Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VXi	21438	2023-07-05	2020-02-21	3.7	3.67	—	3.7	0.008	1.00	0.0	0.06	16.00	0.00	2.281	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	3.7	0.005	0.80	0.0	0.05	17.09	0.00	2.133	13.85	0.83	9.9	90.0	0.1	-2.53	0.59	0.61	0.80	2.64	8898	1132	4	0	3	0	0	logfile
✔	7A4A	11630	2023-07-09	2020-08-19	3.76	3.95	3.75	4.0	0.007	0.71	0.0	0.04	11.65	0.01	2.109	13.28	2.96	12.8	87.2	0.0	-6.00	0.69	0.78	2.12	4.0	0.003	0.74	0.0	0.05	14.47	0.00	2.177	13.38	0.51	10.3	89.7	0.0	-3.32	0.87	0.67	0.77	2.19	19785	1317	6	0	3	0	9618	logfile
✔	6RDF	4816	2023-07-09	2019-04-12	3.2	3.30	3.25	3.2	0.008	0.89	0.0	0.05	13.40	0.01	2.212	4.09	0.15	4.7	95.2	0.2	-6.00	0.50	0.84	3.59	3.3	0.004	0.66	0.0	0.04	15.40	0.00	2.061	8.14	0.34	4.1	95.8	0.1	0.89	1.18	0.51	0.87	2.57	19855	2597	18	0	1	29	0	logfile
✔	7EJ2	31149	2023-07-10	2021-04-01	3.3	3.53	—	3.4	0.009	0.94	0.0	0.06	15.52	0.01	2.290	7.49	0.19	4.8	95.1	0.1	-5.99	0.81	0.85	3.23	3.4	0.003	0.67	0.0	0.04	15.70	0.00	2.192	8.75	0.24	2.2	97.8	0.0	-1.52	0.57	0.84	0.87	2.77	20968	2728	12	0	4	0	0	logfile
✔	7DY6	30914	2023-07-16	2021-01-20	3.68	3.78	—	3.7	0.009	0.82	0.0	0.05	18.87	0.00	1.999	35.57	13.76	14.4	85.6	0.0	-5.99	0.73	0.84	1.74	3.7	0.002	0.55	0.0	0.04	18.72	0.00	1.923	39.23	0.20	6.5	93.5	0.0	-2.99	2.71	0.72	0.82	1.43	35762	4187	12	111	3	0	532	logfile
✔	6HYP	0309	2023-07-06	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.88	0.00	1.995	5.56	0.00	13.4	86.3	0.2	-1.62	0.63	0.77	0.75	—	12392	2082	1	0	192	0	0	logfile
✔	7CMi	30407	2023-07-04	2020-07-27	2.9	3.36	—	3.3	0.006	1.01	0.0	0.05	15.07	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.004	0.81	0.0	0.05	16.52	0.00	2.092	8.50	2.49	7.4	92.5	0.1	-0.12	1.14	0.69	0.86	1.77	7353	928	7	0	10	6	0	logfile
✔	5YYS	6859	2023-07-11	2017-12-11	4.2	4.57	—	4.1	0.016	2.27	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.004	1.19	0.0	0.06	12.63	0.01	2.045	33.33	0.00	24.1	75.3	0.5	-3.90	1.68	0.86	0.72	—	24044	3244	4	0	0	0	0	logfile
✔	6LMU	0920	2023-07-10	2019-12-26	3.4	3.65	3.35	3.7	0.010	1.16	0.0	0.06	16.07	0.01	2.320	5.34	1.50	10.7	89.3	0.0	-5.98	0.66	0.73	2.00	3.6	0.004	0.81	0.0	0.04	16.49	0.00	2.231	11.17	0.55	8.0	92.0	0.0	0.05	0.58	0.59	0.73	1.17	22429	2893	11	0	0	0	0	logfile
✔	7CMH	30406	2023-07-04	2020-07-27	3.4	3.57	—	3.6	0.006	1.06	0.0	0.06	15.20	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.81	2.75	3.5	0.003	0.70	0.0	0.04	16.20	0.00	2.163	8.01	1.18	6.7	93.2	0.1	-0.85	0.60	0.64	0.82	1.78	7368	928	7	0	10	0	0	logfile
✔	7K4F	22667	2023-07-09	2020-09-15	3.75	4.23	—	4.2	0.012	1.38	0.0	0.06	12.35	0.01	2.231	4.24	1.50	12.1	87.9	0.0	-5.98	0.57	0.85	2.49	4.2	0.003	0.89	0.0	0.04	16.50	0.00	2.201	10.32	0.52	9.6	90.4	0.0	-1.31	3.61	0.61	0.85	1.91	19875	2456	8	0	6	0	0	logfile
✔	7BVP	30220	2023-07-18	2020-04-11	3.45	3.54	—	3.5	0.004	0.72	0.0	0.05	12.39	0.01	2.094	5.34	3.34	4.3	95.7	0.0	-5.97	0.74	0.79	2.71	3.5	0.005	0.67	0.0	0.05	15.03	0.00	1.842	8.33	0.26	4.9	95.1	0.0	-1.17	1.31	0.78	0.87	2.53	40146	5214	12	0	18	0	0	logfile
✘	6BBM	7076	2023-07-11	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23956	2662	15	0	623	0	0	logfile
✔	6Mi7	9125	2023-07-04	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.42	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.75	0.0	0.04	13.75	0.00	2.152	9.92	0.00	6.0	94.0	0.0	-2.27	1.96	0.59	0.80	—	7285	931	6	0	1	0	0	logfile
✔	6G2J	4345	2023-07-07	2018-03-23	3.3	3.41	3.49	3.4	0.009	1.17	0.0	1.03	12.54	0.01	1.499	6.66	0.06	14.9	84.7	0.4	-5.96	0.59	0.77	3.32	3.4	0.009	1.68	0.0	0.31	16.48	0.01	1.967	15.56	0.48	11.4	88.5	0.1	-2.07	0.84	0.61	0.83	2.29	66811	8164	60	0	34	0	0	logfile
✔	5XWY	6777	2023-07-05	2017-06-30	3.2	3.25	—	3.2	0.008	1.18	1.0	0.06	12.95	0.00	2.263	3.64	0.87	7.6	92.3	0.1	-5.96	0.69	0.78	3.96	3.2	0.003	0.72	0.0	0.04	16.42	0.00	2.105	11.55	0.29	7.2	92.8	0.0	-0.21	1.41	0.77	0.87	3.06	10493	1117	2	51	0	0	0	logfile
✔	7o7S	12755	2023-07-18	2021-04-13	4.3	4.69	—	4.4	0.009	1.28	7.0	0.07	16.80	0.02	1.857	21.65	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.92	0.0	0.05	14.96	0.01	2.066	26.19	0.00	13.7	86.2	0.1	-3.99	2.51	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	8FWS	29517	2023-07-07	2023-01-23	3.23	3.47	3.26	3.5	0.012	1.62	0.0	0.12	17.38	0.01	2.250	4.96	0.55	8.5	91.1	0.4	-5.96	0.65	0.74	3.06	3.5	0.003	0.70	0.0	0.04	17.42	0.00	2.120	10.33	0.41	6.5	93.1	0.4	-1.23	1.17	0.73	0.82	2.44	14416	1680	14	0	46	0	0	logfile
✔	6GTG	0065	2023-07-06	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	14.80	0.01	2.051	6.65	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.003	0.64	0.0	0.04	16.96	0.00	2.037	14.30	0.17	10.4	89.6	0.0	-3.36	1.14	0.69	0.76	2.10	12538	1298	8	91	4	3	0	logfile
✔	7o0Z	12684	2023-07-04	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.76	0.0	0.04	15.96	0.00	2.141	14.44	0.00	5.7	94.3	0.0	-0.01	1.19	0.74	0.80	1.31	8730	1142	4	0	0	0	0	logfile

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