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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G7T | 29823 | 2024-03-16 | 2023-02-17 | 3.2 | 3.34 | 3.14 | 3.2 | 0.007 | 0.59 | 0.0 | 0.04 | 16.31 | 0.00 | 2.218 | 4.26 | 2.29 | 3.2 | 96.8 | 0.0 | -5.23 | 0.77 | 0.81 | 2.14 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 16.98 | 0.00 | 1.204 | 7.64 | 3.12 | 6.3 | 93.7 | 0.0 | -0.89 | 3.62 | 0.80 | 0.88 | 2.05 | 14059 | 1619 | 8 | 46 | 4 | 0 | 0 | logfile |
✔ | 6GZQ | 0101 | 2024-03-21 | 2018-07-04 | 3.28 | 3.72 | — | 3.6 | 0.017 | 1.33 | 0.0 | 0.06 | 24.18 | 0.01 | 1.769 | 5.57 | 0.58 | 15.1 | 84.4 | 0.5 | -5.41 | 0.79 | 0.83 | 2.31 | 3.6 | 0.005 | 0.71 | 1.0 | 0.03 | 23.99 | 0.00 | 1.210 | 10.82 | 5.00 | 9.5 | 90.5 | 0.1 | -3.23 | 0.66 | 0.78 | 0.82 | 1.62 | 144138 | 5820 | 53 | 4540 | 0 | 0 | 0 | logfile |
✔ | 7LYT | 23601 | 2024-03-16 | 2021-03-08 | 2.9 | 2.52 | 2.91 | 3.0 | 0.009 | 0.55 | 0.0 | 0.04 | 20.71 | 0.03 | 2.087 | 7.16 | 0.33 | 0.0 | 100.0 | 0.0 | -1.59 | 0.82 | 0.80 | 2.24 | 3.0 | 0.005 | 0.87 | 0.0 | 0.04 | 21.54 | 0.00 | 1.211 | 9.74 | 1.98 | 5.9 | 94.1 | 0.0 | -0.37 | 1.22 | 0.83 | 0.82 | 2.86 | 14354 | 712 | 5 | 92 | 6 | 0 | 6722 | logfile |
✔ | 8GYW | 34378 | 2024-03-10 | 2022-09-24 | 3.9 | 3.93 | 3.77 | 4.0 | 0.008 | 1.46 | 0.0 | 0.08 | 16.78 | 0.02 | 2.008 | 6.48 | 0.30 | 0.8 | 99.2 | 0.0 | 1.24 | 0.46 | 0.73 | 1.92 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.56 | 0.00 | 1.211 | 13.52 | 5.29 | 1.9 | 98.1 | 0.0 | 2.96 | 1.23 | 0.49 | 0.76 | 1.05 | 6076 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 5NCo | 3617 | 2024-03-20 | 2017-03-06 | 4.8 | 5.02 | — | 4.8 | 0.007 | 1.14 | 0.0 | 0.05 | 23.35 | 0.00 | 1.168 | 8.54 | 9.43 | 3.1 | 96.8 | 0.1 | -2.95 | 0.70 | 0.76 | — | 4.8 | 0.004 | 0.70 | 0.0 | 0.04 | 22.85 | 0.00 | 1.213 | 26.45 | 0.03 | 5.2 | 94.7 | 0.1 | -0.07 | 1.18 | 0.71 | 0.84 | — | 101694 | 4738 | 43 | 3112 | 46 | 0 | 0 | logfile |
✔ | 7KTP | 23025 | 2024-03-15 | 2020-11-24 | 4.8 | 4.79 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.05 | 11.99 | 0.00 | 2.221 | 2.15 | 0.00 | 4.5 | 95.5 | 0.0 | -4.13 | 0.71 | 0.69 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 1.215 | 13.63 | 0.00 | 4.7 | 95.3 | 0.0 | -0.82 | 2.22 | 0.75 | 0.76 | — | 12008 | 1544 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 5KCR | 8237 | 2024-03-22 | 2016-06-06 | 3.6 | 4.09 | — | 4.0 | 0.006 | 0.62 | 0.0 | 0.07 | 22.21 | 0.01 | 2.027 | 6.59 | 0.46 | 5.7 | 92.7 | 1.7 | -2.61 | 0.75 | 0.79 | 1.17 | 4.0 | 0.006 | 0.77 | 0.0 | 0.04 | 22.79 | 0.01 | 1.216 | 18.79 | 4.45 | 6.5 | 93.0 | 0.5 | -0.81 | 0.93 | 0.77 | 0.85 | 1.42 | 145689 | 5854 | 57 | 4646 | 2 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2024-03-23 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.42 | 0.01 | 0.873 | 14.94 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 15.76 | 0.00 | 1.219 | 24.37 | 0.00 | 9.6 | 90.3 | 0.1 | -1.35 | 1.28 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2024-03-16 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 17.27 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.61 | 0.0 | 0.04 | 17.87 | 0.00 | 1.222 | 10.54 | 1.58 | 4.2 | 95.8 | 0.0 | -0.94 | 1.05 | 0.36 | 0.16 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 7Y8R | 33684 | 2024-03-24 | 2022-06-24 | 4.4 | 5.29 | 5.72 | 4.4 | 0.003 | 0.54 | 0.0 | 0.04 | 18.47 | 0.00 | 1.920 | 4.56 | 0.05 | 5.0 | 94.9 | 0.1 | -1.79 | 0.72 | 0.53 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.04 | 19.77 | 0.00 | 1.242 | 14.08 | 0.00 | 6.9 | 93.1 | 0.0 | -0.31 | 2.11 | 0.83 | 0.79 | — | 43109 | 4407 | 28 | 330 | 174 | 0 | 0 | logfile |
✔ | 6QC5 | 4497 | 2024-03-13 | 2018-12-26 | 4.3 | 4.44 | 4.37 | 4.3 | 0.009 | 1.29 | 0.0 | 1.03 | 11.86 | 0.01 | 2.162 | 8.03 | 0.72 | 12.3 | 87.5 | 0.2 | -4.12 | 0.64 | 0.77 | — | 4.3 | 0.008 | 1.70 | 0.0 | 0.31 | 13.57 | 0.01 | 1.244 | 18.02 | 0.07 | 10.0 | 90.0 | 0.0 | -1.31 | 1.02 | 0.65 | 0.77 | — | 65691 | 8136 | 57 | 0 | 16 | 0 | 0 | logfile |
✔ | 6KiG | 9995 | 2024-03-20 | 2019-07-18 | 2.9 | 2.98 | — | 2.9 | 0.009 | 1.25 | 0.0 | 0.06 | 20.73 | 0.01 | 2.255 | 8.20 | 0.03 | 2.9 | 97.1 | 0.0 | -2.57 | 0.69 | 0.74 | 2.49 | 2.9 | 0.005 | 0.74 | 5.0 | 0.05 | 19.49 | 0.01 | 1.247 | 18.58 | 3.24 | 4.0 | 96.0 | 0.0 | 0.13 | 1.28 | 0.74 | 0.80 | 2.39 | 143022 | 12888 | 108 | 0 | 846 | 54 | 0 | logfile |
✔ | 7oH5 | 12894 | 2024-03-15 | 2021-05-09 | 2.9 | 3.43 | 2.96 | 3.3 | 0.006 | 1.14 | 0.0 | 0.04 | 12.93 | 0.00 | 1.656 | 5.05 | 1.19 | 4.6 | 95.4 | 0.0 | -4.15 | 0.65 | 0.75 | 3.22 | 3.4 | 0.002 | 0.82 | 0.0 | 0.04 | 14.49 | 0.00 | 1.254 | 7.33 | 1.67 | 3.8 | 96.1 | 0.1 | -0.51 | 2.41 | 0.61 | 0.72 | 2.44 | 11603 | 1419 | 8 | 0 | 14 | 2 | 0 | logfile |
✔ | 6LLY | 0915 | 2024-03-11 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.20 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.37 | 0.00 | 1.255 | 8.18 | 2.21 | 2.8 | 97.2 | 0.0 | -0.06 | 0.47 | 0.64 | 0.80 | 1.91 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7oii | 12930 | 2024-03-22 | 2021-05-11 | 3.0 | 3.56 | 2.91 | 2.7 | 0.017 | 1.20 | 0.0 | 0.07 | 22.80 | 0.03 | 1.514 | 7.87 | 0.23 | 3.6 | 96.2 | 0.2 | -3.84 | 0.85 | 0.83 | 3.42 | 2.8 | 0.006 | 0.81 | 1.0 | 0.04 | 22.96 | 0.01 | 1.257 | 14.72 | 3.73 | 4.2 | 95.8 | 0.0 | -0.24 | 1.21 | 0.90 | 0.90 | 2.87 | 145171 | 5754 | 69 | 4648 | 424 | 0 | 0 | logfile |
✔ | 6QCT | 4512 | 2024-03-17 | 2018-12-30 | 3.2 | 3.59 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 15.71 | 0.01 | 2.075 | 4.28 | 5.87 | 5.0 | 95.0 | 0.0 | -3.92 | 0.90 | 0.84 | 3.03 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 16.34 | 0.00 | 1.257 | 7.61 | 2.36 | 2.6 | 97.4 | 0.0 | 0.03 | 1.95 | 0.92 | 0.89 | 2.75 | 18266 | 2186 | 8 | 38 | 3 | 0 | 0 | logfile |
✔ | 7R48 | 14287 | 2024-03-15 | 2022-02-08 | 2.3 | 2.31 | — | 2.3 | 0.008 | 0.85 | 0.0 | 0.85 | 18.87 | 0.01 | 1.924 | 2.56 | 1.24 | 2.1 | 97.9 | 0.0 | 0.80 | 0.74 | 0.91 | 6.11 | 2.3 | 0.007 | 1.31 | 0.0 | 0.26 | 16.78 | 0.00 | 1.259 | 4.17 | 0.89 | 1.7 | 98.3 | 0.0 | 1.80 | 0.25 | 0.75 | 0.92 | 5.58 | 69247 | 8118 | 115 | 0 | 55 | 2124 | 0 | logfile |
✔ | 7X7N | 33042 | 2024-03-20 | 2022-03-10 | 4.47 | 4.03 | 4.49 | 4.2 | 0.013 | 1.05 | 0.0 | 0.06 | 15.66 | 0.01 | 1.956 | 29.11 | 0.52 | 19.6 | 80.3 | 0.1 | -5.63 | 0.73 | 0.77 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 13.97 | 0.00 | 1.260 | 13.74 | 0.00 | 9.1 | 90.9 | 0.0 | -2.48 | 0.74 | 0.72 | 0.76 | — | 26493 | 3314 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 7NKX | 12449 | 2024-03-25 | 2021-02-19 | 2.9 | 3.17 | — | 3.2 | 0.008 | 1.17 | 2.0 | 0.06 | 19.72 | 0.01 | 1.950 | 7.11 | 0.10 | 5.5 | 94.5 | 0.0 | -0.66 | 0.83 | 0.76 | 1.50 | 3.1 | 0.008 | 0.81 | 0.0 | 0.05 | 21.26 | 0.01 | 1.265 | 18.98 | 2.99 | 5.3 | 94.7 | 0.0 | -0.33 | 1.20 | 0.84 | 0.80 | 1.72 | 49720 | 5506 | 33 | 283 | 11 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2024-03-14 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.96 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 18.35 | 0.01 | 1.266 | 30.60 | 4.47 | 4.1 | 95.9 | 0.0 | -0.17 | 2.46 | 0.78 | 0.74 | 0.37 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |