Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TLY	25990	2023-11-13	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	9.97	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.62	0.0	0.04	13.83	0.00	2.186	3.71	2.81	3.3	96.7	0.0	-0.93	1.02	0.68	0.82	4.76	3105	408	4	0	4	0	0	logfile
✔	7SF7	25076	2023-11-14	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.2	0.004	0.66	0.0	0.04	15.67	0.00	2.132	7.54	2.54	9.0	91.0	0.0	-1.39	0.50	0.78	0.79	1.53	6776	879	5	0	0	3	0	logfile
✔	7NLL	12465	2023-11-14	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	10.85	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.65	0.0	0.04	14.88	0.00	2.220	8.36	3.07	2.3	97.5	0.2	-0.33	1.58	0.82	0.87	3.19	5056	656	6	0	2	0	0	logfile
✔	7Vo0	32048	2023-11-14	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.10	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.003	0.55	0.0	0.03	22.81	0.00	1.975	10.81	0.34	1.9	98.1	0.0	1.47	1.39	0.83	0.82	1.47	7661	786	14	86	18	0	0	logfile
✔	7RYC	24733	2023-11-14	2021-08-24	2.9	2.34	—	3.0	0.013	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.003	0.62	0.0	0.04	15.77	0.00	2.204	4.11	2.50	2.6	97.4	0.0	-0.03	0.47	0.81	0.80	2.43	8277	1125	6	0	2	0	0	logfile
✘	8EAo	27792	2023-11-18	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7RR0	24649	2023-11-13	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.20	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.73	0.0	0.04	16.03	0.00	2.243	12.40	0.28	2.9	97.1	0.0	0.12	1.25	0.76	0.80	2.78	3297	422	4	0	1	0	0	logfile
✔	7VV4	32137	2023-11-13	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.76	0.0	0.04	17.20	0.00	2.114	10.81	2.50	2.3	97.4	0.4	2.12	0.55	0.58	0.76	0.88	2181	269	3	0	1	0	0	logfile
✔	7ZYZ	15029	2023-11-13	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.53	0.0	0.04	18.47	0.00	2.092	7.60	4.36	1.9	98.1	0.0	0.72	0.42	0.88	0.88	3.32	4349	541	1	0	2	38	0	logfile
✔	8DC2	27320	2023-11-14	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	17.64	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.0	0.005	0.71	0.0	0.04	19.50	0.00	2.095	13.77	2.74	4.8	95.2	0.0	0.52	0.40	0.84	0.85	3.05	7296	673	4	87	0	0	0	logfile
✔	7C8K	30306	2023-11-14	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.62	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.002	0.53	0.0	0.04	15.61	0.00	2.224	7.42	0.20	3.4	96.6	0.0	1.64	1.13	0.85	0.83	2.87	4853	596	3	0	6	0	0	logfile
✔	7NK2	12429	2023-11-20	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.003	0.66	0.0	0.04	13.83	0.00	1.914	17.59	0.00	5.7	94.3	0.0	-0.91	4.61	0.73	0.68	—	28776	1794	6	23	0	0	13868	logfile
✔	7VVM	32144	2023-11-14	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.58	0.0	0.04	16.16	0.00	2.118	9.89	0.84	3.6	96.4	0.0	0.53	0.62	0.66	0.73	2.33	8507	1133	6	0	0	0	0	logfile
✔	7NKA	12435	2023-11-20	2021-02-17	4.07	4.20	—	4.1	0.004	0.67	0.0	0.04	13.49	0.00	1.908	8.61	0.00	4.0	96.0	0.0	-0.66	0.63	0.51	—	4.1	0.003	0.65	0.0	0.04	14.40	0.00	1.868	13.76	0.00	4.4	95.6	0.0	-0.52	1.92	0.74	0.69	—	28778	1796	6	23	0	0	13868	logfile
✔	8T7A	41089	2023-11-16	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.71	0.0	0.05	13.42	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.005	0.61	0.0	0.05	15.36	0.00	2.137	6.43	2.82	2.3	97.7	0.0	0.69	0.36	0.72	0.86	3.91	15819	2040	15	0	3	0	0	logfile
✔	8SPo	40680	2023-11-20	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	16.49	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.73	0.0	0.04	18.26	0.00	1.816	13.01	2.09	6.6	93.4	0.0	-1.23	1.36	0.57	0.49	1.10	31307	3428	22	154	6	0	0	logfile
✔	7WM0	32596	2023-11-13	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.61	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.84	0.0	0.05	15.59	0.00	2.067	16.04	0.55	6.4	93.6	0.0	-1.58	1.76	0.76	0.68	1.10	3376	432	4	0	1	0	0	logfile
✔	7MFE	23814	2023-11-14	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.003	0.69	0.0	0.04	15.41	0.00	2.119	16.38	0.00	5.6	94.4	0.0	-1.25	0.57	0.62	0.63	—	6844	859	4	0	2	0	0	logfile
✔	7SF8	25077	2023-11-14	2021-10-03	2.7	2.25	—	2.1	0.005	0.74	0.0	0.05	13.03	0.00	2.270	4.24	0.14	4.7	95.3	0.0	0.40	0.80	0.80	3.25	2.1	0.004	0.58	0.0	0.04	15.86	0.00	2.153	4.39	2.09	4.5	95.5	0.0	0.95	1.00	0.82	0.84	3.40	6661	860	4	0	0	0	0	logfile
✔	7LD4	23281	2023-11-14	2021-01-12	3.3	3.47	3.24	3.4	0.008	1.12	0.0	0.07	12.43	0.01	2.270	3.57	0.26	3.0	97.0	0.0	-0.88	0.71	0.79	3.50	3.4	0.003	0.61	0.0	0.04	15.25	0.00	2.203	8.78	0.26	1.8	98.2	0.0	0.75	0.53	0.79	0.85	2.32	6981	887	4	0	1	1	0	logfile

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