Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SF7	25076	2023-04-20	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.2	0.004	0.66	0.0	0.04	15.67	0.00	2.132	7.54	2.54	9.0	91.0	0.0	-1.39	0.50	0.78	0.79	1.53	6776	879	5	0	0	3	0	logfile
✔	7QEo	13935	2023-04-19	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.64	0.0	0.04	15.50	0.00	2.182	6.20	0.91	3.1	96.9	0.0	2.77	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7NLL	12465	2023-04-20	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	10.85	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.65	0.0	0.04	14.88	0.00	2.220	8.36	3.07	2.3	97.5	0.2	-0.33	1.58	0.82	0.87	3.19	5056	656	6	0	2	0	0	logfile
✔	7Vo9	32049	2023-04-20	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.08	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.005	0.73	0.0	0.04	27.04	0.00	1.910	21.50	1.52	1.2	98.8	0.0	0.77	1.11	0.78	0.68	0.19	5711	524	10	86	12	0	0	logfile
✔	7DDo	30655	2023-04-20	2020-10-29	3.4	3.24	—	3.2	0.003	0.55	0.0	0.04	14.15	0.00	2.062	7.30	0.00	2.5	97.5	0.0	-1.39	0.73	0.79	2.11	3.2	0.003	0.60	0.0	0.04	15.91	0.00	2.015	10.63	0.29	2.5	97.5	0.0	0.86	0.33	0.74	0.81	2.42	6468	791	4	0	5	0	0	logfile
✔	7Vo0	32048	2023-04-20	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.10	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.004	0.58	0.0	0.04	22.99	0.00	1.907	11.51	0.17	2.1	97.9	0.0	1.05	1.39	0.83	0.83	1.44	7661	786	14	86	18	0	0	logfile
✔	7RYC	24733	2023-04-20	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.002	0.59	0.0	0.04	15.68	0.00	2.224	3.93	1.62	2.3	97.7	0.0	0.16	0.48	0.82	0.81	2.24	8277	1125	6	0	2	0	0	logfile
✔	7VDH	31918	2023-04-20	2021-09-07	2.9	3.12	—	3.0	0.011	1.39	0.0	0.08	13.80	0.01	2.232	4.34	0.00	2.8	97.2	0.0	-2.38	0.75	0.83	3.85	3.0	0.003	0.71	0.0	0.04	16.07	0.00	2.078	9.49	0.96	2.8	97.2	0.0	0.60	0.51	0.76	0.85	2.84	8710	1109	6	0	2	0	0	logfile
✔	7RR0	24649	2023-04-20	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.20	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.73	0.0	0.04	16.03	0.00	2.243	12.40	0.28	2.9	97.1	0.0	0.12	1.25	0.76	0.80	2.78	3297	422	4	0	1	0	0	logfile
✔	6M6B	30118	2023-04-28	2020-03-14	4.1	4.19	—	4.1	0.007	0.95	0.0	0.06	16.85	0.01	2.133	12.35	0.38	5.5	94.5	0.0	-3.41	0.79	0.76	—	4.1	0.003	0.63	0.0	0.04	15.92	0.00	1.984	12.90	0.00	4.3	95.7	0.0	-0.66	1.51	0.85	0.82	—	28180	3417	10	56	4	0	0	logfile
✔	7VV4	32137	2023-04-19	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.76	0.0	0.04	17.20	0.00	2.114	10.81	2.50	2.3	97.4	0.4	2.12	0.55	0.58	0.76	0.88	2181	269	3	0	1	0	0	logfile
✔	7ZZ5	15035	2023-04-20	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.33	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.58	0.0	0.04	17.12	0.00	2.183	9.12	1.60	3.3	96.7	0.0	0.44	0.32	0.89	0.89	3.82	3633	461	1	0	2	0	0	logfile
✔	7SRS	25403	2023-04-22	2021-11-08	3.3	2.62	—	3.4	0.005	0.66	0.0	0.05	12.77	0.00	2.242	4.06	0.23	3.4	96.6	0.0	0.87	0.85	0.84	3.41	3.3	0.004	0.62	0.0	0.04	14.43	0.00	2.273	4.49	0.23	4.3	95.7	0.1	0.41	0.39	0.86	0.86	2.83	8361	1103	7	0	2	0	0	logfile
✔	7ZYZ	15029	2023-04-20	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.53	0.0	0.04	18.47	0.00	2.092	7.60	4.36	1.9	98.1	0.0	0.72	0.42	0.88	0.88	3.32	4349	541	1	0	2	38	0	logfile
✔	8DC2	27320	2023-04-20	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	17.64	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.003	0.65	0.0	0.04	19.28	0.00	2.229	12.67	1.93	4.0	96.0	0.0	0.74	0.36	0.83	0.85	2.50	7296	673	4	87	0	0	0	logfile
✔	6QYJ	4678	2023-04-27	2019-03-09	3.4	2.68	—	3.4	0.004	0.87	0.0	0.05	9.70	0.01	2.246	5.76	0.00	6.5	93.5	0.0	-4.69	0.63	0.60	2.63	3.1	0.005	0.81	0.0	0.05	17.45	0.00	2.095	12.91	0.78	4.2	95.5	0.2	0.11	3.84	0.78	0.80	2.69	25956	3168	12	0	0	0	0	logfile
✔	7C8K	30306	2023-04-21	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.62	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	3.2	0.002	0.53	0.0	0.04	15.61	0.00	2.224	7.42	0.20	3.4	96.6	0.0	1.64	1.13	0.85	0.83	2.87	4853	596	3	0	6	0	0	logfile
✔	7T4S	25687	2023-04-24	2021-12-10	3.1	2.40	—	2.7	0.004	0.64	0.0	0.04	13.17	0.01	2.204	7.59	0.00	3.1	96.9	0.0	-0.13	0.80	0.78	3.71	2.7	0.003	0.64	0.0	0.04	15.93	0.00	2.144	9.35	0.39	3.2	96.8	0.0	0.24	0.43	0.82	0.81	2.83	16404	2045	14	0	10	0	0	logfile
✔	7SK0	25168	2023-04-20	2021-10-19	3.33	3.63	2.74	3.6	0.009	1.04	0.0	0.06	14.22	0.01	2.005	3.11	0.44	4.3	95.7	0.0	0.35	0.47	0.66	1.21	3.6	0.004	0.75	0.0	0.04	15.92	0.00	2.171	12.31	0.22	2.5	97.5	0.0	2.04	0.59	0.48	0.69	1.78	4168	514	4	0	7	0	0	logfile
✔	7WLR	32591	2023-04-22	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.42	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.004	0.56	0.0	0.03	28.58	0.00	2.194	6.62	0.16	2.4	97.6	0.0	2.98	1.22	0.78	0.83	2.36	11922	754	10	290	0	0	0	logfile

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