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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6KPK | 0749 | 2023-12-09 | 2019-08-15 | 2.3 | 3.44 | — | 3.0 | 0.006 | 0.71 | 0.0 | 0.06 | 12.55 | 0.00 | 2.127 | 4.93 | 0.37 | 5.5 | 94.5 | 0.0 | -3.66 | 0.84 | 0.88 | 4.21 | 3.2 | 0.004 | 0.72 | 1.0 | 0.13 | 14.34 | 0.00 | 1.964 | 5.21 | 0.69 | 3.9 | 96.1 | 0.0 | 0.98 | 0.75 | 0.83 | 0.89 | 4.30 | 62209 | 3936 | 24 | 0 | 24 | 0 | 31225 | logfile |
✔ | 6WZG | 21972 | 2023-12-08 | 2020-05-13 | 2.3 | 2.06 | 2.21 | 2.3 | 0.012 | 1.56 | 18.0 | 0.12 | 14.02 | 0.01 | 2.270 | 4.92 | 1.65 | 2.0 | 98.0 | 0.0 | 0.81 | 0.66 | 0.71 | 4.83 | 2.3 | 0.004 | 0.62 | 0.0 | 0.04 | 16.41 | 0.00 | 2.112 | 6.07 | 1.54 | 1.9 | 98.1 | 0.0 | 1.42 | 0.99 | 0.73 | 0.87 | 5.09 | 8939 | 1165 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVA | 20906 | 2023-12-09 | 2019-11-01 | 2.3 | 2.12 | 2.31 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 18.04 | 0.00 | 2.207 | 6.66 | 3.36 | 3.2 | 96.8 | 0.0 | -2.29 | 0.63 | 0.72 | 2.83 | 2.3 | 0.003 | 0.63 | 0.0 | 0.04 | 18.40 | 0.00 | 2.148 | 9.03 | 3.26 | 4.6 | 95.4 | 0.0 | 0.18 | 1.31 | 0.66 | 0.79 | 2.96 | 9561 | 1199 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E46 | 27881 | 2023-12-09 | 2022-08-17 | 2.32 | 2.94 | 2.69 | 2.8 | 0.006 | 0.41 | 0.0 | 0.08 | 22.17 | 0.02 | 2.015 | 1.38 | 0.53 | 5.1 | 94.8 | 0.1 | -0.35 | 0.70 | 0.90 | 5.69 | 2.8 | 0.005 | 0.64 | 0.0 | 0.04 | 22.14 | 0.01 | 1.947 | 1.88 | 0.85 | 5.8 | 94.0 | 0.3 | -0.45 | 0.59 | 0.68 | 0.90 | 5.87 | 115754 | 1179 | 11 | 3015 | 1 | 0 | 41809 | logfile |
✔ | 8E47 | 27882 | 2023-12-09 | 2022-08-17 | 2.32 | 2.95 | 2.51 | 2.8 | 0.005 | 0.42 | 0.0 | 0.09 | 21.98 | 0.02 | 1.901 | 1.08 | 0.96 | 3.9 | 96.1 | 0.0 | 0.60 | 0.74 | 0.91 | 4.96 | 2.8 | 0.005 | 0.68 | 0.0 | 0.05 | 21.88 | 0.01 | 1.876 | 1.98 | 1.49 | 5.4 | 94.5 | 0.1 | -0.74 | 0.38 | 0.71 | 0.90 | 5.43 | 115917 | 1179 | 11 | 3016 | 1 | 0 | 41886 | logfile |
✔ | 7SQ6 | 25377 | 2023-12-10 | 2021-11-04 | 2.32 | 2.12 | — | 2.3 | 0.006 | 0.78 | 0.0 | 0.06 | 16.71 | 0.00 | 2.408 | 4.99 | 0.00 | 2.8 | 97.2 | 0.0 | 1.57 | 0.69 | 0.88 | 4.86 | 2.3 | 0.003 | 0.55 | 0.0 | 0.04 | 16.64 | 0.00 | 2.230 | 3.53 | 2.27 | 1.5 | 98.5 | 0.0 | 2.19 | 0.92 | 0.70 | 0.90 | 4.71 | 15342 | 1868 | 16 | 0 | 14 | 12 | 0 | logfile |
✔ | 7QKW | 14055 | 2023-12-07 | 2021-12-19 | 2.32 | 1.74 | 2.60 | 2.3 | 0.010 | 1.93 | 1.0 | 0.10 | 13.53 | 0.01 | 2.534 | 0.00 | 0.00 | 5.4 | 94.6 | 0.0 | -2.79 | 0.41 | 0.81 | 7.02 | 2.3 | 0.003 | 0.54 | 0.0 | 0.05 | 16.64 | 0.00 | 2.487 | 3.40 | 2.17 | 3.7 | 96.3 | 0.0 | -2.92 | 1.37 | 0.41 | 0.85 | 6.06 | 4707 | 306 | 6 | 0 | 0 | 0 | 2439 | logfile |
✔ | 6VSA | 21373 | 2023-12-09 | 2020-02-10 | 2.32 | 3.14 | — | 2.5 | 0.013 | 2.26 | 75.0 | 0.16 | 18.03 | 0.01 | 2.048 | 13.16 | 4.44 | 2.3 | 97.7 | 0.0 | -1.58 | 0.94 | 0.94 | 4.86 | 2.6 | 0.004 | 0.59 | 0.0 | 0.04 | 17.37 | 0.00 | 2.166 | 11.48 | 1.74 | 0.4 | 99.5 | 0.1 | 1.16 | 1.15 | 0.93 | 0.90 | 4.49 | 9712 | 1175 | 10 | 0 | 0 | 42 | 0 | logfile |
✔ | 7UKH | 26581 | 2023-12-09 | 2022-04-01 | 2.33 | 2.55 | 2.38 | 2.5 | 0.004 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.035 | 7.98 | 1.80 | 2.9 | 97.1 | 0.0 | 0.99 | 0.77 | 0.85 | 3.75 | 2.5 | 0.003 | 0.54 | 0.0 | 0.04 | 18.19 | 0.00 | 2.189 | 7.26 | 1.41 | 2.6 | 97.4 | 0.0 | 1.49 | 0.29 | 0.75 | 0.86 | 3.77 | 12340 | 1536 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7WCM | 32424 | 2023-12-08 | 2021-12-20 | 2.33 | 2.14 | — | 2.2 | 0.005 | 0.70 | 0.0 | 0.16 | 14.14 | 0.00 | 2.281 | 3.66 | 0.00 | 2.5 | 97.5 | 0.0 | 1.05 | 0.64 | 0.84 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8232 | 1047 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YGA | 33813 | 2023-12-08 | 2022-07-11 | 2.35 | 3.08 | 2.44 | 2.8 | 0.008 | 0.62 | 0.0 | 0.04 | 23.34 | 0.01 | 1.779 | 10.87 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.87 | — | 2.8 | 0.007 | 0.61 | 0.0 | 0.04 | 23.07 | 0.00 | 1.828 | 12.18 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.89 | 0.88 | — | 8692 | 0 | 3 | 407 | 8 | 0 | 0 | logfile |
✘ | 6KMW | 0726 | 2023-12-09 | 2019-08-01 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✔ | 8GZ8 | 34392 | 2023-12-07 | 2022-09-26 | 2.35 | 2.27 | 2.10 | 2.5 | 0.005 | 0.73 | 0.0 | 0.06 | 14.15 | 0.00 | 2.500 | 6.32 | 0.00 | 0.5 | 99.5 | 0.0 | -0.71 | 0.43 | 0.88 | 4.53 | 2.6 | 0.007 | 0.76 | 0.0 | 0.06 | 15.02 | 0.00 | 2.405 | 4.36 | 2.27 | 1.1 | 98.9 | 0.0 | -0.76 | 0.87 | 0.41 | 0.89 | 4.74 | 3336 | 540 | 71 | 0 | 0 | 20 | 0 | logfile |
✔ | 7o0U | 12679 | 2023-12-08 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.018 | 4.37 | 0.0 | 0.06 | 22.61 | 0.01 | 2.121 | 1.73 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.3 | 0.004 | 1.70 | 0.0 | 0.04 | 19.36 | 0.00 | 1.811 | 7.40 | 1.28 | 0.9 | 99.1 | 0.0 | 3.70 | 0.50 | 0.84 | 0.90 | 4.35 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 7RZT | 24777 | 2023-12-07 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.52 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.26 | 0.24 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T4N | 25681 | 2023-12-08 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 16.48 | 0.00 | 2.284 | 5.93 | 1.53 | 1.0 | 99.0 | 0.0 | 1.61 | 0.24 | 0.66 | 0.87 | 3.71 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E32 | 27854 | 2023-12-09 | 2022-08-16 | 2.35 | 2.96 | 2.64 | 2.8 | 0.006 | 0.51 | 0.0 | 0.03 | 22.21 | 0.02 | 2.005 | 1.20 | 0.74 | 4.6 | 95.4 | 0.0 | 0.03 | 0.74 | 0.91 | 5.35 | 2.8 | 0.006 | 0.65 | 0.0 | 0.04 | 22.09 | 0.01 | 1.957 | 1.76 | 1.27 | 5.7 | 94.3 | 0.0 | -0.67 | 0.26 | 0.70 | 0.90 | 5.49 | 115899 | 1179 | 11 | 3016 | 2 | 1 | 41852 | logfile |
✔ | 8JLB | 36391 | 2023-12-09 | 2023-06-02 | 2.36 | 2.12 | 2.25 | 2.5 | 0.004 | 0.69 | 0.0 | 0.04 | 29.91 | 0.01 | 1.988 | 3.26 | 0.16 | 1.5 | 98.5 | 0.0 | 0.69 | 0.76 | 0.85 | 3.59 | 1.7 | 0.004 | 0.59 | 0.0 | 0.04 | 28.14 | 0.00 | 2.112 | 4.30 | 0.49 | 1.4 | 98.6 | 0.0 | 3.04 | 1.53 | 0.77 | 0.85 | 3.43 | 11844 | 746 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 8PKF | 17737 | 2023-12-07 | 2023-06-26 | 2.3673 | 1.91 | 2.30 | 2.6 | 0.013 | 1.73 | 0.0 | 0.12 | 11.30 | 0.01 | 2.355 | 0.12 | 0.00 | 2.3 | 97.7 | 0.0 | -2.77 | 0.43 | 0.75 | 4.64 | 2.6 | 0.003 | 0.61 | 0.0 | 0.05 | 18.27 | 0.00 | 2.287 | 8.82 | 2.14 | 4.2 | 95.8 | 0.0 | -2.40 | 1.97 | 0.52 | 0.84 | 4.29 | 4308 | 552 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JUN | 36662 | 2023-12-09 | 2023-06-26 | 2.38 | 2.77 | 2.52 | 2.7 | 0.007 | 1.00 | 0.0 | 0.05 | 14.89 | 0.00 | 1.983 | 7.87 | 0.00 | 4.7 | 95.3 | 0.0 | -1.69 | 0.64 | 0.81 | 3.78 | 2.7 | 0.003 | 0.56 | 0.0 | 0.04 | 16.43 | 0.00 | 1.896 | 5.98 | 1.32 | 3.3 | 96.7 | 0.0 | 0.75 | 1.23 | 0.66 | 0.84 | 3.78 | 11098 | 1356 | 4 | 0 | 4 | 0 | 0 | logfile |