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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TLY | 25990 | 2023-11-13 | 2022-01-19 | 3.0 | 3.01 | 2.93 | 3.0 | 0.010 | 1.32 | 2.0 | 0.08 | 9.97 | 0.00 | 2.556 | 1.69 | 0.00 | 2.5 | 97.5 | 0.0 | 0.36 | 0.64 | 0.76 | 4.98 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 13.83 | 0.00 | 2.186 | 3.71 | 2.81 | 3.3 | 96.7 | 0.0 | -0.93 | 1.02 | 0.68 | 0.82 | 4.76 | 3105 | 408 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SF7 | 25076 | 2023-11-14 | 2021-10-03 | 2.9 | 2.36 | — | 2.2 | 0.005 | 0.78 | 0.0 | 0.05 | 12.92 | 0.00 | 2.234 | 6.27 | 0.56 | 7.5 | 92.5 | 0.0 | -1.73 | 0.75 | 0.74 | 2.07 | 2.2 | 0.004 | 0.66 | 0.0 | 0.04 | 15.67 | 0.00 | 2.132 | 7.54 | 2.54 | 9.0 | 91.0 | 0.0 | -1.39 | 0.50 | 0.78 | 0.79 | 1.53 | 6776 | 879 | 5 | 0 | 0 | 3 | 0 | logfile |
✔ | 7NLL | 12465 | 2023-11-14 | 2021-02-22 | 2.89 | 3.42 | — | 3.2 | 0.003 | 0.55 | 0.0 | 0.26 | 10.85 | 0.00 | 2.255 | 7.02 | 0.00 | 0.6 | 99.4 | 0.0 | 1.34 | 0.80 | 0.82 | 3.17 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.88 | 0.00 | 2.220 | 8.36 | 3.07 | 2.3 | 97.5 | 0.2 | -0.33 | 1.58 | 0.82 | 0.87 | 3.19 | 5056 | 656 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Vo0 | 32048 | 2023-11-14 | 2021-10-12 | 3.4 | 3.66 | 3.41 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 21.10 | 0.00 | 1.938 | 7.44 | 0.17 | 1.8 | 98.2 | 0.0 | 0.39 | 0.73 | 0.66 | 1.10 | 3.6 | 0.003 | 0.55 | 0.0 | 0.03 | 22.81 | 0.00 | 1.975 | 10.81 | 0.34 | 1.9 | 98.1 | 0.0 | 1.47 | 1.39 | 0.83 | 0.82 | 1.47 | 7661 | 786 | 14 | 86 | 18 | 0 | 0 | logfile |
✔ | 7RYC | 24733 | 2023-11-14 | 2021-08-24 | 2.9 | 2.34 | — | 3.0 | 0.013 | 0.86 | 0.0 | 0.05 | 13.76 | 0.00 | 2.198 | 5.49 | 0.38 | 4.9 | 95.1 | 0.0 | -2.98 | 0.80 | 0.77 | 2.64 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.77 | 0.00 | 2.204 | 4.11 | 2.50 | 2.6 | 97.4 | 0.0 | -0.03 | 0.47 | 0.81 | 0.80 | 2.43 | 8277 | 1125 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-11-18 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RR0 | 24649 | 2023-11-13 | 2021-08-08 | 3.12 | 3.40 | — | 3.4 | 0.004 | 0.97 | 0.0 | 0.06 | 12.20 | 0.01 | 2.327 | 2.79 | 0.00 | 1.4 | 98.6 | 0.0 | 0.12 | 0.75 | 0.77 | 2.73 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 16.03 | 0.00 | 2.243 | 12.40 | 0.28 | 2.9 | 97.1 | 0.0 | 0.12 | 1.25 | 0.76 | 0.80 | 2.78 | 3297 | 422 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7VV4 | 32137 | 2023-11-13 | 2021-11-04 | 2.97 | 3.66 | — | 3.7 | 0.007 | 1.20 | 2.0 | 0.09 | 14.57 | 0.01 | 1.600 | 15.98 | 3.75 | 4.2 | 95.8 | 0.0 | -0.53 | 0.64 | 0.78 | 2.05 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 17.20 | 0.00 | 2.114 | 10.81 | 2.50 | 2.3 | 97.4 | 0.4 | 2.12 | 0.55 | 0.58 | 0.76 | 0.88 | 2181 | 269 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7ZYZ | 15029 | 2023-11-13 | 2022-05-25 | 2.47 | 2.56 | 2.40 | 2.2 | 0.007 | 0.87 | 0.0 | 0.05 | 18.66 | 0.01 | 1.973 | 9.47 | 5.45 | 2.8 | 97.2 | 0.0 | -0.23 | 0.87 | 0.87 | 3.85 | 2.2 | 0.003 | 0.53 | 0.0 | 0.04 | 18.47 | 0.00 | 2.092 | 7.60 | 4.36 | 1.9 | 98.1 | 0.0 | 0.72 | 0.42 | 0.88 | 0.88 | 3.32 | 4349 | 541 | 1 | 0 | 2 | 38 | 0 | logfile |
✔ | 8DC2 | 27320 | 2023-11-14 | 2022-06-15 | 2.99 | 2.48 | 3.03 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 17.64 | 0.00 | 2.216 | 11.65 | 0.16 | 3.0 | 97.0 | 0.0 | 1.17 | 0.82 | 0.83 | 2.49 | 3.0 | 0.005 | 0.71 | 0.0 | 0.04 | 19.50 | 0.00 | 2.095 | 13.77 | 2.74 | 4.8 | 95.2 | 0.0 | 0.52 | 0.40 | 0.84 | 0.85 | 3.05 | 7296 | 673 | 4 | 87 | 0 | 0 | 0 | logfile |
✔ | 7C8K | 30306 | 2023-11-14 | 2020-06-02 | 3.2 | 3.18 | — | 3.1 | 0.002 | 0.51 | 0.0 | 0.05 | 13.62 | 0.00 | 2.001 | 4.88 | 0.00 | 3.2 | 96.8 | 0.0 | -1.52 | 0.82 | 0.78 | 2.09 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 15.61 | 0.00 | 2.224 | 7.42 | 0.20 | 3.4 | 96.6 | 0.0 | 1.64 | 1.13 | 0.85 | 0.83 | 2.87 | 4853 | 596 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NK2 | 12429 | 2023-11-20 | 2021-02-17 | 4.84 | 4.93 | — | 4.8 | 0.004 | 0.73 | 2.0 | 0.05 | 13.61 | 0.01 | 1.907 | 8.81 | 0.32 | 4.3 | 95.7 | 0.0 | -0.71 | 0.61 | 0.43 | — | 4.8 | 0.003 | 0.66 | 0.0 | 0.04 | 13.83 | 0.00 | 1.914 | 17.59 | 0.00 | 5.7 | 94.3 | 0.0 | -0.91 | 4.61 | 0.73 | 0.68 | — | 28776 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7VVM | 32144 | 2023-11-14 | 2021-11-06 | 3.2 | 2.40 | 3.19 | 3.2 | 0.015 | 1.76 | 0.0 | 0.09 | 13.51 | 0.00 | 2.200 | 6.43 | 0.60 | 5.2 | 94.8 | 0.0 | -1.17 | 0.60 | 0.71 | 2.55 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 16.16 | 0.00 | 2.118 | 9.89 | 0.84 | 3.6 | 96.4 | 0.0 | 0.53 | 0.62 | 0.66 | 0.73 | 2.33 | 8507 | 1133 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKA | 12435 | 2023-11-20 | 2021-02-17 | 4.07 | 4.20 | — | 4.1 | 0.004 | 0.67 | 0.0 | 0.04 | 13.49 | 0.00 | 1.908 | 8.61 | 0.00 | 4.0 | 96.0 | 0.0 | -0.66 | 0.63 | 0.51 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.40 | 0.00 | 1.868 | 13.76 | 0.00 | 4.4 | 95.6 | 0.0 | -0.52 | 1.92 | 0.74 | 0.69 | — | 28778 | 1796 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 8T7A | 41089 | 2023-11-16 | 2023-06-20 | 2.8 | 2.99 | 2.78 | 3.0 | 0.005 | 0.71 | 0.0 | 0.05 | 13.42 | 0.01 | 2.212 | 7.47 | 0.66 | 2.0 | 98.0 | 0.0 | 0.46 | 0.70 | 0.83 | 3.76 | 3.0 | 0.005 | 0.61 | 0.0 | 0.05 | 15.36 | 0.00 | 2.137 | 6.43 | 2.82 | 2.3 | 97.7 | 0.0 | 0.69 | 0.36 | 0.72 | 0.86 | 3.91 | 15819 | 2040 | 15 | 0 | 3 | 0 | 0 | logfile |
✔ | 8SPo | 40680 | 2023-11-20 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 16.49 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.004 | 0.73 | 0.0 | 0.04 | 18.26 | 0.00 | 1.816 | 13.01 | 2.09 | 6.6 | 93.4 | 0.0 | -1.23 | 1.36 | 0.57 | 0.49 | 1.10 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 7WM0 | 32596 | 2023-11-13 | 2022-01-14 | 3.35 | 3.62 | — | 3.7 | 0.009 | 1.22 | 0.0 | 0.08 | 12.61 | 0.01 | 2.405 | 9.08 | 0.28 | 5.4 | 94.6 | 0.0 | -2.87 | 0.69 | 0.56 | 0.97 | 3.6 | 0.004 | 0.84 | 0.0 | 0.05 | 15.59 | 0.00 | 2.067 | 16.04 | 0.55 | 6.4 | 93.6 | 0.0 | -1.58 | 1.76 | 0.76 | 0.68 | 1.10 | 3376 | 432 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7MFE | 23814 | 2023-11-14 | 2021-04-09 | 4.07 | 3.82 | — | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 15.26 | 0.00 | 1.387 | 18.00 | 0.41 | 6.6 | 93.4 | 0.0 | -2.56 | 0.63 | 0.64 | — | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.41 | 0.00 | 2.119 | 16.38 | 0.00 | 5.6 | 94.4 | 0.0 | -1.25 | 0.57 | 0.62 | 0.63 | — | 6844 | 859 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SF8 | 25077 | 2023-11-14 | 2021-10-03 | 2.7 | 2.25 | — | 2.1 | 0.005 | 0.74 | 0.0 | 0.05 | 13.03 | 0.00 | 2.270 | 4.24 | 0.14 | 4.7 | 95.3 | 0.0 | 0.40 | 0.80 | 0.80 | 3.25 | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 15.86 | 0.00 | 2.153 | 4.39 | 2.09 | 4.5 | 95.5 | 0.0 | 0.95 | 1.00 | 0.82 | 0.84 | 3.40 | 6661 | 860 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LD4 | 23281 | 2023-11-14 | 2021-01-12 | 3.3 | 3.47 | 3.24 | 3.4 | 0.008 | 1.12 | 0.0 | 0.07 | 12.43 | 0.01 | 2.270 | 3.57 | 0.26 | 3.0 | 97.0 | 0.0 | -0.88 | 0.71 | 0.79 | 3.50 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.25 | 0.00 | 2.203 | 8.78 | 0.26 | 1.8 | 98.2 | 0.0 | 0.75 | 0.53 | 0.79 | 0.85 | 2.32 | 6981 | 887 | 4 | 0 | 1 | 1 | 0 | logfile |