Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VX5	21430	2023-11-15	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	5L4K	4002	2023-11-19	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	7K4D	22665	2023-11-17	2020-09-15	3.66	4.18	—	4.3	0.010	1.22	0.0	0.06	12.05	0.01	2.205	3.98	0.38	9.1	90.9	0.0	-6.15	0.51	0.74	2.06	4.3	0.003	0.75	0.0	0.04	16.29	0.00	2.129	9.75	0.56	6.6	93.4	0.0	-1.56	0.86	0.54	0.76	1.33	19801	2448	8	0	7	0	0	logfile
✔	7DGZ	30676	2023-11-14	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	6M4G	30077	2023-11-14	2020-03-06	2.8	3.16	—	3.1	0.006	0.93	0.0	0.06	25.71	0.01	2.169	14.42	2.14	2.8	97.2	0.0	-6.14	0.60	0.74	3.05	3.1	0.005	0.68	0.0	0.04	28.44	0.00	2.279	9.45	1.25	1.7	98.3	0.0	1.37	1.31	0.62	0.81	2.44	9010	656	10	186	0	0	0	logfile
✔	6PVM	20493	2023-11-18	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	4.3	0.003	0.88	0.0	0.04	13.70	0.00	2.121	13.51	0.00	13.6	86.1	0.3	-2.67	1.03	0.49	0.74	—	21006	2576	6	0	2	0	0	logfile
✔	6TQE	10549	2023-11-15	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.69	0.00	2.010	4.66	0.00	5.1	94.9	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	7FEQ	31560	2023-11-17	2021-07-21	3.2	3.55	—	3.6	0.010	1.20	0.0	0.07	14.49	0.01	2.172	1.94	0.19	12.9	86.6	0.6	-6.13	0.47	0.75	3.40	3.6	0.004	0.71	0.0	0.05	16.44	0.00	2.187	3.94	0.15	11.0	88.8	0.2	-3.56	1.02	0.68	0.88	2.64	19236	2520	14	0	0	0	0	logfile
✘	8AZT	15771	2023-11-13	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✔	6N25	9323	2023-11-16	2018-11-12	2.7	3.35	—	3.2	0.008	0.85	0.0	0.05	9.28	0.01	2.307	2.16	0.00	2.1	97.9	0.0	-6.12	0.77	0.88	4.62	3.2	0.002	0.53	0.0	0.04	14.60	0.00	2.193	5.51	1.70	2.0	98.0	0.0	1.13	3.82	0.67	0.84	2.93	13940	1690	10	0	5	0	0	logfile
✔	6WR4	21876	2023-11-15	2020-04-29	2.9	3.02	—	3.0	0.012	1.40	3.0	0.07	14.49	0.01	2.272	4.03	5.53	5.2	94.4	0.4	-6.12	0.65	0.71	3.52	3.0	0.003	0.72	0.0	0.04	15.92	0.00	2.131	8.10	1.28	5.3	94.7	0.0	-0.88	1.22	0.64	0.77	2.97	11934	1410	6	0	6	0	0	logfile
✔	6E1K	8956	2023-11-16	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.76	1.0	0.08	13.49	0.01	2.047	10.32	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.003	0.70	0.0	0.04	14.36	0.00	2.082	12.28	0.58	5.4	94.6	0.0	-1.90	0.76	0.56	0.64	1.59	11641	1450	10	0	21	2	0	logfile
✔	6N26	9324	2023-11-15	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.55	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.004	0.68	0.0	0.04	15.84	0.00	2.213	7.34	2.49	1.3	98.7	0.0	0.61	0.73	0.73	0.85	2.78	13190	1595	5	0	0	0	0	logfile
✔	7D43	30568	2023-11-20	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.49	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	7YNL	33965	2023-11-13	2022-07-31	2.6	2.16	2.41	3.2	0.009	2.40	0.0	0.06	16.15	0.05	2.128	26.40	0.00	8.9	91.1	0.0	-6.11	0.27	0.35	2.03	3.4	0.004	0.96	0.0	0.05	18.12	0.00	2.218	11.58	8.44	9.8	90.2	0.0	-4.15	3.90	0.39	0.64	2.49	4080	464	16	0	16	0	0	logfile
✔	6HDD	0204	2023-11-19	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	5YFP	6827	2023-11-21	2017-09-21	4.4	8.20	—	6.7	0.006	1.35	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.005	1.05	0.0	0.05	11.10	0.00	2.021	30.50	0.10	19.1	80.6	0.3	-2.79	3.94	0.90	0.74	—	33096	5982	8	0	0	0	0	logfile
✔	5Lii	4053	2023-11-13	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	6PWF	20507	2023-11-16	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.91	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.003	0.66	0.0	0.04	27.01	0.00	2.070	11.68	0.00	5.7	94.3	0.0	-2.28	1.15	0.64	0.75	—	15197	1208	11	292	0	0	0	logfile
✔	6MUo	9250	2023-11-16	2018-10-23	3.6	4.56	—	4.5	0.008	0.95	0.0	0.05	26.19	0.01	2.077	6.89	0.48	7.8	92.2	0.0	-6.10	0.64	0.68	1.87	4.5	0.003	0.68	0.0	0.04	27.56	0.00	2.101	11.27	0.60	6.1	93.9	0.0	-1.37	0.83	0.68	0.74	0.85	14015	1006	13	294	0	0	0	logfile

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