔ | 6PoS | 20418 | 2024-03-10 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.80 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.003 | 0.54 | 0.0 | 0.04 | 12.96 | 0.00 | 1.972 | 9.37 | 0.00 | 3.3 | 96.7 | 0.0 | 0.08 | 1.01 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 6ZLG | 11265 | 2024-03-22 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | 3.1 | 0.002 | 0.37 | 0.0 | 0.03 | 17.78 | 0.00 | 2.156 | 5.87 | 3.13 | 1.5 | 98.5 | 0.0 | 5.38 | 1.17 | 0.81 | 0.89 | 2.84 | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PLZ | 13507 | 2024-03-19 | 2021-09-01 | 3.2 | 3.30 | 3.19 | 3.2 | 0.016 | 1.53 | 0.0 | 0.06 | 16.38 | 0.01 | 2.054 | 5.68 | 0.00 | 0.1 | 99.9 | 0.0 | -1.13 | 0.88 | 0.84 | 2.66 | 3.2 | 0.004 | 1.03 | 1.0 | 0.04 | 17.38 | 0.00 | 2.032 | 8.56 | 1.45 | 1.5 | 98.5 | 0.0 | 1.21 | 0.78 | 0.89 | 0.88 | 2.34 | 23278 | 2887 | 10 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WR2 | 21875 | 2024-03-24 | 2020-04-29 | 2.88 | 3.14 | — | 3.1 | 0.014 | 0.88 | 0.0 | 0.06 | 12.47 | 0.01 | 2.203 | 4.10 | 0.00 | 0.1 | 99.9 | 0.0 | -0.06 | 0.51 | 0.72 | 2.95 | 3.1 | 0.004 | 0.56 | 0.0 | 0.04 | 17.08 | 0.00 | 1.927 | 6.42 | 1.78 | 2.4 | 97.6 | 0.0 | 1.07 | 1.57 | 0.69 | 0.88 | 4.06 | 42671 | 2729 | 34 | 0 | 0 | 14 | 21361 | logfile |
✔ | 6XLA | 22237 | 2024-03-10 | 2020-06-28 | 3.1 | 3.41 | — | 3.3 | 0.005 | 0.65 | 0.0 | 0.04 | 19.96 | 0.00 | 2.276 | 3.37 | 0.00 | 0.2 | 99.8 | 0.0 | -2.59 | 0.78 | 0.84 | 3.37 | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 20.70 | 0.00 | 2.109 | 5.11 | 2.04 | 3.0 | 97.0 | 0.0 | -0.43 | 1.31 | 0.79 | 0.86 | 2.97 | 5403 | 536 | 6 | 46 | 2 | 0 | 0 | logfile |
✔ | 6ZVJ | 11458 | 2024-03-12 | 2020-07-24 | 3.8 | 3.00 | — | 3.1 | 0.010 | 1.33 | 7.0 | 0.07 | 21.45 | 0.01 | 1.731 | 5.46 | 1.39 | 0.2 | 99.8 | 0.0 | -4.19 | 0.59 | 0.64 | 1.31 | 2.9 | 0.004 | 0.70 | 2.0 | 0.04 | 21.44 | 0.00 | 1.403 | 13.94 | 3.42 | 5.2 | 94.7 | 0.0 | -0.80 | 1.28 | 0.67 | 0.75 | 0.95 | 115020 | 10127 | 55 | 1720 | 9 | 0 | 0 | logfile |
✔ | 7PMF | 13531 | 2024-03-14 | 2021-09-02 | 3.4 | 4.29 | 3.46 | 3.3 | 0.010 | 1.00 | 1.0 | 0.06 | 15.34 | 0.01 | 1.313 | 3.78 | 0.09 | 0.2 | 99.8 | 0.0 | -1.44 | 0.91 | 0.83 | 3.07 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 15.11 | 0.00 | 1.944 | 7.01 | 0.65 | 1.6 | 98.4 | 0.0 | 1.78 | 1.29 | 0.94 | 0.88 | 2.36 | 10125 | 1256 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMi | 13535 | 2024-03-15 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.17 | 2.0 | 0.07 | 15.80 | 0.01 | 1.306 | 5.04 | 0.09 | 0.2 | 99.8 | 0.0 | -1.50 | 0.92 | 0.84 | 2.97 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.73 | 0.00 | 2.017 | 7.56 | 0.46 | 1.5 | 98.5 | 0.0 | 1.35 | 0.66 | 0.94 | 0.88 | 2.56 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7M5o | 23678 | 2024-03-15 | 2021-03-24 | 3.54 | 2.81 | 3.58 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 18.45 | 0.00 | 1.978 | 10.65 | 1.25 | 0.2 | 99.8 | 0.0 | -2.03 | 0.79 | 0.75 | 1.08 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 19.38 | 0.00 | 2.059 | 12.79 | 3.56 | 4.0 | 96.0 | 0.0 | 0.38 | 1.23 | 0.79 | 0.76 | 1.43 | 11648 | 655 | 3 | 37 | 1 | 0 | 5635 | logfile |
✔ | 6PP8 | 20422 | 2024-03-22 | 2019-07-05 | 4.12 | 4.53 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.44 | 0.01 | 2.116 | 2.93 | 0.00 | 0.2 | 99.8 | 0.0 | -2.36 | 0.80 | 0.76 | — | 4.3 | 0.004 | 0.59 | 0.0 | 0.04 | 12.72 | 0.00 | 1.922 | 9.69 | 0.00 | 4.2 | 95.8 | 0.0 | -0.63 | 0.95 | 0.82 | 0.80 | — | 32335 | 2078 | 13 | 0 | 13 | 0 | 16234 | logfile |
✔ | 7PML | 13538 | 2024-03-15 | 2021-09-02 | 3.3 | 4.18 | 3.26 | 3.2 | 0.005 | 0.86 | 1.0 | 0.05 | 15.93 | 0.01 | 1.315 | 3.95 | 0.09 | 0.2 | 99.8 | 0.0 | -1.35 | 0.91 | 0.83 | 2.88 | 3.3 | 0.002 | 0.62 | 0.0 | 0.04 | 15.91 | 0.00 | 2.004 | 5.93 | 0.28 | 1.1 | 98.9 | 0.0 | 1.97 | 0.70 | 0.94 | 0.88 | 2.33 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PM0 | 13508 | 2024-03-15 | 2021-09-01 | 3.6 | 3.89 | 3.65 | 3.6 | 0.014 | 1.42 | 0.0 | 0.06 | 16.30 | 0.01 | 2.002 | 4.90 | 0.00 | 0.2 | 99.8 | 0.0 | -1.27 | 0.90 | 0.85 | 2.96 | 3.6 | 0.003 | 0.90 | 0.0 | 0.04 | 16.75 | 0.00 | 2.010 | 9.10 | 1.11 | 0.9 | 99.1 | 0.0 | 1.50 | 0.70 | 0.89 | 0.85 | 2.00 | 10169 | 1261 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PMJ | 13536 | 2024-03-14 | 2021-09-02 | 3.4 | 4.31 | 3.37 | 3.3 | 0.010 | 1.11 | 1.0 | 0.06 | 15.90 | 0.01 | 1.310 | 6.69 | 0.09 | 0.2 | 99.8 | 0.0 | -1.97 | 0.90 | 0.82 | 3.01 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.70 | 0.00 | 1.942 | 7.89 | 0.84 | 1.4 | 98.6 | 0.0 | 1.76 | 0.72 | 0.93 | 0.86 | 2.49 | 10085 | 1251 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PMG | 13532 | 2024-03-15 | 2021-09-02 | 3.3 | 4.20 | 3.27 | 3.2 | 0.014 | 1.18 | 2.0 | 0.07 | 15.70 | 0.01 | 1.308 | 4.64 | 0.09 | 0.2 | 99.8 | 0.0 | -1.37 | 0.92 | 0.85 | 3.45 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.46 | 0.00 | 1.972 | 6.13 | 0.55 | 1.5 | 98.5 | 0.0 | 1.70 | 1.27 | 0.94 | 0.89 | 2.87 | 10189 | 1264 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8VE0 | 43160 | 2024-03-10 | 2023-12-18 | 3.1 | 2.92 | 2.99 | 3.1 | 0.006 | 0.62 | 0.0 | 0.05 | 13.41 | 0.00 | 2.234 | 5.96 | 0.57 | 0.2 | 99.8 | 0.0 | 1.74 | 0.73 | 0.79 | 4.26 | 3.1 | 0.002 | 0.54 | 0.0 | 0.05 | 14.87 | 0.00 | 2.195 | 7.99 | 1.71 | 1.5 | 98.5 | 0.0 | 1.32 | 0.36 | 0.74 | 0.81 | 3.46 | 3527 | 466 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7PM7 | 13523 | 2024-03-15 | 2021-09-02 | 3.5 | 3.92 | 3.46 | 3.4 | 0.004 | 0.85 | 1.0 | 0.05 | 15.67 | 0.01 | 1.316 | 5.26 | 0.09 | 0.2 | 99.8 | 0.0 | -1.31 | 0.90 | 0.84 | 3.49 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 15.81 | 0.00 | 1.959 | 8.87 | 1.11 | 1.9 | 98.1 | 0.0 | 1.82 | 2.24 | 0.90 | 0.84 | 3.06 | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PLY | 13506 | 2024-03-15 | 2021-09-01 | 3.2 | 3.79 | 3.37 | 3.5 | 0.016 | 1.49 | 0.0 | 0.07 | 15.96 | 0.01 | 2.228 | 3.82 | 0.00 | 0.2 | 99.8 | 0.0 | -1.06 | 0.89 | 0.85 | 2.92 | 3.6 | 0.003 | 0.85 | 0.0 | 0.04 | 16.66 | 0.00 | 2.076 | 6.64 | 0.55 | 1.2 | 98.8 | 0.0 | 1.75 | 0.68 | 0.85 | 0.84 | 1.93 | 10149 | 1258 | 4 | 0 | 4 | 0 | 0 | logfile |