Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZQ	26916	2023-11-17	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.32	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	6KQK	0753	2023-11-15	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.49	0.00	1.782	9.69	0.69	4.1	95.9	0.0	0.23	0.79	0.82	0.86	4.20	63373	3936	24	0	48	0	31225	logfile
✔	7MXY	24076	2023-11-18	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.008	0.70	0.0	0.04	18.27	0.00	1.942	15.77	5.36	4.4	95.6	0.0	0.16	1.13	0.53	0.70	2.51	22265	1406	12	0	5	2	11129	logfile
✔	7UTD	26767	2023-11-13	2022-04-26	2.19	3.00	2.25	2.5	0.060	2.36	28.0	1.00	15.03	0.02	1.964	8.43	1.36	2.2	97.7	0.1	-0.03	0.71	0.61	3.58	2.6	0.005	1.93	0.0	0.08	15.64	0.00	1.523	16.31	1.27	2.9	97.1	0.0	0.37	1.33	0.88	0.85	3.78	54200	6908	36	0	64	0	0	logfile
✔	8DBG	27283	2023-11-16	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	7DRT	30827	2023-11-14	2020-12-29	2.2	2.32	—	2.3	0.011	1.32	9.0	0.09	13.11	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.69	0.0	0.04	17.21	0.01	2.239	10.06	5.03	6.4	93.5	0.1	-0.37	1.11	0.64	0.77	2.79	6849	830	7	0	7	10	0	logfile
✔	6DRV	8908	2023-11-21	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	3.99	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.004	0.73	0.0	0.05	16.34	0.00	2.161	6.53	1.28	2.7	97.2	0.0	0.28	1.48	0.74	0.89	5.92	32888	4096	4	0	0	0	0	logfile
✔	7XTG	33448	2023-11-16	2022-05-17	2.2	2.41	2.26	2.5	0.004	0.76	0.0	0.04	18.28	0.01	2.094	13.57	2.55	4.4	95.4	0.1	-0.48	0.60	0.72	1.71	2.4	0.003	0.63	0.0	0.04	17.43	0.00	2.254	8.13	2.36	3.5	96.3	0.1	2.06	2.09	0.67	0.89	2.88	15435	2034	15	0	3	0	0	logfile
✔	8DBF	27282	2023-11-20	2022-06-14	2.2	2.32	2.21	2.3	0.014	0.99	0.0	0.05	17.66	0.05	1.866	9.33	3.08	4.1	95.9	0.0	0.97	0.74	0.87	5.47	2.3	0.003	1.61	0.0	0.05	17.73	0.00	1.853	5.92	1.93	2.2	97.8	0.0	0.39	1.14	0.75	0.89	5.72	29964	3792	36	0	60	84	0	logfile
✔	8G3K	29700	2023-11-13	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	17.12	0.00	2.333	3.72	0.41	0.7	99.3	0.0	4.78	1.17	0.47	0.83	4.98	2244	285	2	0	0	0	0	logfile
✘	8BKB	16095	2023-11-21	2022-11-08	2.2	1.97	2.09	2.0	0.003	0.61	0.0	0.04	17.88	0.00	2.225	1.59	1.40	1.4	98.6	0.0	4.82	0.71	0.86	6.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35139	4128	54	0	6	1317	0	logfile
✔	8F2A	28810	2023-11-15	2022-11-07	2.2	2.40	2.32	2.5	0.011	0.60	0.0	0.05	13.84	0.00	2.188	4.68	0.76	1.7	98.3	0.0	-2.70	0.65	0.84	4.09	2.5	0.002	0.55	0.0	0.04	16.16	0.00	2.197	6.71	1.80	1.4	98.6	0.0	0.79	0.52	0.64	0.83	3.71	10044	1276	9	0	5	0	0	logfile
✔	6WZ5	21970	2023-11-15	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.004	0.59	0.0	0.03	29.22	0.00	2.154	6.07	0.93	1.7	98.3	0.0	2.78	0.90	0.86	0.89	3.76	12443	774	10	306	0	0	0	logfile
✔	8GHD	40041	2023-11-21	2023-03-09	2.2	2.57	—	2.5	0.007	1.07	0.0	0.05	14.42	0.01	2.189	4.90	0.00	2.1	97.9	0.0	0.43	0.78	0.90	5.27	2.4	0.005	0.58	0.0	0.04	16.60	0.01	2.192	9.26	1.02	2.2	97.8	0.0	1.38	0.97	0.77	0.91	5.18	32220	3972	12	0	18	0	0	logfile
✔	8oQ7	17107	2023-11-16	2023-04-11	2.2	2.13	2.08	2.2	0.009	0.90	0.0	0.09	11.00	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.004	0.66	0.0	0.04	14.48	0.00	2.108	1.61	1.33	2.1	97.9	0.0	2.06	1.02	0.73	0.86	5.76	14702	1680	15	0	57	505	0	logfile
✘	7W9K	32368	2023-11-16	2021-12-09	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14933	1705	9	0	43	9	0	logfile
✔	8GVK	32099	2023-11-13	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	7P6B	13224	2023-11-13	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✘	7ZP8	14850	2023-11-20	2022-04-26	2.2	3.37	2.30	2.5	0.008	1.05	2.0	0.11	19.16	0.00	1.813	5.05	1.68	4.7	95.1	0.2	-0.45	0.78	0.87	4.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90951	3145	32	3095	0	0	0	logfile
✘	8G3V	29710	2023-11-17	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	13.68	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20045	2500	28	0	61	0	0	logfile

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