Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RR7	4986	2023-11-22	2019-05-17	3.01	3.03	—	3.0	0.010	0.85	0.0	0.05	15.06	0.01	1.252	3.20	0.00	5.1	94.9	0.0	-3.62	0.77	0.81	3.57	3.0	0.002	0.51	0.0	0.04	16.28	0.00	2.014	4.88	0.05	3.9	96.1	0.0	-0.44	3.32	0.77	0.83	3.08	36290	2197	6	30	1	0	18001	logfile
✔	7XEM	33156	2023-11-17	2022-03-31	3.17	3.31	3.39	3.3	0.004	0.73	0.0	0.05	15.44	0.00	2.324	10.45	0.74	5.6	94.1	0.3	-0.39	0.64	0.80	1.85	3.3	0.002	0.57	0.0	0.04	16.72	0.00	2.285	8.06	0.09	4.0	96.0	0.0	0.63	0.38	0.63	0.81	1.35	20096	2456	12	0	4	4	0	logfile
✔	6T9N	10418	2023-11-16	2019-10-28	2.96	3.07	2.93	3.0	0.012	1.17	0.0	0.07	11.55	0.01	2.216	3.83	0.00	3.2	96.4	0.4	-3.35	0.71	0.88	4.95	3.1	0.002	0.58	0.0	0.04	15.49	0.00	2.155	8.79	0.95	1.4	98.4	0.2	1.34	1.27	0.69	0.89	4.29	16917	1920	12	0	53	0	0	logfile
✔	7WiZ	32541	2023-11-21	2022-01-05	3.2	3.39	3.17	3.3	0.013	0.81	0.0	0.05	17.00	0.00	2.045	5.24	1.85	8.2	91.7	0.2	-3.90	0.74	0.81	2.71	3.3	0.002	0.54	0.0	0.04	16.83	0.00	1.985	5.16	0.05	4.6	95.3	0.2	-0.64	1.26	0.70	0.81	2.80	35568	2228	8	0	8	0	17752	logfile
✔	5TTP	8467	2023-11-13	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.77	0.0	0.04	5.16	0.00	2.264	6.32	0.00	13.8	85.9	0.4	0.24	1.81	0.66	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	7U2K	26313	2023-11-14	2022-02-24	3.3	3.77	—	3.5	0.010	0.76	0.0	0.05	15.07	0.00	2.198	6.93	0.43	6.0	94.0	0.0	-1.90	0.83	0.89	3.29	3.6	0.002	0.57	0.0	0.04	15.27	0.00	2.204	5.35	0.00	3.5	96.5	0.0	0.54	0.50	0.78	0.85	1.93	6755	889	5	0	1	0	0	logfile
✔	7SFJ	25079	2023-11-14	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	3.87	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.48	0.0	0.04	17.67	0.00	2.281	5.23	1.85	3.2	96.8	0.0	2.36	0.47	0.58	0.77	2.97	7377	852	9	0	24	3	0	logfile
✔	7VTQ	32120	2023-11-19	2021-10-30	3.55	4.59	—	3.2	0.004	0.68	0.0	0.04	15.12	0.00	2.136	14.14	0.05	5.6	94.4	0.0	-0.05	0.74	0.61	0.73	3.3	0.002	0.70	0.0	0.04	15.85	0.00	2.112	13.74	0.12	3.3	96.7	0.0	0.45	0.53	0.87	0.80	0.58	76572	9468	24	0	24	0	0	logfile
✔	6UGE	20762	2023-11-16	2019-09-26	3.6	4.02	—	3.9	0.008	1.07	0.0	0.05	14.24	0.01	2.060	3.35	0.23	6.4	93.6	0.1	-4.80	0.71	0.69	1.89	3.9	0.002	0.55	0.0	0.04	15.72	0.00	1.974	5.45	0.15	4.1	95.9	0.0	-0.72	0.45	0.77	0.82	1.38	13876	1862	12	0	9	0	0	logfile
✔	7T6D	25713	2023-11-14	2021-12-13	3.9	4.12	3.81	4.1	0.006	0.84	2.0	0.05	13.11	0.02	2.172	12.57	1.42	2.9	97.0	0.1	1.14	0.54	0.61	0.72	4.1	0.002	0.60	0.0	0.03	14.45	0.00	2.225	8.13	0.71	2.0	98.0	0.0	2.93	0.70	0.61	0.69	0.72	7566	1181	6	0	2	0	0	logfile
✔	7SSP	25412	2023-11-16	2021-11-11	3.5	3.32	3.41	3.7	0.004	0.63	0.0	0.04	14.58	0.00	2.232	4.57	0.00	6.8	93.2	0.0	-3.24	0.71	0.80	1.40	3.6	0.002	0.61	0.0	0.04	16.46	0.00	2.303	4.43	0.17	4.8	95.2	0.0	2.51	1.79	0.71	0.81	1.38	10930	1376	8	0	0	0	0	logfile
✔	8D3Y	27168	2023-11-14	2022-06-01	3.9	3.70	3.84	3.7	0.007	0.81	0.0	0.04	17.34	0.01	2.198	10.16	0.19	6.7	93.3	0.0	-0.14	0.60	0.81	1.42	3.7	0.002	0.60	0.0	0.04	17.51	0.00	2.202	8.63	0.19	5.2	94.7	0.1	-0.16	0.35	0.60	0.80	1.33	9898	1298	3	0	0	0	0	logfile
✔	6VPC	21308	2023-11-16	2020-02-03	3.2	3.51	3.17	3.2	0.002	0.56	0.0	0.04	16.95	0.00	2.121	5.85	1.58	2.2	97.8	0.0	-1.99	0.83	0.79	1.63	3.2	0.002	0.62	0.0	0.04	18.00	0.00	2.108	7.72	0.29	2.3	97.7	0.0	0.57	1.24	0.85	0.83	1.91	16309	1633	9	154	5	0	0	logfile
✔	7URE	26710	2023-11-13	2022-04-21	3.19	3.51	3.25	3.4	0.017	0.78	0.0	0.78	14.25	0.00	2.118	9.65	0.00	5.7	94.3	0.0	-2.27	0.60	0.85	3.70	3.4	0.002	1.07	0.0	0.12	15.47	0.00	2.071	5.85	0.69	3.8	96.2	0.0	0.79	0.93	0.59	0.85	3.00	5450	678	6	0	3	0	0	logfile
✔	7E2Z	30973	2023-11-14	2021-02-07	3.1	3.34	—	3.4	0.009	1.05	0.0	0.22	14.29	0.01	2.160	5.36	0.00	1.6	98.4	0.0	2.35	0.57	0.74	1.94	3.4	0.002	0.53	0.0	0.04	15.81	0.00	2.152	6.71	0.13	1.4	98.6	0.0	1.75	0.44	0.59	0.78	2.24	6997	870	4	0	5	0	0	logfile
✔	7VZ1	32218	2023-11-20	2021-11-15	2.5	2.55	—	2.5	0.008	0.78	0.0	0.05	17.17	0.01	2.201	6.34	1.17	3.3	96.6	0.1	0.11	0.79	0.91	4.60	2.5	0.002	0.53	0.0	0.04	17.22	0.00	2.167	5.15	1.74	3.5	96.5	0.0	0.48	0.26	0.78	0.91	4.33	28737	3488	44	0	17	712	0	logfile
✔	7Y5G	33619	2023-11-13	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	7K0R	22610	2023-11-16	2020-09-04	3.3	3.86	—	3.5	0.010	0.79	0.0	0.05	13.37	0.00	2.122	3.75	1.05	2.3	97.7	0.0	-1.08	0.85	0.76	1.40	3.5	0.002	0.51	0.0	0.04	14.35	0.00	2.303	5.33	0.06	1.7	98.3	0.0	0.69	1.07	0.89	0.85	3.03	16038	2070	12	0	12	0	0	logfile
✔	7LMS	23441	2023-11-13	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	4.0	0.002	0.59	0.0	0.04	14.69	0.00	2.183	6.65	0.38	1.5	98.5	0.0	0.72	1.43	0.74	0.82	2.22	4947	613	4	0	1	0	0	logfile
✔	7LPC	23476	2023-11-16	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.16	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.46	0.0	0.04	14.99	0.00	2.267	5.36	0.00	2.6	97.4	0.0	2.24	0.55	0.66	0.84	2.91	15256	1816	8	0	40	0	0	logfile

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