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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VX5 | 21430 | 2023-11-15 | 2020-02-21 | 3.03 | 3.58 | — | 3.5 | 0.006 | 0.80 | 0.0 | 0.05 | 14.27 | 0.00 | 2.348 | 4.97 | 0.00 | 3.3 | 96.7 | 0.0 | -6.15 | 0.72 | 0.84 | 2.92 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.41 | 0.00 | 2.259 | 9.26 | 0.50 | 1.6 | 98.4 | 0.0 | -0.38 | 1.27 | 0.67 | 0.80 | 2.34 | 13056 | 1575 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2023-11-19 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 17.43 | 0.01 | 1.906 | 18.52 | 0.60 | 9.2 | 90.4 | 0.5 | -1.87 | 1.81 | 0.37 | 0.70 | 0.35 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 7K4D | 22665 | 2023-11-17 | 2020-09-15 | 3.66 | 4.18 | — | 4.3 | 0.010 | 1.22 | 0.0 | 0.06 | 12.05 | 0.01 | 2.205 | 3.98 | 0.38 | 9.1 | 90.9 | 0.0 | -6.15 | 0.51 | 0.74 | 2.06 | 4.3 | 0.003 | 0.75 | 0.0 | 0.04 | 16.29 | 0.00 | 2.129 | 9.75 | 0.56 | 6.6 | 93.4 | 0.0 | -1.56 | 0.86 | 0.54 | 0.76 | 1.33 | 19801 | 2448 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7DGZ | 30676 | 2023-11-14 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.43 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 14.39 | 0.01 | 2.084 | 11.40 | 0.37 | 14.7 | 85.1 | 0.3 | -3.35 | 1.61 | 0.82 | 0.73 | 0.56 | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✔ | 6M4G | 30077 | 2023-11-14 | 2020-03-06 | 2.8 | 3.16 | — | 3.1 | 0.006 | 0.93 | 0.0 | 0.06 | 25.71 | 0.01 | 2.169 | 14.42 | 2.14 | 2.8 | 97.2 | 0.0 | -6.14 | 0.60 | 0.74 | 3.05 | 3.1 | 0.005 | 0.68 | 0.0 | 0.04 | 28.44 | 0.00 | 2.279 | 9.45 | 1.25 | 1.7 | 98.3 | 0.0 | 1.37 | 1.31 | 0.62 | 0.81 | 2.44 | 9010 | 656 | 10 | 186 | 0 | 0 | 0 | logfile |
✔ | 6PVM | 20493 | 2023-11-18 | 2019-07-21 | 4.5 | 4.24 | — | 4.3 | 0.006 | 1.18 | 0.0 | 0.06 | 12.60 | 0.01 | 2.154 | 6.75 | 0.87 | 15.6 | 84.1 | 0.3 | -6.13 | 0.49 | 0.74 | — | 4.3 | 0.003 | 0.88 | 0.0 | 0.04 | 13.70 | 0.00 | 2.121 | 13.51 | 0.00 | 13.6 | 86.1 | 0.3 | -2.67 | 1.03 | 0.49 | 0.74 | — | 21006 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TQE | 10549 | 2023-11-15 | 2019-12-16 | 4.3 | 4.14 | — | 4.2 | 0.007 | 1.04 | 0.0 | 0.06 | 14.59 | 0.01 | 2.077 | 2.78 | 0.76 | 8.6 | 91.4 | 0.0 | -6.13 | 0.76 | 0.89 | — | 4.2 | 0.002 | 0.61 | 0.0 | 0.04 | 13.69 | 0.00 | 2.010 | 4.66 | 0.00 | 5.1 | 94.9 | 0.0 | -2.69 | 1.28 | 0.75 | 0.88 | — | 10076 | 1268 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7FEQ | 31560 | 2023-11-17 | 2021-07-21 | 3.2 | 3.55 | — | 3.6 | 0.010 | 1.20 | 0.0 | 0.07 | 14.49 | 0.01 | 2.172 | 1.94 | 0.19 | 12.9 | 86.6 | 0.6 | -6.13 | 0.47 | 0.75 | 3.40 | 3.6 | 0.004 | 0.71 | 0.0 | 0.05 | 16.44 | 0.00 | 2.187 | 3.94 | 0.15 | 11.0 | 88.8 | 0.2 | -3.56 | 1.02 | 0.68 | 0.88 | 2.64 | 19236 | 2520 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-11-13 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N25 | 9323 | 2023-11-16 | 2018-11-12 | 2.7 | 3.35 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 9.28 | 0.01 | 2.307 | 2.16 | 0.00 | 2.1 | 97.9 | 0.0 | -6.12 | 0.77 | 0.88 | 4.62 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.60 | 0.00 | 2.193 | 5.51 | 1.70 | 2.0 | 98.0 | 0.0 | 1.13 | 3.82 | 0.67 | 0.84 | 2.93 | 13940 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6WR4 | 21876 | 2023-11-15 | 2020-04-29 | 2.9 | 3.02 | — | 3.0 | 0.012 | 1.40 | 3.0 | 0.07 | 14.49 | 0.01 | 2.272 | 4.03 | 5.53 | 5.2 | 94.4 | 0.4 | -6.12 | 0.65 | 0.71 | 3.52 | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 15.92 | 0.00 | 2.131 | 8.10 | 1.28 | 5.3 | 94.7 | 0.0 | -0.88 | 1.22 | 0.64 | 0.77 | 2.97 | 11934 | 1410 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6E1K | 8956 | 2023-11-16 | 2018-07-10 | 3.3 | 3.68 | 3.47 | 3.7 | 0.019 | 1.76 | 1.0 | 0.08 | 13.49 | 0.01 | 2.047 | 10.32 | 1.50 | 11.4 | 88.3 | 0.3 | -6.12 | 0.53 | 0.67 | 3.36 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 14.36 | 0.00 | 2.082 | 12.28 | 0.58 | 5.4 | 94.6 | 0.0 | -1.90 | 0.76 | 0.56 | 0.64 | 1.59 | 11641 | 1450 | 10 | 0 | 21 | 2 | 0 | logfile |
✔ | 6N26 | 9324 | 2023-11-15 | 2018-11-12 | 3.0 | 3.29 | — | 3.2 | 0.008 | 0.83 | 0.0 | 0.05 | 9.20 | 0.01 | 2.277 | 2.55 | 0.00 | 3.2 | 96.8 | 0.0 | -6.12 | 0.72 | 0.83 | 4.16 | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 15.84 | 0.00 | 2.213 | 7.34 | 2.49 | 1.3 | 98.7 | 0.0 | 0.61 | 0.73 | 0.73 | 0.85 | 2.78 | 13190 | 1595 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D43 | 30568 | 2023-11-20 | 2020-09-22 | 4.3 | 4.40 | — | 4.3 | 0.006 | 0.99 | 0.0 | 0.05 | 14.62 | 0.01 | 2.018 | 28.49 | 0.31 | 18.3 | 81.6 | 0.1 | -6.11 | 0.83 | 0.79 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.05 | 13.78 | 0.00 | 2.083 | 20.44 | 0.00 | 12.6 | 87.3 | 0.0 | -2.75 | 1.57 | 0.83 | 0.78 | — | 31009 | 4347 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNL | 33965 | 2023-11-13 | 2022-07-31 | 2.6 | 2.16 | 2.41 | 3.2 | 0.009 | 2.40 | 0.0 | 0.06 | 16.15 | 0.05 | 2.128 | 26.40 | 0.00 | 8.9 | 91.1 | 0.0 | -6.11 | 0.27 | 0.35 | 2.03 | 3.4 | 0.004 | 0.96 | 0.0 | 0.05 | 18.12 | 0.00 | 2.218 | 11.58 | 8.44 | 9.8 | 90.2 | 0.0 | -4.15 | 3.90 | 0.39 | 0.64 | 2.49 | 4080 | 464 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-11-19 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.005 | 1.07 | 0.0 | 0.05 | 13.67 | 0.01 | 1.438 | 29.15 | 0.00 | 16.5 | 83.1 | 0.4 | -3.27 | 5.54 | 0.87 | 0.54 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2023-11-21 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.35 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.005 | 1.05 | 0.0 | 0.05 | 11.10 | 0.00 | 2.021 | 30.50 | 0.10 | 19.1 | 80.6 | 0.3 | -2.79 | 3.94 | 0.90 | 0.74 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-11-13 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWF | 20507 | 2023-11-16 | 2019-07-22 | 4.07 | 4.13 | — | 4.1 | 0.009 | 1.01 | 0.0 | 0.06 | 26.91 | 0.01 | 2.066 | 6.15 | 0.11 | 9.8 | 90.2 | 0.0 | -6.10 | 0.64 | 0.76 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 27.01 | 0.00 | 2.070 | 11.68 | 0.00 | 5.7 | 94.3 | 0.0 | -2.28 | 1.15 | 0.64 | 0.75 | — | 15197 | 1208 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 6MUo | 9250 | 2023-11-16 | 2018-10-23 | 3.6 | 4.56 | — | 4.5 | 0.008 | 0.95 | 0.0 | 0.05 | 26.19 | 0.01 | 2.077 | 6.89 | 0.48 | 7.8 | 92.2 | 0.0 | -6.10 | 0.64 | 0.68 | 1.87 | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 27.56 | 0.00 | 2.101 | 11.27 | 0.60 | 6.1 | 93.9 | 0.0 | -1.37 | 0.83 | 0.68 | 0.74 | 0.85 | 14015 | 1006 | 13 | 294 | 0 | 0 | 0 | logfile |