Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6WR4	21876	2022-07-03	2020-04-29	2.9	3.02	—	3.0	0.008	1.27	3.0	0.06	12.84	0.01	1.321	4.36	5.53	5.2	94.4	0.4	-6.12	0.65	0.71	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11934	1410	6	0	6	0	0	logfile
✔	6L48	0832	2022-07-03	2019-10-16	3.5	3.71	—	3.7	0.003	0.76	2.0	0.05	12.13	0.01	2.217	10.17	2.45	6.6	93.4	0.0	-3.38	0.64	0.74	1.87	3.7	0.018	1.66	0.0	0.05	16.12	0.01	2.202	12.04	0.46	5.9	94.1	0.0	-0.42	0.70	0.66	0.72	1.72	6528	794	4	0	2	0	0	logfile
✔	6LR0	0956	2022-07-03	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.46	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	3.5	0.005	0.86	1.0	0.04	16.59	0.01	2.184	10.45	0.19	7.4	92.6	0.0	-3.47	1.38	0.48	0.72	1.38	9587	1232	1	0	0	0	0	logfile
✔	6XQo	22291	2022-07-03	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.004	0.63	0.0	0.04	16.63	0.00	2.191	10.65	0.70	2.6	97.4	0.0	0.73	1.25	0.78	0.78	1.70	4301	560	4	0	4	0	0	logfile
✔	6WUT	21918	2022-07-03	2020-05-05	3.0	3.08	—	3.1	0.008	0.89	0.0	0.05	13.93	0.01	2.253	3.66	5.79	6.2	93.8	0.0	-4.07	0.70	0.82	3.81	3.0	0.003	0.61	0.0	0.04	15.65	0.00	2.147	5.85	3.19	3.9	96.1	0.0	-0.04	4.28	0.69	0.83	3.21	8218	1087	3	0	0	0	0	logfile
✔	6X4S	22042	2022-07-03	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.87	0.00	2.114	12.07	1.17	1.8	98.2	0.0	4.20	1.53	0.72	0.76	1.05	5373	706	9	0	1	0	0	logfile
✔	7C8D	30305	2022-07-03	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.11	5.90	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.65	0.0	0.04	17.82	0.00	2.096	10.00	3.69	4.6	95.4	0.0	0.12	1.10	0.72	0.78	2.32	6359	792	3	0	1	0	0	logfile
✔	6W62	21551	2022-07-03	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.36	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.004	0.80	0.0	0.05	16.93	0.01	2.106	18.20	0.59	10.4	89.6	0.0	-1.85	1.21	0.72	0.68	0.37	7387	910	2	24	0	0	0	logfile
✔	6VRC	21367	2022-07-03	2020-02-07	3.2	3.32	—	3.3	0.010	1.27	2.0	0.08	15.90	0.01	2.170	11.64	3.70	7.7	92.3	0.0	-4.83	0.79	0.82	2.87	3.3	0.003	0.64	0.0	0.04	17.08	0.00	2.149	6.25	0.42	5.6	94.4	0.0	-0.67	0.89	0.80	0.85	2.09	9429	1007	2	51	0	0	0	logfile
✔	6WCB	21605	2022-07-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	6V4U	21048	2022-07-03	2019-12-01	3.8	4.31	—	4.1	0.002	0.47	0.0	0.04	9.64	0.00	2.273	4.54	0.00	6.1	93.9	0.0	-3.58	0.73	0.61	1.20	4.1	0.003	0.72	0.0	0.04	13.40	0.01	2.190	11.62	0.20	11.9	88.1	0.0	-1.59	0.78	0.76	0.67	1.58	7074	1106	3	0	0	0	0	logfile
✔	7CAH	30331	2022-07-02	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.97	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	16.00	0.74	12.6	87.4	0.0	-3.53	0.55	0.70	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	6LXE	30006	2022-07-03	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	17.23	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.80	0.0	0.04	14.68	0.01	2.206	22.77	0.00	9.7	90.3	0.0	-1.93	1.69	0.85	0.71	—	6519	813	4	0	2	0	0	logfile
✔	6LXD	30005	2022-07-04	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.239	15.47	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.77	0.0	0.04	15.09	0.00	2.121	19.79	0.58	9.2	90.8	0.0	-1.41	0.67	0.88	0.79	1.02	9435	963	5	72	2	0	0	logfile
✔	6W5C	21541	2022-07-03	2020-03-13	2.9	2.92	—	3.2	0.004	0.64	0.0	0.04	16.12	0.00	2.103	8.73	0.85	7.4	92.4	0.2	-1.44	0.84	0.82	4.35	3.2	0.003	0.58	0.0	0.04	17.98	0.00	2.053	11.40	1.94	7.0	93.0	0.0	-0.10	1.16	0.83	0.82	3.53	10183	1023	5	105	0	0	0	logfile
✔	6R81	4749	2022-07-03	2019-03-30	3.9	4.63	—	4.4	0.011	1.50	6.0	0.07	16.43	0.01	1.538	14.26	1.25	11.5	88.1	0.4	-5.27	0.71	0.82	1.01	4.4	0.004	0.88	0.0	0.04	17.91	0.00	2.027	15.31	0.83	9.8	90.2	0.0	-1.74	2.23	0.69	0.80	1.05	8861	1141	4	0	4	0	0	logfile
✔	6REV	4858	2022-07-04	2019-04-12	3.8	3.81	—	3.8	0.006	0.87	0.0	0.05	11.71	0.01	2.117	2.65	0.00	5.6	94.4	0.0	-5.13	0.82	0.85	3.29	3.8	0.004	0.65	0.0	0.05	14.89	0.00	1.929	8.58	0.45	5.3	94.7	0.0	-1.43	2.10	0.82	0.87	2.52	14407	1821	9	2	4	0	0	logfile
✔	6TA3	10421	2022-07-03	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.008	1.20	1.0	0.05	17.85	0.01	1.307	34.27	0.00	3.2	96.8	0.0	-0.17	2.41	0.77	0.73	0.34	9491	1201	6	0	5	0	0	logfile
✔	7BZ2	30249	2022-07-03	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	14.75	0.00	2.101	12.42	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.004	0.70	0.0	0.04	16.64	0.01	2.106	11.93	1.23	7.4	92.6	0.0	-2.73	1.58	0.72	0.78	1.22	7393	978	5	0	1	0	0	logfile
✔	6W64	21552	2022-07-03	2020-03-16	3.9	4.06	—	4.0	0.003	0.58	0.0	0.04	13.75	0.00	2.196	9.73	1.29	7.0	92.9	0.1	0.30	0.74	0.70	0.86	4.0	0.004	0.75	0.0	0.04	18.16	0.01	2.143	18.60	0.39	8.6	91.4	0.0	-0.67	0.94	0.75	0.72	1.10	8505	928	3	56	0	0	0	logfile

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