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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6N9Y | 0383 | 2024-03-10 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 4.80 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 15.19 | 0.00 | 2.157 | 13.73 | 3.33 | 8.5 | 91.5 | 0.0 | -0.83 | 1.76 | 0.40 | 0.79 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2024-03-17 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.005 | 0.66 | 0.0 | 0.04 | 11.36 | 0.00 | 2.106 | 8.25 | 0.00 | 6.6 | 93.4 | 0.0 | -1.06 | 1.52 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NB3 | 0401 | 2024-03-21 | 2018-12-06 | 3.5 | 3.78 | — | 3.7 | 0.015 | 1.40 | 3.0 | 0.09 | 17.22 | 0.01 | 2.139 | 1.17 | 0.41 | 2.7 | 97.1 | 0.2 | 0.07 | 0.77 | 0.74 | 2.09 | 3.7 | 0.004 | 0.72 | 0.0 | 0.05 | 13.77 | 0.00 | 2.080 | 7.76 | 2.97 | 4.0 | 96.0 | 0.0 | -0.08 | 1.61 | 0.80 | 0.80 | 1.92 | 30960 | 3757 | 54 | 0 | 160 | 0 | 0 | logfile |
✔ | 6NB4 | 0402 | 2024-03-20 | 2018-12-06 | 3.6 | 3.72 | — | 3.7 | 0.016 | 1.34 | 4.0 | 0.09 | 13.88 | 0.01 | 1.986 | 1.24 | 0.45 | 2.6 | 97.1 | 0.2 | 0.04 | 0.77 | 0.74 | 2.29 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 13.56 | 0.00 | 2.121 | 7.03 | 2.17 | 3.8 | 96.2 | 0.0 | -0.08 | 1.59 | 0.81 | 0.80 | 1.96 | 26681 | 3315 | 46 | 0 | 113 | 0 | 0 | logfile |
✘ | 6NB6 | 0403 | 2024-03-20 | 2018-12-06 | 4.2 | 4.51 | — | 4.3 | 0.017 | 1.50 | 4.0 | 0.11 | 19.89 | 0.01 | 2.264 | 1.21 | 0.42 | 3.3 | 96.4 | 0.2 | 0.22 | 0.81 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25783 | 3599 | 48 | 0 | 149 | 0 | 0 | logfile |
✔ | 6NB7 | 0404 | 2024-03-19 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.016 | 1.50 | 1.0 | 0.10 | 19.26 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 10.54 | 0.00 | 2.140 | 7.19 | 0.00 | 4.9 | 95.0 | 0.0 | -0.42 | 0.90 | 0.83 | 0.78 | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✔ | 6NBF | 0410 | 2024-03-14 | 2018-12-07 | 3.0 | 3.52 | — | 3.5 | 0.005 | 0.90 | 0.0 | 0.06 | 9.17 | 0.01 | 2.307 | 3.07 | 0.10 | 3.0 | 97.0 | 0.0 | -1.40 | 0.64 | 0.79 | 3.11 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 13.81 | 0.00 | 2.090 | 6.25 | 2.75 | 2.0 | 98.0 | 0.0 | 0.61 | 1.19 | 0.53 | 0.75 | 2.58 | 9424 | 1148 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NBH | 0411 | 2024-03-14 | 2018-12-07 | 3.5 | 4.06 | — | 4.0 | 0.005 | 0.86 | 0.0 | 0.05 | 8.43 | 0.00 | 2.357 | 1.79 | 0.20 | 2.6 | 97.4 | 0.0 | -1.51 | 0.62 | 0.76 | 1.73 | 4.0 | 0.005 | 0.96 | 0.0 | 0.04 | 15.09 | 0.00 | 1.835 | 14.34 | 4.15 | 2.9 | 97.1 | 0.0 | 0.56 | 1.38 | 0.59 | 0.76 | 1.22 | 9502 | 1159 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NBi | 0412 | 2024-03-14 | 2018-12-07 | 4.0 | 4.43 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 8.93 | 0.00 | 2.337 | 2.35 | 0.31 | 2.8 | 97.2 | 0.0 | -1.70 | 0.62 | 0.74 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.04 | 15.62 | 0.00 | 2.141 | 17.60 | 3.29 | 2.2 | 97.8 | 0.0 | 0.36 | 2.52 | 0.64 | 0.78 | — | 9195 | 1141 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 6NC3 | 0434 | 2024-03-23 | 2018-12-10 | 4.5 | 5.02 | 4.53 | 4.5 | 0.020 | 1.83 | 0.0 | 0.11 | 16.39 | 0.01 | 2.381 | 0.92 | 0.15 | 3.1 | 96.5 | 0.4 | 0.08 | 0.77 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38904 | 4686 | 72 | 0 | 162 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2024-03-16 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 18.53 | 0.00 | 2.095 | 7.36 | 2.94 | 5.8 | 94.2 | 0.0 | -0.64 | 2.47 | 0.75 | 0.86 | 1.37 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND0 | 0439 | 2024-03-19 | 2018-12-13 | 3.5 | 3.65 | — | 3.6 | 0.008 | 0.94 | 0.0 | 0.06 | 10.80 | 0.01 | 2.178 | 5.06 | 0.43 | 7.8 | 92.0 | 0.2 | -4.62 | 0.60 | 0.75 | 3.00 | 3.6 | 0.003 | 0.65 | 1.0 | 0.04 | 14.57 | 0.00 | 2.084 | 9.82 | 2.90 | 6.4 | 93.5 | 0.1 | -1.37 | 0.79 | 0.67 | 0.80 | 2.40 | 22964 | 2908 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND1 | 0440 | 2024-03-14 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.81 | 0.00 | 2.028 | 7.52 | 0.00 | 3.2 | 96.8 | 0.0 | 0.54 | 0.65 | 0.59 | 0.80 | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2024-03-12 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 19.33 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.13 | 0.0 | 0.05 | 19.70 | 0.01 | 1.949 | 22.46 | 0.00 | 20.7 | 79.2 | 0.0 | -4.10 | 1.19 | 0.84 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2024-03-15 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.25 | 0.00 | 0.891 | 12.65 | 1.55 | 5.8 | 94.2 | 0.0 | -0.19 | 1.31 | 0.79 | 0.81 | 1.00 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 6NMA | 0445 | 2024-03-15 | 2019-01-10 | 3.38 | 3.71 | — | 3.7 | 0.009 | 0.78 | 0.0 | 0.05 | 15.89 | 0.00 | 1.973 | 10.70 | 8.09 | 11.0 | 89.0 | 0.1 | -4.94 | 0.65 | 0.78 | 2.70 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 17.06 | 0.00 | 2.213 | 7.80 | 3.97 | 7.1 | 92.9 | 0.0 | -1.46 | 0.46 | 0.65 | 0.78 | 1.74 | 12404 | 1435 | 6 | 25 | 2 | 0 | 0 | logfile |
✔ | 6NMC | 0446 | 2024-03-15 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.98 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.05 | 15.25 | 0.00 | 1.865 | 20.95 | 0.07 | 8.2 | 91.8 | 0.0 | -0.92 | 1.83 | 0.89 | 0.84 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✔ | 6NMD | 0447 | 2024-03-15 | 2019-01-10 | 3.49 | 3.91 | — | 4.0 | 0.013 | 1.11 | 5.0 | 0.07 | 17.37 | 0.01 | 2.014 | 16.61 | 2.43 | 10.7 | 88.9 | 0.4 | -4.62 | 0.55 | 0.46 | 0.29 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 18.65 | 0.00 | 1.929 | 13.54 | 2.68 | 5.9 | 94.1 | 0.1 | -1.34 | 1.81 | 0.74 | 0.79 | 1.05 | 11779 | 1358 | 7 | 25 | 2 | 6 | 0 | logfile |
✔ | 6NMi | 0452 | 2024-03-19 | 2019-01-10 | 3.7 | 3.82 | 3.78 | 3.8 | 0.008 | 1.13 | 0.0 | 0.06 | 9.85 | 0.01 | 2.240 | 6.06 | 0.16 | 10.6 | 89.2 | 0.2 | -4.24 | 0.71 | 0.76 | 1.90 | 3.8 | 0.004 | 0.87 | 2.0 | 0.05 | 15.77 | 0.01 | 1.761 | 14.85 | 2.57 | 7.1 | 92.9 | 0.0 | -0.84 | 0.86 | 0.72 | 0.77 | 1.18 | 24379 | 2908 | 12 | 0 | 277 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2024-03-16 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 18.29 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.012 | 1.72 | 0.0 | 0.07 | 17.09 | 0.00 | 1.997 | 30.54 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |