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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Z4K | 14500 | 2024-03-16 | 2022-03-04 | 3.81 | 4.83 | 3.89 | 3.9 | 0.003 | 0.44 | 0.0 | 0.03 | 17.22 | 0.00 | 2.200 | 9.44 | 0.99 | 2.4 | 97.6 | 0.0 | 1.12 | 0.85 | 0.75 | 0.54 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 18.93 | 0.00 | 2.087 | 23.16 | 2.55 | 4.6 | 95.4 | 0.0 | -0.01 | 2.37 | 0.88 | 0.80 | 0.73 | 14005 | 1360 | 4 | 138 | 0 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2024-03-10 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 15.97 | 0.00 | 2.278 | 7.54 | 1.01 | 7.0 | 93.0 | 0.0 | -0.88 | 1.30 | 0.30 | 0.04 | 1.02 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7TC8 | 25805 | 2024-03-18 | 2021-12-23 | 2.4 | 2.46 | — | 2.5 | 0.008 | 0.68 | 0.0 | 0.05 | 17.52 | 0.00 | 1.659 | 12.50 | 3.31 | 2.3 | 97.7 | 0.0 | 0.38 | 0.74 | 0.86 | 5.19 | 2.5 | 0.002 | 0.41 | 0.0 | 0.04 | 17.26 | 0.00 | 1.889 | 19.46 | 1.91 | 1.8 | 98.2 | 0.0 | 2.10 | 0.28 | 0.74 | 0.86 | 5.02 | 20567 | 2113 | 8 | 0 | 4 | 0 | 3200 | logfile |
✔ | 8VJK | 43284 | 2024-03-21 | 2024-01-07 | 2.92 | 3.34 | 3.08 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 14.13 | 0.00 | 1.955 | 5.07 | 0.05 | 1.9 | 98.1 | 0.0 | 2.22 | 0.89 | 0.89 | 3.55 | 3.0 | 0.007 | 0.62 | 0.0 | 0.04 | 15.40 | 0.00 | 2.060 | 6.04 | 0.80 | 2.1 | 97.9 | 0.0 | 1.90 | 0.35 | 0.91 | 0.93 | 3.60 | 143248 | 17920 | 12 | 0 | 28 | 0 | 0 | logfile |
✔ | 7oi8 | 12921 | 2024-03-19 | 2021-05-11 | 3.5 | 3.27 | — | 3.2 | 0.006 | 0.99 | 1.0 | 0.05 | 19.44 | 0.01 | 1.998 | 7.08 | 0.03 | 4.8 | 95.1 | 0.0 | -1.78 | 0.75 | 0.78 | 2.56 | 3.2 | 0.005 | 0.68 | 1.0 | 0.04 | 20.01 | 0.00 | 1.721 | 12.53 | 2.46 | 4.7 | 95.3 | 0.0 | -0.31 | 0.44 | 0.75 | 0.79 | 2.11 | 92769 | 8181 | 60 | 1221 | 52 | 0 | 0 | logfile |
✔ | 7LRD | 23495 | 2024-03-16 | 2021-02-16 | 3.22 | 4.04 | 3.18 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 7.75 | 0.00 | 1.795 | 4.48 | 0.25 | 1.3 | 98.7 | 0.0 | 2.71 | 0.82 | 0.76 | 2.88 | 3.3 | 0.007 | 0.65 | 0.0 | 0.04 | 10.70 | 0.00 | 1.940 | 9.27 | 0.89 | 2.6 | 97.4 | 0.0 | 2.22 | 1.19 | 0.90 | 0.88 | 2.73 | 14346 | 1766 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7ADP | 11733 | 2024-03-16 | 2020-09-15 | 3.6 | 4.19 | 3.66 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 15.29 | 0.00 | 1.915 | 7.97 | 0.12 | 1.8 | 98.2 | 0.0 | -4.91 | 0.76 | 0.79 | 1.62 | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.60 | 0.00 | 2.101 | 10.13 | 3.08 | 9.6 | 90.4 | 0.0 | -1.11 | 1.69 | 0.77 | 0.82 | 1.83 | 15026 | 1880 | 10 | 0 | 3 | 0 | 0 | logfile |
✔ | 7oi9 | 12922 | 2024-03-19 | 2021-05-11 | 3.3 | 3.23 | — | 3.2 | 0.004 | 0.87 | 1.0 | 0.05 | 18.78 | 0.01 | 1.574 | 6.32 | 0.06 | 3.9 | 96.0 | 0.0 | -1.37 | 0.72 | 0.73 | 2.41 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 19.44 | 0.00 | 1.928 | 11.15 | 2.59 | 3.6 | 96.3 | 0.0 | -0.07 | 0.50 | 0.76 | 0.79 | 2.20 | 90599 | 8105 | 60 | 1148 | 52 | 0 | 0 | logfile |
✔ | 7XU4 | 33458 | 2024-03-10 | 2022-05-18 | 3.2 | 3.46 | 3.16 | 3.3 | 0.012 | 1.02 | 0.0 | 0.05 | 14.24 | 0.00 | 2.094 | 2.64 | 0.31 | 6.3 | 93.7 | 0.0 | -1.31 | 0.83 | 0.82 | 3.45 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 13.63 | 0.00 | 2.017 | 5.53 | 0.62 | 4.7 | 95.3 | 0.0 | -0.49 | 1.11 | 0.84 | 0.84 | 2.96 | 52371 | 3330 | 18 | 0 | 69 | 0 | 25311 | logfile |
✔ | 7XU5 | 33459 | 2024-03-24 | 2022-05-18 | 3.1 | 3.44 | 2.94 | 3.2 | 0.008 | 0.76 | 0.0 | 0.05 | 13.70 | 0.00 | 2.104 | 2.92 | 0.00 | 3.9 | 96.1 | 0.0 | -1.17 | 0.84 | 0.82 | 2.48 | 3.2 | 0.004 | 0.49 | 0.0 | 0.04 | 13.70 | 0.00 | 1.972 | 5.72 | 0.28 | 3.9 | 96.1 | 0.0 | -0.46 | 0.33 | 0.85 | 0.85 | 2.14 | 44292 | 2814 | 12 | 0 | 45 | 0 | 21549 | logfile |
✔ | 7WU9 | 32824 | 2024-03-11 | 2022-02-07 | 3.375 | 3.51 | 3.21 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 13.28 | 0.00 | 2.137 | 6.33 | 0.00 | 3.0 | 97.0 | 0.0 | 1.21 | 0.71 | 0.82 | 3.04 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.36 | 0.00 | 2.208 | 7.68 | 2.44 | 2.4 | 97.6 | 0.0 | 1.17 | 0.78 | 0.69 | 0.84 | 2.26 | 7369 | 1030 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S6T | 10105 | 2024-03-11 | 2019-07-03 | 4.1 | 4.22 | 4.17 | 4.1 | 0.024 | 0.98 | 0.0 | 0.08 | 13.05 | 0.00 | 1.163 | 8.26 | 0.02 | 5.6 | 94.4 | 0.0 | -3.19 | 0.74 | 0.83 | — | 4.1 | 0.002 | 0.79 | 0.0 | 0.05 | 13.33 | 0.00 | 1.786 | 8.41 | 0.05 | 3.7 | 96.3 | 0.0 | -1.04 | 0.56 | 0.73 | 0.83 | — | 56543 | 7304 | 14 | 0 | 17 | 0 | 0 | logfile |
✔ | 6VTT | 21383 | 2024-03-17 | 2020-02-13 | 3.7 | 4.22 | 3.79 | 4.0 | 0.005 | 0.82 | 3.0 | 0.05 | 14.72 | 0.01 | 2.214 | 6.21 | 0.00 | 4.6 | 95.4 | 0.0 | -4.61 | 0.82 | 0.82 | 2.05 | 4.0 | 0.006 | 0.73 | 0.0 | 0.05 | 13.42 | 0.00 | 2.157 | 10.43 | 2.77 | 7.9 | 92.1 | 0.0 | -2.12 | 0.50 | 0.83 | 0.84 | 1.80 | 16607 | 1928 | 36 | 0 | 103 | 0 | 0 | logfile |
✔ | 7oiB | 12924 | 2024-03-18 | 2021-05-11 | 3.3 | 3.27 | — | 3.2 | 0.004 | 0.86 | 0.0 | 0.05 | 18.94 | 0.01 | 2.019 | 6.14 | 0.03 | 3.8 | 96.2 | 0.0 | -1.30 | 0.76 | 0.81 | 2.48 | 3.2 | 0.005 | 0.71 | 1.0 | 0.04 | 19.78 | 0.01 | 1.790 | 12.65 | 3.35 | 4.3 | 95.6 | 0.0 | -0.07 | 0.48 | 0.79 | 0.87 | 2.38 | 88360 | 7838 | 56 | 1148 | 51 | 0 | 0 | logfile |
✔ | 8DR7 | 27673 | 2024-03-24 | 2022-07-20 | 2.7 | 3.41 | 2.84 | 3.2 | 0.008 | 0.60 | 0.0 | 0.04 | 17.41 | 0.00 | 1.945 | 4.68 | 0.91 | 1.4 | 98.6 | 0.0 | 1.90 | 0.85 | 0.85 | 2.57 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 17.49 | 0.00 | 1.923 | 5.36 | 1.34 | 2.4 | 97.6 | 0.0 | 1.36 | 1.06 | 0.79 | 0.85 | 2.97 | 43060 | 2600 | 16 | 50 | 8 | 0 | 21405 | logfile |
✔ | 7TGY | 25889 | 2024-03-20 | 2022-01-09 | 3.0 | 3.76 | — | 3.5 | 0.010 | 0.87 | 0.0 | 0.06 | 14.87 | 0.01 | 1.886 | 9.61 | 0.18 | 7.8 | 92.1 | 0.0 | -2.50 | 0.86 | 0.87 | 3.21 | 3.5 | 0.003 | 0.63 | 0.0 | 0.05 | 13.87 | 0.00 | 2.205 | 5.26 | 0.78 | 4.2 | 95.8 | 0.0 | -0.45 | 1.02 | 0.84 | 0.86 | 2.45 | 25999 | 3254 | 15 | 0 | 42 | 0 | 0 | logfile |
✔ | 7EB2 | 31049 | 2024-03-17 | 2021-03-08 | 3.5 | 3.43 | — | 3.4 | 0.007 | 0.76 | 0.0 | 0.11 | 11.77 | 0.00 | 2.092 | 7.56 | 0.00 | 3.6 | 96.4 | 0.0 | -1.24 | 0.79 | 0.74 | 1.53 | 3.4 | 0.003 | 0.91 | 0.0 | 0.06 | 15.40 | 0.00 | 2.139 | 14.65 | 2.63 | 3.4 | 96.5 | 0.0 | 0.03 | 1.03 | 0.81 | 0.76 | 1.31 | 18497 | 2337 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XU6 | 33460 | 2024-03-26 | 2022-05-18 | 2.9 | 3.40 | 2.92 | 3.2 | 0.012 | 0.96 | 0.0 | 0.05 | 14.18 | 0.01 | 2.069 | 3.27 | 0.74 | 6.7 | 93.3 | 0.0 | -1.74 | 0.80 | 0.78 | 2.99 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 13.85 | 0.00 | 1.936 | 8.27 | 0.67 | 5.1 | 94.9 | 0.0 | -0.79 | 0.45 | 0.82 | 0.81 | 3.06 | 51464 | 3267 | 18 | 0 | 66 | 0 | 24902 | logfile |
✔ | 8DK1 | 27480 | 2024-03-18 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 12.80 | 0.00 | 2.259 | 4.00 | 1.10 | 3.7 | 96.3 | 0.0 | 2.59 | 0.63 | 0.85 | 0.90 | 2.22 | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TW1 | 26147 | 2024-03-19 | 2022-02-06 | 4.6 | 3.99 | — | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 13.82 | 0.00 | 2.117 | 7.55 | 0.08 | 2.5 | 97.5 | 0.0 | -0.20 | 0.75 | 0.78 | — | 3.7 | 0.005 | 0.71 | 0.0 | 0.04 | 14.02 | 0.00 | 2.104 | 15.31 | 0.00 | 5.1 | 94.9 | 0.0 | -0.47 | 1.17 | 0.75 | 0.79 | — | 23625 | 2993 | 4 | 0 | 0 | 0 | 0 | logfile |