Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NR2	0487	2023-07-12	2019-01-22	4.0	4.24	3.95	4.1	0.007	0.98	0.0	0.05	10.05	0.01	2.256	5.92	0.17	4.1	95.9	0.0	-2.86	0.68	0.81	—	4.1	0.003	0.62	0.0	0.04	14.45	0.00	2.257	7.03	0.43	4.8	95.2	0.0	1.57	1.30	0.68	0.82	—	25788	3256	8	0	188	0	0	logfile
✘	6NR3	0488	2023-07-12	2019-01-22	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25180	3232	8	0	196	0	0	logfile
✔	6NR4	0489	2023-07-11	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	11.99	0.00	2.161	7.21	0.00	4.2	95.8	0.0	2.17	0.79	0.60	0.78	—	23264	3036	4	0	180	0	0	logfile
✔	6NSJ	0498	2023-07-05	2019-01-24	2.7	3.69	2.67	3.6	0.008	1.12	0.0	0.06	13.77	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.003	0.59	0.0	0.04	14.04	0.00	2.234	5.27	1.09	4.0	96.0	0.0	2.26	0.53	0.58	0.75	2.91	9096	1092	12	0	18	0	0	logfile
✔	6NSK	0499	2023-07-05	2019-01-24	2.7	2.82	2.55	3.1	0.009	1.11	0.0	0.06	14.42	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.003	0.58	0.0	0.04	14.68	0.00	2.265	5.59	1.74	3.7	96.3	0.0	2.52	0.42	0.65	0.82	3.62	9096	1092	12	0	18	0	0	logfile
✘	6NT3	0500	2023-07-05	2019-01-28	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10934	1278	5	0	20	0	0	logfile
✘	6NT4	0501	2023-07-06	2019-01-28	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	5	0	20	0	0	logfile
✘	6NT5	0502	2023-07-03	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4586	584	2	0	0	0	0	logfile
✔	6NT6	0503	2023-07-03	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.002	0.72	0.0	0.04	15.61	0.00	2.295	7.27	0.00	2.7	97.3	0.0	1.43	1.19	0.69	0.80	—	4198	556	2	0	0	0	0	logfile
✔	6NT7	0504	2023-07-03	2019-01-28	4.0	4.27	—	4.1	0.008	0.90	0.0	0.05	14.16	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.004	0.66	0.0	0.04	15.70	0.00	2.190	9.30	0.39	3.2	96.8	0.0	1.15	1.19	0.75	0.85	—	4729	588	3	0	1	0	0	logfile
✔	6NT9	0506	2023-07-05	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.003	0.50	0.0	0.04	14.15	0.00	2.226	4.50	0.18	1.8	98.2	0.0	2.60	0.58	0.83	0.88	3.12	9906	1228	4	0	0	0	0	logfile
✔	6NTS	0510	2023-07-05	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	6NUD	0516	2023-07-10	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.82	0.0	0.04	16.71	0.00	2.146	15.03	0.24	10.1	89.9	0.0	-2.41	2.02	0.73	0.76	1.77	20831	2420	13	68	1	0	0	logfile
✔	6NUR	0520	2023-07-04	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.28	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.003	0.59	0.0	0.04	14.69	0.00	2.150	6.19	0.31	2.0	98.0	0.0	0.61	0.72	0.57	0.82	3.06	8647	1087	5	0	2	0	0	logfile
✔	6NUS	0521	2023-07-04	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.64	0.0	0.04	14.69	0.00	2.202	11.22	0.69	2.6	97.4	0.0	0.73	1.87	0.53	0.71	0.89	6632	827	3	0	2	0	0	logfile
✔	6NUW	0523	2023-07-08	2019-02-03	4.25	4.40	—	4.2	0.012	1.45	1.0	0.07	14.25	0.01	1.219	13.65	6.01	15.2	84.0	0.8	-4.70	0.79	0.78	—	4.2	0.004	0.88	0.0	0.05	13.33	0.01	2.180	16.87	0.15	12.0	87.8	0.1	-0.88	0.81	0.78	0.76	—	16292	2099	13	0	261	0	0	logfile
✔	6NYB	0541	2023-07-04	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	6.97	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.005	0.80	0.0	0.04	13.88	0.00	1.864	12.75	0.00	4.2	95.8	0.0	0.25	2.59	0.79	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	6NYF	0542	2023-07-16	2019-02-11	3.2	3.97	—	3.8	0.007	0.99	0.0	0.06	10.44	0.01	2.263	6.08	0.32	12.9	87.1	0.0	-5.20	0.82	0.80	3.21	3.8	0.002	0.63	0.0	0.05	12.46	0.00	2.191	10.93	0.30	8.7	91.3	0.0	-3.73	1.60	0.80	0.77	2.58	34332	4500	6	0	0	0	0	logfile
✔	6NYG	0543	2023-07-10	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.18	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.003	0.73	0.0	0.05	13.61	0.00	2.093	18.96	0.18	11.3	88.7	0.0	-3.94	1.29	0.83	0.68	0.96	68664	9000	12	0	0	0	0	logfile
✔	6NYJ	0544	2023-07-10	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile

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