Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GJ1	0009	2023-07-06	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	5XLP	6731	2023-07-05	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6PiG	20350	2023-07-13	2019-06-26	3.5	3.54	3.59	3.5	0.014	1.76	1.0	0.09	16.07	0.00	2.173	1.98	1.58	15.2	81.4	3.5	-4.85	0.60	0.76	2.54	3.5	0.003	0.79	0.0	0.04	17.21	0.01	2.110	11.30	0.26	15.5	84.0	0.5	-2.90	0.59	0.65	0.79	2.17	28867	3439	11	60	0	0	0	logfile
✘	7KVF	23049	2023-07-06	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11142	1374	1	0	0	0	0	logfile
✘	7KVE	23048	2023-07-06	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11142	1374	1	0	0	0	0	logfile
✔	6RAZ	4788	2023-07-17	2019-04-08	4.46	4.58	4.41	4.5	0.011	1.60	29.0	0.14	18.54	0.01	1.308	23.33	6.20	17.7	81.4	1.0	-5.70	0.65	0.65	—	4.5	0.004	0.87	0.0	0.05	15.47	0.01	2.098	21.18	0.15	13.2	86.7	0.0	-3.30	3.61	0.66	0.65	—	38294	4764	18	23	6	0	0	logfile
✔	5WRG	6679	2023-07-08	2016-12-01	4.3	4.45	—	4.3	0.007	1.40	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.004	1.00	0.0	0.05	12.31	0.00	2.019	20.07	0.00	18.0	81.8	0.1	-3.25	1.52	0.68	0.76	—	16317	2208	3	0	0	0	0	logfile
✔	7o7R	12754	2023-07-18	2021-04-13	3.9	4.51	—	4.3	0.013	1.33	8.0	0.07	16.35	0.01	1.912	20.97	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.005	1.01	0.0	0.05	17.36	0.01	1.920	31.74	0.67	12.7	87.2	0.1	-3.70	0.87	0.84	0.77	0.30	40530	5126	16	0	40	0	0	logfile
✔	6TNF	10531	2023-07-05	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	19.07	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.08	13.61	0.01	2.106	13.33	0.00	19.1	80.8	0.1	-3.46	0.54	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	5YFP	6827	2023-07-15	2017-09-21	4.4	8.20	—	6.7	0.006	1.35	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.005	1.05	0.0	0.05	11.10	0.00	2.021	30.50	0.10	19.1	80.6	0.3	-2.79	3.94	0.90	0.74	—	33096	5982	8	0	0	0	0	logfile
✔	7D43	30568	2023-07-14	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.49	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	6WUN	21917	2023-07-05	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	6HDD	0204	2023-07-13	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	7WSC	32753	2023-07-03	2022-01-28	3.78	4.01	—	4.0	0.013	1.67	5.0	0.10	15.39	0.01	1.600	41.09	4.99	14.7	81.6	3.6	-4.09	0.65	0.78	2.33	4.0	0.004	0.87	0.0	0.04	16.82	0.01	2.113	19.26	0.55	11.6	87.9	0.5	-2.53	1.27	0.64	0.77	1.88	3369	422	4	0	2	0	0	logfile
✔	6PYH	20524	2023-07-06	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.75	0.55	18.2	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.66	0.0	0.05	13.78	0.00	2.008	14.24	0.00	8.9	91.1	0.0	-2.30	0.64	0.84	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	6oKS	20103	2023-07-06	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	5ADY	3133	2023-07-17	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.89	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.004	0.72	0.0	0.04	17.25	0.01	1.860	27.36	0.00	12.1	86.9	1.0	-2.95	1.11	0.87	0.84	—	97364	4197	35	3020	2	0	0	logfile
✔	5H1S	9572	2023-07-15	2016-10-11	3.5	3.54	—	3.5	0.010	1.06	1.0	0.07	19.14	0.01	1.028	46.50	3.21	16.7	81.7	1.6	-4.90	0.78	0.77	1.92	3.5	0.006	0.81	0.0	0.04	18.60	0.01	1.899	15.14	1.37	12.6	87.1	0.4	-2.86	0.66	0.79	0.83	1.18	90825	3276	32	3018	0	0	0	logfile
✔	6CNC	7531	2023-07-19	2018-03-08	4.1	4.33	—	4.2	0.007	1.15	6.0	0.06	13.92	0.01	1.869	33.54	0.60	16.8	81.7	1.5	-5.05	0.74	0.69	—	4.2	0.003	0.82	0.0	0.05	15.39	0.00	2.108	16.84	0.02	11.0	88.0	1.0	-2.41	2.51	0.82	0.81	—	47836	5695	27	112	69	0	0	logfile
✔	7FG2	31574	2023-07-05	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile

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