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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WXU | 21963 | 2024-03-17 | 2020-05-12 | 2.7 | 3.26 | — | 3.2 | 0.011 | 0.89 | 0.0 | 0.05 | 14.66 | 0.01 | 2.193 | 4.00 | 1.85 | 4.8 | 95.2 | 0.0 | -3.08 | 0.74 | 0.85 | 3.80 | 3.2 | 0.004 | 0.66 | 0.0 | 0.04 | 15.41 | 0.00 | 2.255 | 4.45 | 2.23 | 5.1 | 94.9 | 0.0 | 0.01 | 0.42 | 0.71 | 0.85 | 3.39 | 18156 | 2214 | 10 | 0 | 40 | 0 | 0 | logfile |
✔ | 6VXo | 21446 | 2024-03-11 | 2020-02-22 | 3.5 | 3.81 | — | 3.8 | 0.012 | 1.40 | 0.0 | 0.05 | 24.97 | 0.00 | 2.125 | 14.64 | 21.57 | 12.2 | 87.4 | 0.4 | -3.90 | 0.63 | 0.83 | 0.88 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 19.26 | 0.00 | 2.113 | 8.21 | 7.97 | 10.2 | 89.8 | 0.0 | -0.09 | 0.66 | 0.61 | 0.81 | 0.53 | 8048 | 904 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7VBZ | 31886 | 2024-03-21 | 2021-09-01 | 2.4 | 2.48 | — | 2.5 | 0.009 | 0.93 | 6.0 | 0.06 | 16.93 | 0.01 | 1.907 | 11.30 | 2.07 | 3.7 | 96.0 | 0.3 | -0.05 | 0.74 | 0.89 | 4.87 | 2.4 | 0.004 | 0.61 | 0.0 | 0.04 | 17.17 | 0.00 | 2.102 | 5.69 | 1.91 | 3.1 | 96.8 | 0.1 | 0.28 | 0.90 | 0.75 | 0.91 | 5.24 | 29292 | 3543 | 45 | 0 | 19 | 730 | 0 | logfile |
✔ | 3J5R | 5777 | 2024-03-17 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 12.93 | 0.00 | 2.069 | 21.65 | 0.00 | 7.1 | 92.4 | 0.4 | -0.07 | 1.80 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6JND | 9848 | 2024-03-10 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 3.79 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | 3.9 | 0.004 | 0.63 | 0.0 | 0.05 | 16.06 | 0.00 | 2.227 | 7.27 | 2.93 | 5.0 | 95.0 | 0.0 | -1.01 | 1.23 | 0.48 | 0.87 | 2.16 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7CZL | 30511 | 2024-03-24 | 2020-09-09 | 3.78 | 4.08 | — | 3.9 | 0.012 | 1.23 | 2.0 | 0.06 | 21.66 | 0.02 | 1.261 | 28.26 | 1.63 | 8.5 | 91.4 | 0.1 | -4.41 | 0.73 | 0.77 | 2.90 | 3.9 | 0.003 | 0.81 | 0.0 | 0.04 | 17.17 | 0.00 | 1.864 | 18.00 | 3.94 | 4.3 | 95.6 | 0.1 | 0.00 | 1.51 | 0.73 | 0.81 | 1.51 | 40859 | 4304 | 55 | 0 | 146 | 0 | 0 | logfile |
✔ | 6RWB | 10037 | 2024-03-16 | 2019-06-04 | 3.25 | 3.23 | — | 3.2 | 0.006 | 0.99 | 0.0 | 0.05 | 10.24 | 0.01 | 2.253 | 4.65 | 0.36 | 9.9 | 90.1 | 0.0 | -4.08 | 0.81 | 0.80 | 2.59 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.41 | 0.00 | 2.188 | 9.55 | 2.20 | 8.5 | 91.5 | 0.0 | 0.15 | 1.29 | 0.83 | 0.84 | 2.05 | 75405 | 9365 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YQD | 34024 | 2024-03-15 | 2022-08-06 | 3.4 | 3.67 | 3.38 | 3.7 | 0.012 | 1.46 | 7.0 | 0.10 | 13.65 | 0.00 | 2.335 | 4.80 | 7.63 | 0.5 | 99.5 | 0.0 | 6.20 | 0.79 | 0.85 | 0.96 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.80 | 0.00 | 2.237 | 7.76 | 3.20 | 1.1 | 98.9 | 0.0 | 4.42 | 0.65 | 0.78 | 0.85 | 1.54 | 10290 | 1330 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P1J | 13162 | 2024-03-11 | 2021-07-01 | 3.04 | 4.02 | 2.96 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 8.89 | 0.00 | 2.305 | 5.96 | 2.29 | 3.5 | 96.5 | 0.0 | 2.14 | 0.65 | 0.71 | 0.64 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 14.67 | 0.00 | 2.222 | 16.54 | 4.15 | 6.2 | 93.8 | 0.0 | 0.93 | 1.40 | 0.66 | 0.72 | 0.68 | 6502 | 868 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QXi | 14200 | 2024-03-21 | 2022-01-26 | 3.4 | 3.81 | — | 3.7 | 0.006 | 0.96 | 10.0 | 0.06 | 15.02 | 0.00 | 2.078 | 17.65 | 11.21 | 7.4 | 91.9 | 0.8 | -3.87 | 0.82 | 0.77 | 1.09 | 3.7 | 0.006 | 0.91 | 1.0 | 0.05 | 17.28 | 0.00 | 1.764 | 13.72 | 4.41 | 9.5 | 90.5 | 0.1 | -1.68 | 1.44 | 0.84 | 0.84 | 1.42 | 28928 | 3683 | 8 | 72 | 0 | 0 | 0 | logfile |
✘ | 7TQV | 26073 | 2024-03-17 | 2022-01-27 | 3.43 | 3.72 | — | 3.7 | 0.002 | 0.38 | 0.0 | 0.04 | 10.87 | 0.00 | 2.162 | 5.00 | 0.82 | 3.8 | 96.2 | 0.0 | -0.34 | 0.68 | 0.69 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17792 | 2083 | 8 | 66 | 0 | 0 | 0 | logfile |
✔ | 6ZLU | 11274 | 2024-03-24 | 2020-07-01 | 4.2 | 3.89 | — | 3.8 | 0.008 | 0.99 | 0.0 | 0.06 | 16.84 | 0.01 | 1.417 | 18.36 | 0.09 | 4.6 | 94.9 | 0.4 | -2.05 | 0.64 | 0.48 | — | 3.8 | 0.004 | 0.78 | 1.0 | 0.05 | 13.67 | 0.00 | 2.074 | 14.83 | 0.00 | 4.5 | 95.4 | 0.1 | -0.81 | 2.87 | 0.77 | 0.71 | — | 21700 | 2718 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KPG | 0745 | 2024-03-11 | 2019-08-15 | 3.0 | 3.46 | — | 3.4 | 0.014 | 1.09 | 0.0 | 0.06 | 14.62 | 0.01 | 2.219 | 7.70 | 0.74 | 7.4 | 92.5 | 0.1 | -5.14 | 0.65 | 0.79 | 3.29 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 16.44 | 0.00 | 2.137 | 12.55 | 4.25 | 3.9 | 96.1 | 0.0 | -1.64 | 0.58 | 0.65 | 0.80 | 2.36 | 8805 | 1135 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VPC | 21308 | 2024-03-17 | 2020-02-03 | 3.2 | 3.51 | 3.17 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 18.51 | 0.00 | 2.121 | 5.85 | 1.58 | 2.2 | 97.8 | 0.0 | -1.99 | 0.83 | 0.79 | 1.63 | 3.2 | 0.002 | 0.59 | 0.0 | 0.04 | 19.28 | 0.00 | 2.032 | 7.40 | 1.72 | 2.5 | 97.5 | 0.0 | 0.67 | 1.23 | 0.85 | 0.83 | 1.98 | 16309 | 1633 | 9 | 154 | 5 | 0 | 0 | logfile |
✔ | 6iR9 | 9713 | 2024-03-25 | 2018-11-12 | 3.8 | 4.23 | — | 3.5 | 0.009 | 1.22 | 3.0 | 0.07 | 17.99 | 0.01 | 2.071 | 7.47 | 0.74 | 4.3 | 95.0 | 0.7 | -1.69 | 0.76 | 0.65 | 0.96 | 3.5 | 0.006 | 0.75 | 0.0 | 0.04 | 19.17 | 0.00 | 1.969 | 14.60 | 1.50 | 4.6 | 95.3 | 0.1 | 0.62 | 0.96 | 0.83 | 0.80 | 1.39 | 46231 | 5123 | 34 | 267 | 11 | 0 | 0 | logfile |
✔ | 7N00 | 24095 | 2024-03-10 | 2021-05-24 | 2.27 | 3.74 | 2.49 | 3.3 | 0.004 | 0.55 | 0.0 | 0.05 | 12.23 | 0.00 | 2.138 | 5.26 | 3.44 | 2.9 | 97.1 | 0.0 | -1.01 | 0.78 | 0.78 | 4.22 | 3.4 | 0.006 | 0.83 | 0.0 | 0.05 | 14.83 | 0.00 | 1.975 | 10.87 | 1.55 | 3.5 | 96.5 | 0.0 | -0.60 | 1.02 | 0.73 | 0.88 | 3.90 | 5817 | 806 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8PWH | 17993 | 2024-03-15 | 2023-07-20 | 3.17 | 3.98 | — | 3.7 | 0.004 | 0.64 | 0.0 | 0.05 | 14.69 | 0.00 | 2.087 | 15.50 | 4.29 | 7.5 | 92.4 | 0.1 | -1.53 | 0.84 | 0.76 | 2.00 | 3.7 | 0.005 | 0.69 | 0.0 | 0.05 | 14.24 | 0.00 | 2.117 | 15.85 | 3.74 | 8.0 | 91.9 | 0.1 | -1.37 | 0.57 | 0.84 | 0.77 | 1.84 | 11535 | 1494 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 5U76 | 8517 | 2024-03-20 | 2016-12-11 | 3.76 | 4.46 | — | 4.4 | 0.007 | 1.04 | 0.0 | 0.06 | 13.03 | 0.00 | 1.410 | 5.10 | 0.51 | 8.4 | 91.3 | 0.2 | -3.69 | 0.56 | 0.58 | 0.90 | 4.4 | 0.005 | 0.88 | 0.0 | 0.05 | 15.85 | 0.00 | 2.109 | 21.52 | 3.42 | 5.5 | 94.5 | 0.0 | -0.49 | 2.49 | 0.64 | 0.77 | 0.84 | 28364 | 3512 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DBP | 30161 | 2024-03-16 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.26 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.004 | 0.60 | 0.0 | 0.03 | 29.51 | 0.00 | 2.086 | 23.95 | 0.00 | 3.3 | 96.7 | 0.0 | 1.22 | 2.51 | 0.90 | 0.75 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✔ | 7XQi | 33397 | 2024-03-14 | 2022-05-07 | 3.7 | 4.27 | 3.41 | 4.0 | 0.006 | 0.72 | 0.0 | 0.04 | 14.16 | 0.00 | 2.304 | 5.68 | 2.27 | 2.1 | 97.9 | 0.0 | -2.27 | 0.76 | 0.86 | 3.63 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.48 | 0.00 | 2.192 | 4.70 | 1.61 | 4.4 | 95.6 | 0.0 | 2.67 | 0.64 | 0.77 | 0.85 | 3.66 | 9582 | 1176 | 6 | 0 | 0 | 0 | 0 | logfile |