Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GX5	0077	2022-11-29	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.005	0.77	0.0	0.05	17.37	0.00	2.112	7.56	0.82	5.4	94.6	0.0	-2.84	0.66	0.83	0.86	4.48	2133	282	3	0	0	0	0	logfile
✔	7E0F	30931	2022-11-29	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.40	0.81	3.91	2022	294	6	0	0	0	0	logfile
✔	6HRF	0260	2022-11-29	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	7JVA	22497	2022-11-29	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.50	0.0	0.09	10.05	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.003	0.72	0.0	0.04	14.65	0.00	2.169	9.91	0.61	3.6	96.4	0.0	-0.01	0.70	0.85	0.82	2.55	3248	420	4	0	3	0	0	logfile
✔	7JZM	22533	2022-11-29	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	14.47	0.00	2.187	8.88	0.00	2.8	97.2	0.0	0.24	1.24	0.76	0.79	3.02	2033	258	3	0	3	0	0	logfile
✔	7PY2	13708	2022-11-29	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	7RL4	24514	2022-11-29	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4620	680	20	0	0	0	0	logfile
✔	7JZU	22574	2022-11-29	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	5Lii	4053	2022-11-29	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	43.00	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	4.0	0.003	0.91	0.0	0.04	15.81	0.01	2.277	10.79	1.41	12.8	86.5	0.7	-3.88	0.95	0.55	0.65	1.14	3098	433	1	0	0	0	0	logfile
✔	7JV2	22491	2022-11-29	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.005	0.81	0.0	0.04	14.94	0.00	2.223	15.46	0.44	6.9	93.1	0.0	-1.20	1.29	0.70	0.77	3.82	2151	282	3	0	0	0	0	logfile
✔	6L4S	0833	2022-11-29	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	7XH8	33191	2022-11-29	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.87	0.0	0.04	15.24	0.01	2.176	19.59	3.22	6.5	93.5	0.0	-0.91	2.01	0.67	0.74	1.72	3161	404	3	0	0	0	0	logfile
✔	1oED	1044	2022-11-29	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	225.04	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	7K45	22660	2022-11-29	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.003	0.65	0.0	0.05	13.70	0.00	2.216	8.84	0.40	2.2	97.8	0.0	0.33	1.30	0.80	0.80	2.42	3038	419	4	0	2	0	0	logfile
✔	5MSH	3565	2022-11-29	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.19	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.003	0.75	0.0	0.05	12.94	0.00	2.123	14.42	0.00	7.3	92.5	0.2	-0.94	2.69	0.04	0.15	—	4287	551	2	0	0	0	0	logfile
✔	5MS1	3562	2022-11-29	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.005	0.73	0.0	0.05	13.10	0.00	2.107	11.88	0.00	4.9	95.1	0.0	-0.60	1.53	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	7US9	26729	2022-11-29	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.94	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.65	0.0	0.07	12.21	0.01	2.268	7.40	0.00	3.1	96.9	0.0	-0.01	1.47	0.61	0.77	3.67	1127	145	3	0	4	0	0	logfile
✔	6ZRF	11380	2022-11-29	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.003	0.73	0.0	0.04	14.44	0.00	2.284	18.31	0.42	10.6	89.4	0.0	-5.84	0.52	0.69	0.81	3.45	2220	300	12	0	0	0	0	logfile
✔	6F1V	4170	2022-11-29	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5164	628	2	0	0	0	0	logfile
✔	6ZRQ	11382	2022-11-29	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile

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