Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BoG	12242	2023-07-15	2021-01-25	2.75	3.15	2.81	2.9	0.007	0.62	0.0	0.04	13.91	0.02	1.937	5.87	0.00	3.0	97.0	0.0	-1.93	0.87	0.91	3.29	2.9	0.006	0.65	0.0	0.04	14.63	0.01	1.886	9.69	2.55	3.4	96.6	0.0	0.16	1.12	0.87	0.92	2.70	33589	1336	16	1071	105	0	0	logfile
✔	7UDS	26458	2023-07-08	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	13.46	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.71	0.0	0.05	15.60	0.00	2.095	11.66	0.54	4.8	95.2	0.0	-0.41	1.13	0.75	0.73	2.24	17032	2094	32	0	53	0	0	logfile
✔	7RTW	24691	2023-07-03	2021-08-15	3.23	3.74	—	3.7	0.004	0.68	0.0	0.05	14.68	0.00	2.213	9.12	0.00	3.9	96.1	0.0	2.01	0.60	0.70	0.84	3.7	0.003	0.63	0.0	0.04	16.75	0.00	2.275	7.80	0.34	3.6	96.4	0.0	2.62	0.36	0.60	0.72	0.97	5644	701	8	0	17	0	0	logfile
✔	5UQ8	8597	2023-07-24	2017-02-07	3.2	3.24	—	3.2	0.009	0.76	0.0	0.04	15.80	0.02	1.881	46.69	0.00	7.6	92.3	0.1	-3.58	0.63	0.71	2.81	3.2	0.009	0.80	0.0	0.04	17.27	0.01	1.637	53.30	1.57	9.4	90.6	0.1	-1.75	0.67	0.72	0.85	2.39	148590	6027	63	4708	7	0	4	logfile
✔	6DNF	7971	2023-07-07	2018-06-06	3.2	4.05	—	4.0	0.009	1.06	0.0	0.04	9.26	0.01	2.295	2.79	0.00	4.6	95.4	0.0	-1.20	0.59	0.77	2.69	4.0	0.004	0.59	0.0	0.04	14.88	0.00	2.039	8.51	0.56	4.8	95.2	0.0	2.58	1.57	0.55	0.73	2.77	14119	900	8	0	11	0	6868	logfile
✔	7WR8	32718	2023-07-03	2022-01-26	3.5	3.74	—	3.8	0.008	1.16	0.0	0.06	13.75	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.68	0.0	0.05	15.46	0.00	2.127	12.59	0.28	10.0	90.0	0.0	-2.63	0.36	0.49	0.77	2.73	3286	417	4	0	3	0	0	logfile
✔	7YR1	34042	2023-07-14	2022-08-08	3.62	3.91	3.63	3.8	0.004	0.66	0.0	0.05	13.70	0.00	2.141	8.03	0.00	9.0	91.0	0.0	-1.68	0.78	0.84	2.50	3.8	0.003	0.57	0.0	0.04	15.14	0.00	2.134	8.21	0.09	8.4	91.5	0.1	-1.75	0.31	0.78	0.84	2.29	30336	3768	36	0	81	0	0	logfile
✔	5L3P	4001	2023-07-25	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.34	0.02	2.115	7.18	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.007	1.28	4.0	0.06	18.96	0.01	1.742	61.81	1.02	12.1	87.1	0.8	-2.95	2.41	0.68	0.46	-0.03	149606	6419	58	4704	76	0	0	logfile
✔	7Z22	14455	2023-07-09	2022-02-25	2.95	3.65	3.03	3.3	0.003	0.51	0.0	0.04	11.34	0.00	2.198	6.76	0.00	1.8	98.2	0.0	2.55	0.53	0.47	1.52	3.4	0.003	0.77	0.0	0.04	16.88	0.00	2.263	9.93	3.87	2.1	97.9	0.0	2.88	1.90	0.71	0.88	2.84	18492	2268	12	0	0	0	0	logfile
✔	7QD4	13906	2023-07-09	2021-11-26	2.9	3.11	2.96	3.0	0.004	0.82	0.0	0.05	21.92	0.01	2.227	3.43	0.00	2.2	97.8	0.0	-0.77	0.74	0.74	2.94	3.0	0.004	0.57	0.0	0.04	23.16	0.00	2.177	9.13	1.16	2.8	97.2	0.0	2.00	0.88	0.79	0.83	2.16	19118	1816	6	216	0	0	0	logfile
✔	7SEF	25067	2023-07-08	2021-09-30	3.55	4.41	3.51	3.5	0.005	0.67	0.0	0.04	10.54	0.00	2.266	3.73	0.00	6.2	93.8	0.0	-2.07	0.90	0.85	1.80	3.6	0.003	0.69	0.0	0.04	11.83	0.00	2.273	11.43	0.11	4.7	95.3	0.0	-1.08	2.68	0.91	0.88	2.90	17154	2256	6	0	0	0	0	logfile
✔	7UX1	26845	2023-07-13	2022-05-04	3.48	2.70	3.65	2.1	0.003	0.56	0.0	0.04	12.46	0.00	2.260	6.32	0.00	2.7	97.3	0.0	3.19	0.76	0.72	1.53	1.6	0.003	0.60	0.0	0.04	13.17	0.00	1.924	7.64	0.57	3.7	96.3	0.0	2.02	0.45	0.77	0.76	1.70	28931	4991	7	0	0	0	0	logfile
✔	7WGC	32483	2023-07-04	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.002	0.61	0.0	0.04	16.25	0.00	2.170	10.73	0.43	4.2	95.8	0.0	0.33	0.37	0.56	0.54	0.98	6527	795	4	0	5	0	0	logfile
✔	6RRS	4989	2023-07-16	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	5JU8	8176	2023-07-19	2016-05-10	3.6	3.15	—	3.2	0.015	1.74	0.0	0.07	12.18	0.01	1.433	6.13	0.00	7.3	90.0	2.7	-1.92	0.64	0.62	0.69	3.1	0.004	0.75	0.0	0.04	15.79	0.01	1.938	15.92	0.74	8.8	90.5	0.7	-2.09	1.83	0.69	0.74	1.19	145158	5624	57	4712	1	0	0	logfile
✔	7NAX	12251	2023-07-20	2021-01-25	2.96	3.19	2.99	2.9	0.008	0.69	2.0	0.04	14.66	0.02	1.876	9.97	0.00	4.0	96.0	0.0	-2.25	0.78	0.69	2.05	2.9	0.005	0.68	0.0	0.04	15.74	0.01	1.838	15.78	3.62	4.0	96.0	0.0	-0.48	1.26	0.86	0.89	2.09	51345	2342	22	1526	182	0	0	logfile
✔	7PTR	13634	2023-07-15	2021-09-27	3.46	4.28	3.39	3.8	0.002	0.47	0.0	0.04	9.81	0.00	2.195	6.90	0.00	3.0	97.0	0.0	-0.08	0.75	0.80	1.24	3.9	0.002	0.52	0.0	0.04	12.69	0.00	2.112	8.76	0.20	3.2	96.8	0.0	-0.76	0.47	0.75	0.83	1.14	31704	4350	12	0	36	0	0	logfile
✔	8DXo	27771	2023-07-08	2022-08-02	3.6	3.87	3.62	3.8	0.002	0.53	0.0	0.04	14.80	0.00	2.195	4.89	0.00	6.5	93.5	0.0	0.37	0.68	0.75	1.60	3.8	0.003	0.57	0.0	0.04	16.91	0.00	2.189	6.73	0.52	6.6	93.4	0.0	0.86	1.20	0.68	0.79	1.28	17499	2101	7	0	0	0	0	logfile
✔	7V78	31762	2023-07-12	2021-08-21	3.4	3.85	—	3.7	0.005	0.63	0.0	0.05	13.65	0.00	2.142	6.37	0.00	5.4	94.5	0.1	-0.20	0.74	0.77	2.64	3.7	0.008	0.73	0.0	0.05	15.13	0.00	2.107	7.37	0.44	6.4	93.5	0.1	-0.70	0.36	0.79	0.84	2.48	25677	3123	41	0	90	0	0	logfile
✔	7V76	31760	2023-07-12	2021-08-21	3.2	3.71	—	3.6	0.004	0.58	0.0	0.05	13.70	0.00	2.164	6.14	0.00	4.5	95.5	0.0	0.02	0.78	0.80	2.16	3.6	0.004	0.59	0.0	0.05	15.16	0.00	2.082	6.48	0.22	5.1	94.9	0.1	-0.10	0.34	0.80	0.84	2.03	25219	3088	37	0	77	0	0	logfile

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