Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z3Y	11066	2023-07-04	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	6NBF	0410	2023-07-05	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	8.85	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.58	0.0	0.04	13.98	0.00	2.136	6.62	1.83	1.9	98.1	0.0	0.75	1.19	0.54	0.75	2.26	9424	1148	7	0	10	0	0	logfile
✔	6F07	4163	2023-07-05	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.003	0.69	0.0	0.04	15.52	0.00	2.155	11.17	0.18	4.4	95.6	0.0	0.99	1.53	0.56	0.70	0.72	10149	1227	4	0	2	0	0	logfile
✔	7ZRE	14912	2023-07-06	2022-05-04	3.4	2.77	3.31	3.2	0.006	0.93	1.0	0.05	15.97	0.01	2.231	7.35	0.00	4.3	95.7	0.0	-0.86	0.61	0.78	2.49	3.3	0.002	0.55	0.0	0.04	16.11	0.00	2.177	11.14	0.09	3.8	96.2	0.0	0.83	0.27	0.62	0.81	2.15	10996	1447	6	0	11	0	0	logfile
✔	6NQ1	0478	2023-07-05	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.003	0.70	0.0	0.04	15.93	0.00	2.048	9.83	0.18	5.2	94.8	0.0	0.85	1.28	0.58	0.82	1.92	10046	1242	2	0	0	0	0	logfile
✔	6KSW	0775	2023-07-06	2019-08-26	3.6	3.70	—	3.7	0.008	1.08	0.0	0.06	11.37	0.01	2.245	6.68	0.25	5.4	94.6	0.0	-5.90	0.59	0.80	2.51	3.7	0.004	0.80	1.0	0.04	15.48	0.00	2.102	14.86	0.93	4.2	95.7	0.1	0.29	1.39	0.60	0.80	1.41	11661	1539	3	0	0	0	0	logfile
✔	6QMB	4594	2023-07-05	2019-02-01	3.6	3.74	3.74	3.7	0.008	0.87	0.0	0.05	14.68	0.01	2.284	3.90	0.00	3.6	96.4	0.0	-3.44	0.75	0.84	2.36	3.7	0.003	0.60	0.0	0.04	16.39	0.00	2.177	8.84	0.26	3.4	96.6	0.0	1.46	1.17	0.75	0.83	1.46	10698	1322	4	0	4	0	0	logfile
✔	7WYU	32894	2023-07-10	2022-02-16	3.4	3.42	—	3.4	0.011	1.30	0.0	0.06	18.98	0.01	1.911	9.36	10.48	7.5	92.1	0.3	-3.01	0.74	0.82	1.83	3.4	0.004	0.61	0.0	0.04	16.59	0.00	1.892	6.17	0.22	2.7	97.3	0.0	0.51	1.30	0.77	0.88	2.16	22662	2654	22	0	78	4	0	logfile
✔	6VX3	21428	2023-07-04	2020-02-21	3.7	3.91	—	3.9	0.009	1.11	0.0	0.05	19.48	0.00	1.829	25.97	4.02	7.4	92.6	0.0	-4.21	0.60	0.81	2.86	3.9	0.003	0.70	0.0	0.05	18.12	0.00	2.269	9.88	0.63	3.5	96.5	0.0	-1.77	1.33	0.59	0.79	2.06	7780	900	8	0	8	0	0	logfile
✔	6oYA	20223	2023-07-04	2019-05-14	3.3	3.88	—	3.7	0.004	0.88	0.0	0.05	15.28	0.01	2.329	5.70	0.11	6.9	93.1	0.0	-4.69	0.64	0.79	2.13	3.7	0.003	0.73	0.0	0.04	16.67	0.00	2.217	13.70	0.22	5.8	94.2	0.0	-1.32	1.21	0.63	0.78	1.56	8321	1056	5	0	1	0	0	logfile
✔	6J8E	9780	2023-07-06	2019-01-18	3.0	3.18	—	3.2	0.008	1.43	4.0	0.08	13.94	0.01	1.927	13.58	5.14	6.4	92.6	1.0	-5.60	0.61	0.77	3.02	3.2	0.003	0.79	0.0	0.04	16.50	0.00	2.238	7.50	2.18	4.8	94.8	0.4	0.64	0.87	0.61	0.85	2.29	10482	1277	7	0	10	0	0	logfile
✔	6HRB	0258	2023-07-05	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.73	0.0	0.04	13.52	0.00	2.051	13.69	0.26	3.4	96.6	0.0	-0.23	1.28	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	8iTF	35705	2023-07-05	2023-03-22	3.46	2.33	3.36	2.1	0.005	0.64	0.0	0.14	14.18	0.00	2.250	5.05	0.95	3.4	96.6	0.0	-0.32	0.77	0.78	2.35	2.2	0.004	0.63	0.0	0.04	15.94	0.00	2.172	5.80	0.32	4.9	95.1	0.0	-0.04	0.93	0.79	0.81	2.36	9551	1279	7	0	1	0	0	logfile
✔	8SAQ	40275	2023-07-09	2023-04-01	3.9	4.17	3.91	4.1	0.005	0.88	0.0	0.05	12.51	0.01	1.985	5.03	0.05	7.7	92.0	0.2	-1.78	0.73	0.77	2.26	4.1	0.003	0.78	0.0	0.04	15.40	0.00	2.102	10.82	0.29	6.3	93.5	0.1	-1.33	1.17	0.74	0.79	1.77	18946	2364	21	0	36	0	0	logfile
✔	6JYL	9718	2023-07-08	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.61	0.00	1.434	7.64	0.19	4.1	95.9	0.0	0.80	0.55	0.90	0.88	1.97	16136	1265	11	292	3	0	0	logfile
✔	6B46	7050	2023-07-09	2017-09-25	3.1	3.16	—	3.1	0.006	0.87	0.0	0.05	12.04	0.01	2.296	4.10	0.18	8.5	91.5	0.0	-3.95	0.69	0.82	3.45	3.1	0.005	0.67	0.0	0.04	15.21	0.00	2.100	9.00	0.42	9.2	90.8	0.0	-1.33	0.57	0.71	0.85	2.72	18344	2308	10	60	0	0	0	logfile
✘	7D72	30599	2023-07-16	2020-10-02	3.4	3.58	—	3.5	0.009	1.23	4.0	0.07	17.20	0.01	1.640	10.15	8.56	4.9	94.8	0.2	-2.44	0.74	0.83	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35458	4505	27	0	15	6	0	logfile
✔	7CU3	30470	2023-07-06	2020-08-20	2.65	2.44	—	2.6	0.009	0.99	0.0	0.05	17.71	0.01	2.196	6.79	3.43	4.6	95.4	0.0	-1.75	0.59	0.83	4.41	2.5	0.003	0.58	0.0	0.04	16.92	0.00	2.182	7.32	1.95	4.0	96.0	0.0	1.27	1.13	0.60	0.85	3.82	12209	1450	3	0	17	0	0	logfile
✔	6SJB	10214	2023-07-11	2019-08-13	3.7	3.91	—	3.7	0.003	0.58	0.0	0.04	13.36	0.01	2.227	4.46	2.57	2.3	97.7	0.0	-3.60	0.82	0.81	1.93	3.7	0.005	0.70	0.0	0.04	16.64	0.00	2.059	13.15	0.41	4.3	95.7	0.0	0.64	2.02	0.84	0.85	1.84	24115	2847	4	68	0	0	0	logfile
✔	6oCE	20017	2023-07-06	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.76	0.0	0.04	12.52	0.01	2.176	12.97	0.00	12.3	87.7	0.0	-2.82	1.19	0.46	0.63	—	11228	1378	2	0	0	0	0	logfile

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