Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KLX	0721	2021-06-03	2019-07-30	2.9	3.09	—	3.0	0.008	0.69	0.0	0.05	13.80	0.01	2.177	6.64	0.13	6.8	93.2	0.0	-3.59	0.73	0.85	4.20	3.0	0.002	0.51	0.0	0.04	15.93	0.00	2.192	6.81	1.79	5.1	94.9	0.0	-0.86	1.18	0.75	0.86	3.80	20055	2576	14	0	14	0	0	logfile
✔	5X8R	6710	2021-06-05	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.03	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.7	0.006	0.84	0.0	0.04	16.33	0.01	2.049	21.28	1.38	13.7	85.9	0.3	-2.40	2.02	0.81	0.84	1.10	55412	2969	26	1480	0	0	0	logfile
✔	5WC3	8795	2021-06-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.90	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	3.5	0.003	0.64	0.0	0.05	11.99	0.00	2.159	7.13	0.00	10.2	89.1	0.7	-1.80	1.61	0.77	0.73	1.39	65880	4170	30	0	0	0	33390	logfile
✔	5oAF	3773	2021-06-02	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.21	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.69	0.0	0.04	12.93	0.00	2.150	13.73	0.05	4.7	95.2	0.1	-0.43	3.59	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	5Z10	6865	2021-06-03	2017-12-22	3.97	4.10	—	4.0	0.006	1.05	0.0	0.06	15.59	0.01	2.234	6.44	0.79	8.0	92.0	0.0	-4.80	0.68	0.77	1.45	4.0	0.004	0.78	0.0	0.04	16.54	0.00	2.126	12.94	0.45	6.2	93.8	0.0	-0.17	0.64	0.67	0.74	1.15	29142	3912	3	0	0	0	0	logfile
✔	6BQ1	7129	2021-06-04	2017-11-27	3.6	3.71	—	3.6	0.007	0.98	6.0	0.05	9.08	0.01	1.899	27.42	0.11	5.2	94.8	0.0	-3.86	0.60	0.49	1.40	3.6	0.004	0.70	0.0	0.04	14.79	0.01	2.160	13.40	0.40	4.6	95.4	0.0	0.58	2.06	0.73	0.70	1.02	37163	4050	8	0	955	0	0	logfile
✔	6SPE	10283	2021-06-05	2019-09-01	3.6	3.80	—	3.6	0.007	0.85	0.0	0.04	15.30	0.01	2.277	3.97	0.10	8.4	91.6	0.0	-4.99	0.88	0.84	2.15	3.6	0.007	0.77	0.0	0.04	16.21	0.01	2.075	13.22	1.24	9.2	90.8	0.0	-1.98	0.69	0.89	0.85	1.47	51429	2392	21	1526	0	0	0	logfile
✔	6QPW	4616	2021-06-01	2019-02-15	3.3	3.57	—	3.6	0.005	0.99	0.0	0.06	16.01	0.01	2.122	5.83	0.14	5.0	95.0	0.0	-3.55	0.70	0.74	3.06	3.6	0.004	0.70	0.0	0.04	17.92	0.00	2.053	13.06	0.41	5.8	94.2	0.0	-0.96	1.39	0.73	0.78	2.70	6784	839	6	0	4	0	0	logfile
✔	5BK4	9400	2021-06-05	2017-09-12	3.9	4.14	—	4.1	0.008	1.25	0.0	0.06	14.44	0.01	2.234	5.14	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	4.0	0.003	0.79	0.0	0.04	16.91	0.01	2.078	10.05	0.41	9.3	90.7	0.0	-1.40	0.97	0.81	0.80	1.41	62482	7636	22	120	8	0	0	logfile
✘	6QLE	4580	2021-06-02	2019-01-31	3.55	3.69	—	3.6	0.005	0.84	0.0	0.05	14.61	0.01	2.282	3.37	0.27	5.4	94.6	0.1	-3.18	0.73	0.77	1.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18162	2350	11	0	65	0	0	logfile
✔	6U9G	20698	2021-06-02	2019-09-08	3.98	4.04	—	4.0	0.005	1.00	0.0	0.06	9.07	0.00	2.228	5.61	0.00	12.3	87.7	0.0	-4.65	0.78	0.80	2.19	4.0	0.003	0.65	0.0	0.05	15.19	0.00	2.127	10.19	0.36	9.1	90.9	0.0	-2.46	2.51	0.78	0.80	1.40	18219	2355	6	0	0	0	0	logfile
✔	6QM7	4590	2021-06-05	2019-02-01	2.8	2.94	—	2.9	0.013	1.87	9.0	0.10	18.58	0.01	2.155	5.26	11.11	3.9	95.7	0.3	-2.65	0.80	0.90	3.81	2.9	0.004	0.58	0.0	0.04	18.08	0.00	2.115	9.76	3.17	2.0	98.0	0.1	1.16	1.62	0.79	0.88	3.42	49518	6350	58	0	2	334	0	logfile
✔	5MMJ	3532	2021-06-05	2016-12-10	3.6	3.88	—	3.6	0.008	1.16	0.0	0.05	16.66	0.01	1.774	10.55	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.70	0.0	0.04	16.40	0.01	1.359	19.33	0.71	5.3	94.6	0.1	-0.80	1.62	0.91	0.85	1.07	55315	2806	31	1484	359	0	0	logfile
✔	6Ji1	9832	2021-06-02	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.36	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.003	0.77	0.0	0.04	13.16	0.01	2.197	9.11	0.00	6.6	92.8	0.7	-0.63	0.96	0.58	0.69	—	13992	1848	4	0	0	0	0	logfile
✔	6LHT	0897	2021-06-02	2019-12-10	3.67	3.78	—	3.7	0.007	1.13	4.0	0.07	15.34	0.01	1.810	9.36	2.05	6.7	92.7	0.5	-4.42	0.44	0.82	2.88	3.7	0.005	0.81	0.0	0.05	16.47	0.01	2.062	12.33	0.60	9.1	90.7	0.2	-1.75	0.70	0.46	0.83	2.79	10754	1329	12	0	5	0	0	logfile
✔	6H3N	0136	2021-06-03	2018-07-19	3.25	3.45	—	3.4	0.015	1.53	0.0	0.07	10.78	0.01	2.457	1.23	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.003	0.60	0.0	0.04	15.07	0.00	2.013	5.97	0.13	4.1	95.9	0.0	-0.37	1.47	0.73	0.78	3.94	29319	1881	3	0	0	0	14388	logfile
✔	6QNo	4598	2021-06-02	2019-02-11	4.38	4.65	—	4.4	0.010	1.25	0.0	0.07	11.68	0.01	2.227	11.85	1.65	11.6	88.4	0.0	-3.96	0.80	0.75	—	4.4	0.004	0.76	0.0	0.04	12.51	0.00	2.040	18.07	0.26	8.7	91.3	0.0	-1.36	0.88	0.80	0.74	—	10429	1332	6	0	3	0	0	logfile
✔	6E9Z	9021	2021-06-04	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.16	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.61	0.0	0.03	16.06	0.00	1.890	8.31	0.31	2.9	97.1	0.0	2.85	1.61	0.58	0.81	1.32	32652	2025	9	0	0	0	16830	logfile
✔	6QM8	4591	2021-06-05	2019-02-01	3.3	3.34	—	3.3	0.013	1.90	6.0	0.10	18.73	0.01	2.250	4.59	11.34	7.3	91.7	0.9	-4.29	0.78	0.86	3.07	3.3	0.004	0.65	0.0	0.04	17.42	0.00	2.043	11.65	0.34	2.4	97.6	0.0	0.57	1.30	0.78	0.85	2.51	49124	6350	28	0	0	0	0	logfile
✔	5H64	6668	2021-06-05	2016-11-10	4.4	3.65	—	3.4	0.011	1.57	0.0	0.07	11.97	0.01	1.144	69.67	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	3.4	0.011	0.98	0.0	0.05	12.96	0.01	2.064	26.73	0.57	13.2	85.9	0.9	-2.21	1.10	0.85	0.71	—	45252	6430	6	0	0	0	0	logfile

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