Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LZi	23607	2023-07-06	2021-03-09	4.39	3.64	—	3.5	0.005	0.94	0.0	0.06	10.79	0.01	2.234	4.41	0.32	5.5	94.5	0.0	-4.68	0.74	0.74	—	3.5	0.003	0.68	0.0	0.05	12.99	0.00	2.039	13.65	0.00	4.1	95.9	0.0	-0.83	2.71	0.75	0.76	—	11782	1484	12	0	8	0	0	logfile
✔	6X40	22038	2023-07-08	2020-05-21	2.86	3.10	2.91	3.0	0.008	1.12	3.0	0.13	12.72	0.01	2.233	7.24	0.42	4.2	95.8	0.0	-2.03	0.71	0.86	4.16	3.0	0.005	0.68	0.0	0.05	16.34	0.00	2.117	11.05	3.88	4.2	95.8	0.0	-0.10	1.28	0.70	0.88	3.75	17411	2121	17	0	26	0	0	logfile
✔	7TD3	25822	2023-07-05	2021-12-30	3.0	3.04	—	3.0	0.007	0.79	3.0	0.06	12.07	0.00	2.059	3.00	0.81	4.2	95.8	0.0	-0.45	0.62	0.82	3.73	3.0	0.002	0.52	0.0	0.04	15.53	0.00	2.149	5.51	1.90	2.3	97.7	0.0	1.31	1.18	0.61	0.83	2.58	7035	909	4	0	2	0	0	logfile
✔	7VZ4	32220	2023-07-06	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.66	0.0	0.04	28.48	0.00	2.304	4.22	0.49	0.5	99.5	0.0	2.82	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	6W1Y	21518	2023-07-08	2020-03-04	3.35	3.94	3.27	3.8	0.017	1.32	0.0	0.31	11.79	0.01	2.330	2.67	0.82	5.4	94.6	0.0	-5.17	0.77	0.87	3.89	3.8	0.003	0.97	0.0	0.12	13.53	0.00	2.088	4.33	0.38	3.0	97.0	0.0	-0.18	1.06	0.77	0.87	3.11	16845	1970	25	0	40	0	0	logfile
✔	7QHB	13969	2023-07-07	2021-12-11	3.5	3.17	3.39	3.4	0.018	1.05	2.0	0.07	15.22	0.01	2.144	12.72	0.55	9.1	90.9	0.0	-2.00	0.67	0.74	3.10	3.4	0.003	0.61	0.0	0.04	15.49	0.00	2.113	9.34	0.28	3.3	96.7	0.0	0.96	0.57	0.67	0.74	2.85	15052	1966	12	0	24	0	0	logfile
✔	6U9G	20698	2023-07-09	2019-09-08	3.98	4.04	—	4.0	0.005	1.00	0.0	0.06	9.07	0.00	2.228	5.61	0.00	12.3	87.7	0.0	-4.65	0.78	0.80	2.19	4.0	0.003	0.68	0.0	0.05	15.31	0.00	2.100	10.81	0.36	11.6	88.4	0.0	-2.95	2.50	0.79	0.81	1.67	18219	2355	6	0	0	0	0	logfile
✔	7MQF	23945	2023-07-11	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	6QNo	4598	2023-07-05	2019-02-11	4.38	4.65	—	4.4	0.010	1.25	0.0	0.07	11.75	0.01	2.227	12.05	1.65	11.6	88.4	0.0	-3.96	0.80	0.75	—	4.4	0.004	0.78	0.0	0.05	12.15	0.00	2.138	20.55	0.26	9.2	90.8	0.0	-1.92	0.77	0.80	0.75	—	10429	1332	8	0	3	0	0	logfile
✔	7TC0	25803	2023-07-07	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	13.32	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	3.2	0.003	0.61	0.0	0.04	14.94	0.00	2.146	5.93	0.14	5.4	94.6	0.0	0.74	1.30	0.76	0.88	2.00	13809	1781	4	0	11	0	0	logfile
✔	7UT4	26754	2023-07-17	2022-04-26	3.9	4.06	—	4.0	0.006	0.93	0.0	0.04	18.88	0.01	2.087	5.16	0.53	5.0	94.9	0.0	-0.40	0.44	0.69	1.12	4.0	0.003	0.56	0.0	0.03	19.01	0.00	1.978	11.45	0.57	6.2	93.8	0.0	1.01	2.38	0.50	0.73	1.23	39740	2448	2	0	0	0	20092	logfile
✔	6UUS	20901	2023-07-05	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	7B5M	12040	2023-07-06	2020-12-05	3.91	4.16	3.79	3.9	0.005	0.87	1.0	0.05	15.58	0.01	2.001	15.24	0.22	10.2	89.8	0.0	-2.61	0.83	0.79	1.50	3.9	0.003	0.67	1.0	0.04	16.87	0.00	2.066	15.68	0.36	8.6	91.4	0.0	-0.99	0.48	0.83	0.79	1.36	12530	1561	10	0	5	0	0	logfile
✔	7ZHA	14728	2023-07-03	2022-04-05	3.55	3.96	3.62	4.0	0.005	0.83	0.0	0.04	14.23	0.01	2.352	15.98	0.50	4.8	95.2	0.0	1.39	0.58	0.72	1.74	4.0	0.003	0.72	0.0	0.04	16.49	0.00	2.174	15.98	0.50	5.0	94.8	0.2	1.36	0.85	0.58	0.73	1.54	3836	487	1	0	1	0	0	logfile
✔	7JZ2	22528	2023-07-11	2020-09-01	2.5	2.95	—	3.0	0.033	1.28	0.0	0.53	13.85	0.00	2.070	35.46	1.38	3.6	96.4	0.0	-2.16	0.61	0.72	2.30	3.0	0.004	1.18	0.0	0.06	17.05	0.00	1.792	13.65	2.51	4.1	95.9	0.0	0.11	1.18	0.53	0.72	2.71	22866	2871	24	0	24	0	0	logfile
✔	8BC2	15960	2023-07-08	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.84	4.09	2.7	0.003	0.56	0.0	0.04	16.80	0.00	2.053	4.98	1.26	1.4	98.6	0.0	1.88	1.05	0.76	0.83	4.52	16770	2180	20	0	0	460	0	logfile
✔	7WBU	32406	2023-07-07	2021-12-17	3.42	3.70	—	3.6	0.003	0.59	1.0	0.04	15.37	0.01	2.145	7.00	0.37	2.2	97.8	0.0	0.89	0.67	0.73	1.75	3.6	0.003	0.61	0.0	0.04	17.09	0.00	2.215	9.24	0.24	2.7	97.3	0.0	0.75	0.48	0.69	0.79	1.88	7170	898	1	0	1	0	0	logfile
✔	6KZ4	0785	2023-07-08	2019-09-23	3.0	3.18	—	3.1	0.005	0.64	0.0	0.05	13.57	0.00	2.170	10.13	0.00	9.5	90.5	0.0	-4.51	0.80	0.86	2.99	3.1	0.003	0.63	0.0	0.05	15.48	0.00	2.151	9.90	2.05	9.2	90.8	0.0	-2.19	1.43	0.79	0.86	3.09	16698	2196	6	0	0	0	0	logfile
✔	7PTY	13643	2023-07-06	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.002	0.63	0.0	0.04	13.82	0.00	2.163	16.37	0.00	7.9	92.1	0.0	-0.80	0.39	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	6T6V	10387	2023-07-04	2019-10-19	4.5	4.58	—	4.5	0.009	1.34	1.0	0.08	15.46	0.01	1.944	15.31	0.00	6.4	93.6	0.0	-4.09	0.63	0.78	—	4.5	0.003	0.80	0.0	0.04	13.87	0.00	2.205	16.43	0.00	4.6	95.4	0.0	-0.06	1.28	0.62	0.78	—	5868	742	1	0	3	0	0	logfile

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