Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DBG	27283	2023-08-13	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	8DBH	27284	2023-08-20	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	15.18	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.49	0.0	0.05	15.66	0.00	1.961	5.07	1.78	3.7	96.3	0.0	1.16	0.91	0.74	0.90	5.57	28884	3708	36	0	60	24	0	logfile
✔	7YBU	33729	2023-08-10	2022-06-29	2.2	2.92	2.20	2.4	0.008	1.10	7.0	0.08	12.55	0.01	2.192	10.83	0.41	2.0	98.0	0.0	0.51	0.84	0.82	3.72	2.5	0.005	0.62	0.0	0.05	14.58	0.00	2.174	6.25	0.89	2.7	97.3	0.0	0.61	1.24	0.86	0.88	3.85	54318	7062	18	0	6	0	0	logfile
✔	7oF0	12865	2023-08-24	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.32	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	2.8	0.005	0.66	0.0	0.04	16.29	0.01	1.791	10.39	1.47	3.0	97.0	0.0	1.11	0.46	0.85	0.87	3.46	99476	8446	62	1432	64	0	0	logfile
✔	7XKT	33270	2023-08-24	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	18.94	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.57	0.0	0.04	16.83	0.00	2.157	3.24	0.22	2.5	97.5	0.0	4.54	1.26	0.56	0.81	4.01	34488	1992	36	0	108	444	16008	logfile
✔	7TYF	26178	2023-08-11	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.45	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.64	0.0	0.04	16.18	0.00	2.202	6.55	1.26	2.3	97.7	0.0	0.96	0.50	0.66	0.86	4.67	10331	1266	12	0	16	83	0	logfile
✔	6R7G	4740	2023-08-17	2019-03-28	2.2	2.28	—	2.3	0.006	0.85	0.0	0.05	13.63	0.01	1.880	1.89	3.05	4.3	95.7	0.0	-2.46	0.58	0.88	6.31	2.3	0.003	0.61	0.0	0.04	14.57	0.00	2.192	4.82	0.66	4.5	95.5	0.0	1.60	0.91	0.58	0.90	6.19	22012	2717	27	69	0	92	0	logfile
✔	7P8W	13256	2023-08-15	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	8oUZ	17206	2023-08-13	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	15.86	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.56	0.0	0.04	16.21	0.00	1.752	5.24	2.00	3.8	96.2	0.0	0.75	0.47	0.73	0.79	4.31	14822	924	11	0	6	142	7373	logfile
✔	7P6B	13224	2023-08-09	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✘	7RiG	24479	2023-08-22	2021-07-19	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32804	4128	12	0	22	278	0	logfile
✔	7BGL	12183	2023-08-17	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.70	0.0	0.08	19.34	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.002	0.59	0.0	0.04	17.17	0.00	2.143	8.93	3.27	7.1	92.9	0.0	-0.12	0.94	0.74	0.90	3.06	120484	15626	104	0	52	0	0	logfile
✔	8G5C	29739	2023-08-13	2023-02-12	2.2	2.30	2.19	2.3	0.046	1.77	0.0	0.04	18.34	0.01	1.577	13.99	1.04	2.3	97.7	0.0	1.38	0.73	0.85	4.82	2.3	0.006	0.79	0.0	0.05	17.68	0.00	2.004	14.88	1.17	2.4	97.6	0.0	1.02	0.52	0.79	0.90	4.97	14873	1869	12	0	11	59	0	logfile
✔	7ST9	25422	2023-08-26	2021-11-12	2.2	2.95	—	2.8	0.002	0.46	0.0	0.04	16.91	0.00	1.796	2.94	0.71	1.5	98.5	0.0	2.56	0.82	0.78	3.47	2.8	0.010	0.65	0.0	0.04	17.49	0.00	1.694	4.39	1.35	1.4	98.6	0.0	2.03	2.70	0.82	0.86	3.68	46553	2802	25	36	9	423	22930	logfile
✔	7Y7V	33671	2023-08-09	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.30	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.003	0.58	0.0	0.04	15.87	0.00	2.209	4.91	3.54	2.5	97.5	0.0	1.86	0.36	0.69	0.86	3.98	4341	532	1	0	4	58	0	logfile
✔	7N06	24101	2023-08-15	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.55	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.52	0.0	0.05	16.56	0.00	2.105	3.80	0.92	1.5	98.5	0.0	0.44	1.11	0.84	0.90	6.25	17223	2082	21	18	0	555	0	logfile
✔	8G46	29714	2023-08-10	2023-02-08	2.2	2.34	2.28	2.4	0.009	0.98	0.0	0.06	15.92	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.003	0.65	0.0	0.04	16.36	0.00	2.128	5.78	1.27	2.7	97.3	0.0	0.07	0.27	0.62	0.83	4.26	8603	1064	7	0	2	110	0	logfile
✔	7UZS	26917	2023-08-11	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.1	0.004	0.58	0.0	0.04	17.92	0.00	2.030	4.15	2.15	2.2	97.8	0.0	1.03	0.31	0.64	0.87	6.34	10550	658	1	0	0	193	5183	logfile
✘	7W9K	32368	2023-08-13	2021-12-09	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14933	1705	9	0	43	9	0	logfile
✔	8A2U	15107	2023-08-13	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile

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