Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BZ2	30249	2023-04-20	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	14.75	0.00	2.101	12.35	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.003	0.64	0.0	0.04	16.53	0.00	2.132	10.06	0.54	5.2	94.8	0.0	-2.37	1.58	0.72	0.78	1.00	7393	978	5	0	1	0	0	logfile
✔	7DSH	30833	2023-04-22	2020-12-31	3.67	3.52	—	3.6	0.007	1.08	1.0	0.06	11.35	0.01	2.099	6.74	0.46	9.5	90.4	0.1	-6.04	0.67	0.76	3.10	3.6	0.004	0.71	0.0	0.05	14.22	0.00	2.164	13.77	0.31	9.0	90.9	0.1	-2.97	0.59	0.68	0.77	2.17	12071	1500	4	0	5	0	0	logfile
✔	6MP6	9187	2023-04-21	2018-10-05	3.54	4.04	3.81	4.0	0.006	1.10	0.0	0.06	10.31	0.01	2.439	3.39	0.00	7.9	92.1	0.0	-6.02	0.70	0.81	2.60	4.0	0.003	0.90	0.0	0.04	15.79	0.00	2.131	10.55	0.38	5.9	94.1	0.0	0.49	1.48	0.68	0.82	1.31	9939	1338	6	0	3	0	0	logfile
✔	6M4H	30078	2023-04-21	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.18	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.005	0.77	0.0	0.04	29.89	0.00	2.112	19.90	0.36	3.0	97.0	0.0	1.19	1.75	0.87	0.84	1.09	9420	656	10	206	0	0	0	logfile
✔	6QM6	4589	2023-04-21	2019-02-01	3.7	3.81	3.67	3.8	0.004	0.84	0.0	0.05	14.34	0.01	2.338	4.35	0.00	3.3	96.7	0.0	-6.02	0.69	0.85	2.46	3.8	0.003	0.66	0.0	0.04	16.28	0.00	2.140	8.14	0.35	3.4	96.6	0.0	1.10	0.62	0.69	0.85	1.90	10852	1344	2	0	0	0	0	logfile
✔	5XLo	6729	2023-04-23	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.24	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✔	7BSV	30168	2023-04-21	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	17.26	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.005	0.93	0.0	0.05	18.07	0.00	0.854	9.10	3.44	6.1	93.8	0.1	-1.37	0.99	0.62	0.88	3.82	9339	1139	6	0	8	4	0	logfile
✘	7SL9	25195	2023-04-20	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4712	619	3	0	1	0	0	logfile
✔	6o1N	0593	2023-04-25	2019-02-21	2.9	3.21	—	3.8	0.011	1.37	12.0	0.07	11.02	0.01	1.856	9.13	1.51	6.4	93.1	0.5	-6.01	0.60	0.73	2.17	3.7	0.003	0.77	0.0	0.04	15.75	0.00	2.178	7.84	1.46	6.2	93.8	0.0	-1.53	0.99	0.58	0.73	1.67	19608	2448	4	0	0	0	0	logfile
✔	5XJY	6724	2023-04-22	2017-05-04	4.1	4.17	—	4.1	0.010	1.31	0.0	0.07	12.02	0.01	2.200	9.25	1.27	14.1	85.8	0.2	-6.01	0.64	0.76	—	4.1	0.004	0.81	0.0	0.05	12.40	0.01	2.162	11.65	0.00	10.2	89.8	0.0	-1.50	3.03	0.63	0.74	—	12785	1901	4	0	12	0	0	logfile
✔	6PPR	20446	2023-04-22	2019-07-08	3.5	3.62	—	3.6	0.009	1.16	0.0	0.06	14.83	0.01	2.032	11.04	1.28	10.1	89.8	0.1	-6.00	0.77	0.84	3.29	3.6	0.004	0.71	0.0	0.04	17.04	0.00	2.032	5.71	0.39	5.7	94.3	0.0	-1.81	1.08	0.78	0.85	2.39	11995	1594	4	32	2	0	0	logfile
✔	6RDF	4816	2023-04-25	2019-04-12	3.2	3.30	3.25	3.2	0.008	0.89	0.0	0.05	13.40	0.01	2.212	4.09	0.15	4.7	95.2	0.2	-6.00	0.50	0.84	3.59	3.3	0.004	0.66	0.0	0.04	15.40	0.00	2.061	8.14	0.34	4.1	95.8	0.1	0.89	1.18	0.51	0.87	2.57	19855	2597	18	0	1	29	0	logfile
✔	7D09	30527	2023-04-24	2020-09-09	3.6	3.73	—	3.7	0.007	1.11	0.0	0.06	16.97	0.01	2.181	15.50	8.59	9.3	89.5	1.2	-6.00	0.72	0.81	2.38	3.7	0.003	0.70	0.0	0.04	16.25	0.00	2.131	7.24	0.16	6.1	93.9	0.0	-2.10	1.30	0.72	0.82	1.90	17802	2374	14	0	2	0	0	logfile
✔	6VXi	21438	2023-04-21	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	16.00	0.00	2.281	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.005	0.80	0.0	0.05	17.09	0.00	2.133	13.85	0.83	9.9	90.0	0.1	-2.53	0.59	0.61	0.80	2.64	8898	1132	4	0	3	0	0	logfile
✘	6PPL	20442	2023-04-20	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✔	7A4A	11630	2023-04-25	2020-08-19	3.76	3.95	3.75	4.0	0.007	0.71	0.0	0.04	11.65	0.01	2.109	13.28	2.96	12.8	87.2	0.0	-6.00	0.69	0.78	2.12	4.0	0.003	0.74	0.0	0.05	14.47	0.00	2.177	13.38	0.51	10.3	89.7	0.0	-3.32	0.87	0.67	0.77	2.19	19785	1317	6	0	3	0	9618	logfile
✔	7CMi	30407	2023-04-20	2020-07-27	2.9	3.36	—	3.3	0.006	1.01	0.0	0.05	15.07	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.004	0.81	0.0	0.05	16.52	0.00	2.092	8.50	2.49	7.4	92.5	0.1	-0.12	1.14	0.69	0.86	1.77	7353	928	7	0	10	6	0	logfile
✔	7EJ2	31149	2023-04-25	2021-04-01	3.3	3.53	—	3.4	0.009	0.94	0.0	0.06	15.52	0.01	2.290	7.49	0.19	4.8	95.1	0.1	-5.99	0.81	0.85	3.23	3.4	0.003	0.67	0.0	0.04	15.70	0.00	2.192	8.75	0.24	2.2	97.8	0.0	-1.52	0.57	0.84	0.87	2.77	20968	2728	12	0	4	0	0	logfile
✔	6HYP	0309	2023-04-22	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.88	0.00	1.995	5.56	0.00	13.4	86.3	0.2	-1.62	0.63	0.77	0.75	—	12392	2082	1	0	192	0	0	logfile
✔	7CMH	30406	2023-04-20	2020-07-27	3.4	3.57	—	3.6	0.006	1.06	0.0	0.06	15.20	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.81	2.75	3.5	0.003	0.70	0.0	0.04	16.20	0.00	2.163	8.01	1.18	6.7	93.2	0.1	-0.85	0.60	0.64	0.82	1.78	7368	928	7	0	10	0	0	logfile

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