Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SK4	25172	2023-08-13	2021-10-19	3.3	3.73	—	3.6	0.003	0.50	0.0	0.05	14.48	0.00	2.086	5.89	0.00	5.6	94.4	0.0	-0.26	0.68	0.79	1.76	3.6	0.003	0.51	0.0	0.04	15.54	0.00	2.068	7.17	0.14	5.6	94.4	0.0	0.05	0.26	0.68	0.80	1.59	13145	831	7	0	2	0	6489	logfile
✔	7V7o	31776	2023-08-18	2021-08-21	2.9	3.72	—	3.2	0.007	0.69	0.0	0.05	13.84	0.00	2.158	7.07	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.011	0.79	0.0	0.05	15.17	0.00	2.088	8.57	1.04	5.9	94.0	0.1	-0.19	0.26	0.89	0.88	2.12	25325	3092	41	0	83	0	0	logfile
✔	7Y13	33555	2023-08-09	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	8HBH	34632	2023-08-10	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.08	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.57	0.0	0.04	15.40	0.00	1.106	9.41	0.22	2.1	97.9	0.0	0.67	0.27	0.72	0.81	2.49	8502	1099	4	0	5	0	0	logfile
✔	7YiD	33855	2023-08-16	2022-07-16	3.4	3.71	3.49	3.7	0.003	0.56	0.0	0.04	13.96	0.00	2.216	7.32	0.00	6.6	93.1	0.3	-0.75	0.65	0.81	3.12	3.7	0.002	0.51	0.0	0.04	15.58	0.00	2.209	6.64	0.21	6.4	93.3	0.3	-0.04	0.27	0.65	0.84	2.40	21326	2640	8	0	6	8	0	logfile
✔	7FCi	31526	2023-08-09	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.61	0.0	0.04	16.12	0.01	2.252	7.71	0.31	3.0	97.0	0.0	0.69	0.27	0.68	0.86	2.38	5613	734	3	0	0	0	0	logfile
✔	8D8o	27253	2023-08-12	2022-06-08	3.35	3.59	3.32	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.003	0.54	0.0	0.04	16.20	0.00	2.200	7.23	0.23	5.2	94.8	0.0	-0.60	0.27	0.73	0.82	2.29	11819	1536	2	0	1	0	0	logfile
✔	7RX5	24725	2023-08-11	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	7WUG	32830	2023-08-15	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.51	0.0	0.04	15.01	0.00	2.140	5.28	0.22	3.4	96.5	0.0	1.41	0.27	0.78	0.87	1.92	17515	2239	5	0	0	0	0	logfile
✔	8SoY	40671	2023-08-11	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.004	0.60	0.0	0.05	15.57	0.01	2.316	3.01	3.62	2.5	97.5	0.0	-0.03	0.27	0.70	0.83	1.52	10074	1422	6	0	0	0	0	logfile
✔	7W4C	32300	2023-08-15	2021-11-27	2.7	2.83	—	2.8	0.007	0.82	0.0	0.04	18.50	0.01	2.188	7.03	1.33	3.4	96.5	0.1	0.86	0.80	0.89	3.32	2.8	0.002	0.53	0.0	0.04	17.52	0.00	2.146	6.93	1.79	3.5	96.4	0.0	1.26	0.27	0.78	0.88	3.06	68216	8270	69	0	47	0	0	logfile
✔	7UZ3	26874	2023-08-15	2022-05-08	2.35	2.21	2.35	2.2	0.006	0.85	0.0	0.08	16.43	0.01	2.063	2.87	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.54	0.0	0.04	16.06	0.00	2.092	6.59	0.84	2.2	97.8	0.0	1.78	0.27	0.63	0.87	5.22	18415	1114	10	0	20	153	9100	logfile
✔	7USW	26741	2023-08-13	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.91	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.01	0.00	2.249	5.38	0.35	3.2	96.8	0.0	2.29	0.27	0.63	0.82	2.11	14322	1676	12	0	68	0	0	logfile
✔	8D0K	27107	2023-08-21	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.52	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.56	0.0	0.04	14.95	0.00	2.156	11.62	0.00	4.9	95.0	0.1	0.53	0.27	0.82	0.81	—	31011	3820	8	20	0	0	0	logfile
✔	7TMQ	25999	2023-08-21	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.004	0.54	0.0	0.04	13.96	0.00	1.947	9.19	0.38	2.9	97.1	0.0	1.25	0.27	0.79	0.86	2.79	31642	4736	16	0	2	0	0	logfile
✔	8FNi	29314	2023-08-20	2022-12-27	3.4	3.51	3.41	3.4	0.002	0.50	0.0	0.04	14.97	0.00	2.247	7.14	0.03	2.3	97.7	0.0	1.46	0.78	0.82	1.66	3.4	0.004	0.55	0.0	0.04	15.85	0.00	2.154	8.06	0.23	2.9	97.1	0.0	1.88	0.27	0.79	0.84	1.38	28858	3559	11	37	0	0	0	logfile
✔	7UUR	26801	2023-08-13	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.007	2.49	0.0	0.07	14.70	0.01	1.611	10.87	0.29	2.1	97.9	0.0	0.19	0.27	0.77	0.88	7.79	13683	1668	12	0	18	603	0	logfile
✔	7o6E	12738	2023-08-23	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile
✔	7Y83	33679	2023-08-14	2022-06-22	2.93	3.17	3.05	3.2	0.004	0.57	0.0	0.04	19.42	0.00	1.923	18.19	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.003	0.59	0.0	0.04	19.49	0.00	1.951	18.16	6.56	3.0	97.0	0.0	0.18	0.27	0.63	0.79	2.46	16300	1861	5	59	5	0	0	logfile
✔	7MTS	23996	2023-08-14	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.11	0.01	2.213	4.48	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.25	0.00	2.164	3.65	0.13	2.5	97.5	0.0	0.61	0.27	0.83	0.86	2.40	16068	2150	7	0	3	0	0	logfile

• ← previous
• Page 7 of 542
• next →