Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TD6	25824	2023-11-13	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	7RFP	24444	2023-11-13	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	7V4A	31705	2023-11-13	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.60	0.0	0.05	16.38	0.00	2.347	6.77	0.61	11.8	88.2	0.0	-3.97	1.70	0.42	0.81	3.13	1653	240	3	0	0	0	0	logfile
✔	7BW7	30229	2023-11-14	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.003	0.79	0.0	0.05	15.12	0.00	2.151	18.52	0.00	13.1	86.9	0.0	-3.97	0.75	0.70	0.62	—	8824	1091	3	0	0	0	0	logfile
✔	6LNi	0931	2023-11-13	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	8A7P	15223	2023-11-13	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.005	0.79	0.0	0.05	14.82	0.00	2.192	10.13	1.02	10.6	89.4	0.0	-3.96	0.80	0.45	0.81	3.02	4320	522	6	0	0	0	0	logfile
✔	7PY2	13708	2023-11-13	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.006	0.92	0.0	0.05	18.12	0.00	2.134	2.20	2.50	5.2	94.8	0.0	-3.96	1.38	0.49	0.88	5.69	2152	316	4	0	0	0	0	logfile
✔	7oB4	12794	2023-11-15	2021-04-21	3.22	3.25	—	3.5	0.009	1.03	0.0	0.07	13.89	0.00	2.206	23.16	0.09	3.7	96.3	0.0	-4.30	0.54	0.78	4.06	3.5	0.006	0.75	0.0	0.05	15.20	0.00	2.116	18.99	0.64	7.1	92.9	0.0	-3.95	1.20	0.44	0.75	4.91	10066	1288	14	0	0	0	0	logfile
✔	6NYG	0543	2023-11-17	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.18	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.003	0.73	0.0	0.05	13.61	0.00	2.093	18.96	0.18	11.3	88.7	0.0	-3.94	1.29	0.83	0.68	0.96	68664	9000	12	0	0	0	0	logfile
✔	7UN5	26613	2023-11-13	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	11.64	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.77	0.0	0.04	15.18	0.00	2.237	10.71	0.77	8.5	91.5	0.0	-3.92	0.47	0.35	0.74	4.54	4380	620	10	0	0	0	0	logfile
✔	6oSJ	20183	2023-11-13	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.76	0.0	0.06	16.80	0.00	2.229	8.87	5.12	13.4	86.6	0.0	-3.90	1.17	0.49	0.79	4.11	4210	610	10	0	0	0	0	logfile
✔	5YYS	6859	2023-11-18	2017-12-11	4.2	4.57	—	4.1	0.016	2.27	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.004	1.19	0.0	0.06	12.63	0.01	2.045	33.33	0.00	24.1	75.3	0.5	-3.90	1.68	0.86	0.72	—	24044	3244	4	0	0	0	0	logfile
✔	6YW7	10960	2023-11-13	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6SoF	10273	2023-11-20	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	8GH8	40036	2023-11-14	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.42	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.1	0.003	0.72	0.0	0.04	26.31	0.01	2.248	9.66	0.00	12.3	87.5	0.2	-3.87	1.07	0.53	0.52	—	6991	559	8	136	0	0	0	logfile
✔	6UM2	20816	2023-11-15	2019-10-08	4.32	4.49	—	4.3	0.013	1.78	10.0	0.09	15.37	0.01	1.505	10.33	0.41	6.7	92.9	0.4	-4.93	0.73	0.67	—	4.3	0.005	0.83	0.0	0.05	13.78	0.01	2.093	16.94	0.00	14.1	85.8	0.1	-3.87	1.39	0.80	0.76	—	13094	1686	3	0	7	0	0	logfile
✔	6H6B	0148	2023-11-14	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.004	0.89	0.0	0.18	11.48	0.00	2.140	5.82	0.25	17.3	82.7	0.0	-3.87	1.82	0.40	0.77	3.76	8060	580	10	0	0	0	4100	logfile
✔	7oVT	13089	2023-11-14	2021-06-15	2.69	2.94	2.42	2.8	0.017	1.67	0.0	0.10	13.71	0.01	2.550	2.09	0.00	3.0	97.0	0.0	-3.46	0.53	0.82	6.84	2.8	0.004	0.63	0.0	0.04	17.50	0.00	2.299	6.92	2.43	6.7	93.3	0.0	-3.86	0.55	0.57	0.86	6.08	6588	828	12	0	0	0	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5XLP	6731	2023-11-14	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile

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