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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BZ2 | 30249 | 2023-04-20 | 2020-04-26 | 3.82 | 3.99 | — | 3.9 | 0.004 | 0.68 | 0.0 | 0.05 | 14.75 | 0.00 | 2.101 | 12.35 | 0.00 | 10.2 | 89.8 | 0.0 | -6.04 | 0.73 | 0.79 | 2.10 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 16.53 | 0.00 | 2.132 | 10.06 | 0.54 | 5.2 | 94.8 | 0.0 | -2.37 | 1.58 | 0.72 | 0.78 | 1.00 | 7393 | 978 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DSH | 30833 | 2023-04-22 | 2020-12-31 | 3.67 | 3.52 | — | 3.6 | 0.007 | 1.08 | 1.0 | 0.06 | 11.35 | 0.01 | 2.099 | 6.74 | 0.46 | 9.5 | 90.4 | 0.1 | -6.04 | 0.67 | 0.76 | 3.10 | 3.6 | 0.004 | 0.71 | 0.0 | 0.05 | 14.22 | 0.00 | 2.164 | 13.77 | 0.31 | 9.0 | 90.9 | 0.1 | -2.97 | 0.59 | 0.68 | 0.77 | 2.17 | 12071 | 1500 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6MP6 | 9187 | 2023-04-21 | 2018-10-05 | 3.54 | 4.04 | 3.81 | 4.0 | 0.006 | 1.10 | 0.0 | 0.06 | 10.31 | 0.01 | 2.439 | 3.39 | 0.00 | 7.9 | 92.1 | 0.0 | -6.02 | 0.70 | 0.81 | 2.60 | 4.0 | 0.003 | 0.90 | 0.0 | 0.04 | 15.79 | 0.00 | 2.131 | 10.55 | 0.38 | 5.9 | 94.1 | 0.0 | 0.49 | 1.48 | 0.68 | 0.82 | 1.31 | 9939 | 1338 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6M4H | 30078 | 2023-04-21 | 2020-03-07 | 3.9 | 4.39 | — | 3.9 | 0.008 | 0.89 | 0.0 | 0.05 | 29.18 | 0.01 | 1.729 | 27.61 | 2.85 | 3.1 | 96.7 | 0.2 | -6.02 | 0.82 | 0.76 | 1.36 | 4.0 | 0.005 | 0.77 | 0.0 | 0.04 | 29.89 | 0.00 | 2.112 | 19.90 | 0.36 | 3.0 | 97.0 | 0.0 | 1.19 | 1.75 | 0.87 | 0.84 | 1.09 | 9420 | 656 | 10 | 206 | 0 | 0 | 0 | logfile |
✔ | 6QM6 | 4589 | 2023-04-21 | 2019-02-01 | 3.7 | 3.81 | 3.67 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 14.34 | 0.01 | 2.338 | 4.35 | 0.00 | 3.3 | 96.7 | 0.0 | -6.02 | 0.69 | 0.85 | 2.46 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.28 | 0.00 | 2.140 | 8.14 | 0.35 | 3.4 | 96.6 | 0.0 | 1.10 | 0.62 | 0.69 | 0.85 | 1.90 | 10852 | 1344 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-04-23 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.89 | 0.0 | 0.04 | 17.39 | 0.01 | 2.066 | 20.24 | 0.88 | 15.6 | 84.1 | 0.3 | -4.03 | 1.62 | 0.62 | 0.67 | 0.65 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 7BSV | 30168 | 2023-04-21 | 2020-03-31 | 3.0 | 3.16 | — | 3.1 | 0.005 | 1.15 | 0.0 | 0.05 | 17.26 | 0.01 | 1.809 | 30.62 | 6.19 | 7.6 | 92.2 | 0.2 | -6.02 | 0.61 | 0.86 | 4.20 | 3.1 | 0.005 | 0.93 | 0.0 | 0.05 | 18.07 | 0.00 | 0.854 | 9.10 | 3.44 | 6.1 | 93.8 | 0.1 | -1.37 | 0.99 | 0.62 | 0.88 | 3.82 | 9339 | 1139 | 6 | 0 | 8 | 4 | 0 | logfile |
✘ | 7SL9 | 25195 | 2023-04-20 | 2021-10-23 | 3.5 | 3.79 | — | 3.7 | 0.005 | 0.95 | 0.0 | 0.06 | 13.95 | 0.01 | 2.259 | 4.68 | 0.40 | 5.9 | 94.1 | 0.0 | -6.01 | 0.64 | 0.82 | 2.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4712 | 619 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6o1N | 0593 | 2023-04-25 | 2019-02-21 | 2.9 | 3.21 | — | 3.8 | 0.011 | 1.37 | 12.0 | 0.07 | 11.02 | 0.01 | 1.856 | 9.13 | 1.51 | 6.4 | 93.1 | 0.5 | -6.01 | 0.60 | 0.73 | 2.17 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.75 | 0.00 | 2.178 | 7.84 | 1.46 | 6.2 | 93.8 | 0.0 | -1.53 | 0.99 | 0.58 | 0.73 | 1.67 | 19608 | 2448 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XJY | 6724 | 2023-04-22 | 2017-05-04 | 4.1 | 4.17 | — | 4.1 | 0.010 | 1.31 | 0.0 | 0.07 | 12.02 | 0.01 | 2.200 | 9.25 | 1.27 | 14.1 | 85.8 | 0.2 | -6.01 | 0.64 | 0.76 | — | 4.1 | 0.004 | 0.81 | 0.0 | 0.05 | 12.40 | 0.01 | 2.162 | 11.65 | 0.00 | 10.2 | 89.8 | 0.0 | -1.50 | 3.03 | 0.63 | 0.74 | — | 12785 | 1901 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PPR | 20446 | 2023-04-22 | 2019-07-08 | 3.5 | 3.62 | — | 3.6 | 0.009 | 1.16 | 0.0 | 0.06 | 14.83 | 0.01 | 2.032 | 11.04 | 1.28 | 10.1 | 89.8 | 0.1 | -6.00 | 0.77 | 0.84 | 3.29 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 17.04 | 0.00 | 2.032 | 5.71 | 0.39 | 5.7 | 94.3 | 0.0 | -1.81 | 1.08 | 0.78 | 0.85 | 2.39 | 11995 | 1594 | 4 | 32 | 2 | 0 | 0 | logfile |
✔ | 6RDF | 4816 | 2023-04-25 | 2019-04-12 | 3.2 | 3.30 | 3.25 | 3.2 | 0.008 | 0.89 | 0.0 | 0.05 | 13.40 | 0.01 | 2.212 | 4.09 | 0.15 | 4.7 | 95.2 | 0.2 | -6.00 | 0.50 | 0.84 | 3.59 | 3.3 | 0.004 | 0.66 | 0.0 | 0.04 | 15.40 | 0.00 | 2.061 | 8.14 | 0.34 | 4.1 | 95.8 | 0.1 | 0.89 | 1.18 | 0.51 | 0.87 | 2.57 | 19855 | 2597 | 18 | 0 | 1 | 29 | 0 | logfile |
✔ | 7D09 | 30527 | 2023-04-24 | 2020-09-09 | 3.6 | 3.73 | — | 3.7 | 0.007 | 1.11 | 0.0 | 0.06 | 16.97 | 0.01 | 2.181 | 15.50 | 8.59 | 9.3 | 89.5 | 1.2 | -6.00 | 0.72 | 0.81 | 2.38 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 16.25 | 0.00 | 2.131 | 7.24 | 0.16 | 6.1 | 93.9 | 0.0 | -2.10 | 1.30 | 0.72 | 0.82 | 1.90 | 17802 | 2374 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 6VXi | 21438 | 2023-04-21 | 2020-02-21 | 3.7 | 3.67 | — | 3.7 | 0.008 | 1.00 | 0.0 | 0.06 | 16.00 | 0.00 | 2.281 | 6.73 | 2.07 | 9.5 | 90.3 | 0.2 | -6.00 | 0.61 | 0.79 | 2.72 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 17.09 | 0.00 | 2.133 | 13.85 | 0.83 | 9.9 | 90.0 | 0.1 | -2.53 | 0.59 | 0.61 | 0.80 | 2.64 | 8898 | 1132 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 6PPL | 20442 | 2023-04-20 | 2019-07-08 | 3.02 | 3.14 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.25 | 14.17 | 0.01 | 1.917 | 3.20 | 0.23 | 2.7 | 97.3 | 0.0 | -6.00 | 0.74 | 0.86 | 4.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8155 | 980 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7A4A | 11630 | 2023-04-25 | 2020-08-19 | 3.76 | 3.95 | 3.75 | 4.0 | 0.007 | 0.71 | 0.0 | 0.04 | 11.65 | 0.01 | 2.109 | 13.28 | 2.96 | 12.8 | 87.2 | 0.0 | -6.00 | 0.69 | 0.78 | 2.12 | 4.0 | 0.003 | 0.74 | 0.0 | 0.05 | 14.47 | 0.00 | 2.177 | 13.38 | 0.51 | 10.3 | 89.7 | 0.0 | -3.32 | 0.87 | 0.67 | 0.77 | 2.19 | 19785 | 1317 | 6 | 0 | 3 | 0 | 9618 | logfile |
✔ | 7CMi | 30407 | 2023-04-20 | 2020-07-27 | 2.9 | 3.36 | — | 3.3 | 0.006 | 1.01 | 0.0 | 0.05 | 15.07 | 0.01 | 1.904 | 7.49 | 1.44 | 7.2 | 91.4 | 1.4 | -5.99 | 0.62 | 0.67 | 0.20 | 3.3 | 0.004 | 0.81 | 0.0 | 0.05 | 16.52 | 0.00 | 2.092 | 8.50 | 2.49 | 7.4 | 92.5 | 0.1 | -0.12 | 1.14 | 0.69 | 0.86 | 1.77 | 7353 | 928 | 7 | 0 | 10 | 6 | 0 | logfile |
✔ | 7EJ2 | 31149 | 2023-04-25 | 2021-04-01 | 3.3 | 3.53 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 15.52 | 0.01 | 2.290 | 7.49 | 0.19 | 4.8 | 95.1 | 0.1 | -5.99 | 0.81 | 0.85 | 3.23 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.70 | 0.00 | 2.192 | 8.75 | 0.24 | 2.2 | 97.8 | 0.0 | -1.52 | 0.57 | 0.84 | 0.87 | 2.77 | 20968 | 2728 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6HYP | 0309 | 2023-04-22 | 2018-10-22 | 4.4 | 4.53 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.05 | 8.72 | 0.00 | 1.943 | 1.67 | 0.34 | 7.3 | 92.2 | 0.4 | -5.99 | 0.75 | 0.69 | — | 4.4 | 0.004 | 0.79 | 0.0 | 0.04 | 8.88 | 0.00 | 1.995 | 5.56 | 0.00 | 13.4 | 86.3 | 0.2 | -1.62 | 0.63 | 0.77 | 0.75 | — | 12392 | 2082 | 1 | 0 | 192 | 0 | 0 | logfile |
✔ | 7CMH | 30406 | 2023-04-20 | 2020-07-27 | 3.4 | 3.57 | — | 3.6 | 0.006 | 1.06 | 0.0 | 0.06 | 15.20 | 0.01 | 2.214 | 9.49 | 1.18 | 8.6 | 90.7 | 0.8 | -5.98 | 0.63 | 0.81 | 2.75 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 16.20 | 0.00 | 2.163 | 8.01 | 1.18 | 6.7 | 93.2 | 0.1 | -0.85 | 0.60 | 0.64 | 0.82 | 1.78 | 7368 | 928 | 7 | 0 | 10 | 0 | 0 | logfile |