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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6N24 | 9322 | 2021-03-20 | 2018-11-12 | 3.0 | 3.88 | — | 3.7 | 0.007 | 0.78 | 0.0 | 0.05 | 9.04 | 0.01 | 2.332 | 3.64 | 0.29 | 3.6 | 96.4 | 0.0 | -6.07 | 0.73 | 0.84 | 3.71 | 3.8 | 0.005 | 0.63 | 0.0 | 0.04 | 11.07 | 0.00 | 2.182 | 7.13 | 0.14 | 2.7 | 97.3 | 0.0 | 0.30 | 2.30 | 0.67 | 0.78 | 3.07 | 12643 | 1530 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FQ8 | 4299 | 2021-03-20 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.99 | 0.01 | 2.252 | 8.40 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.007 | 0.87 | 0.0 | 0.05 | 31.22 | 0.01 | 1.897 | 44.12 | 0.00 | 5.4 | 94.6 | 0.0 | -0.46 | 1.14 | 0.87 | 0.78 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 5ZDH | 6917 | 2021-03-20 | 2018-02-23 | 3.2 | 3.35 | — | 3.3 | 0.016 | 1.35 | 0.0 | 0.07 | 10.62 | 0.01 | 1.598 | 24.51 | 1.42 | 6.2 | 92.2 | 1.6 | -4.98 | 0.75 | 0.75 | 2.34 | 3.3 | 0.004 | 0.80 | 0.0 | 0.05 | 13.29 | 0.01 | 2.101 | 11.18 | 0.01 | 6.3 | 92.9 | 0.7 | -1.28 | 0.76 | 0.74 | 0.80 | 1.69 | 66045 | 8715 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 5XNo | 6744 | 2021-03-28 | 2017-05-23 | 3.5 | 3.75 | — | 3.6 | 0.009 | 1.53 | 0.0 | 0.06 | 15.59 | 0.02 | 1.208 | 9.70 | 0.00 | 4.1 | 95.9 | 0.0 | -2.61 | 0.60 | 0.79 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✔ | 5FLX | 3221 | 2021-03-21 | 2015-10-28 | 3.9 | 4.33 | — | 4.3 | 0.003 | 0.71 | 3.0 | 0.05 | 13.54 | 0.00 | 0.894 | 15.82 | 0.19 | 6.8 | 92.6 | 0.6 | -2.97 | 0.42 | 0.58 | 0.37 | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 15.97 | 0.01 | 1.851 | 22.98 | 0.10 | 9.5 | 90.0 | 0.5 | -1.73 | 1.93 | 0.48 | 0.81 | 0.80 | 80592 | 4810 | 40 | 1972 | 76 | 0 | 0 | logfile |
✔ | 5FJ9 | 3179 | 2021-03-22 | 2015-10-06 | 4.6 | 4.67 | — | 4.6 | 0.004 | 1.21 | 0.0 | 0.05 | 12.45 | 0.00 | 1.842 | 12.80 | 4.04 | 16.0 | 82.8 | 1.1 | -4.61 | 0.80 | 0.72 | — | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 13.51 | 0.01 | 1.882 | 18.04 | 0.00 | 13.2 | 85.8 | 1.0 | -2.14 | 2.61 | 0.83 | 0.78 | — | 38680 | 4845 | 22 | 0 | 41 | 0 | 0 | logfile |
✔ | 5H1S | 9572 | 2021-03-21 | 2016-10-11 | 3.5 | 3.54 | — | 3.5 | 0.010 | 1.06 | 1.0 | 0.07 | 19.14 | 0.01 | 1.028 | 46.10 | 3.21 | 16.7 | 81.7 | 1.6 | -4.90 | 0.78 | 0.77 | 1.92 | 3.5 | 0.006 | 0.82 | 0.0 | 0.04 | 17.94 | 0.01 | 1.925 | 15.05 | 0.04 | 12.7 | 87.0 | 0.3 | -2.82 | 0.70 | 0.79 | 0.83 | 1.96 | 90825 | 3276 | 32 | 3018 | 0 | 0 | 0 | logfile |
✔ | 6N9U | 0379 | 2021-03-20 | 2018-12-04 | 3.7 | 3.80 | — | 3.7 | 0.007 | 0.84 | 0.0 | 0.05 | 12.73 | 0.01 | 2.205 | 3.66 | 0.34 | 5.3 | 94.7 | 0.0 | -4.67 | 0.75 | 0.82 | 3.31 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.00 | 0.00 | 2.057 | 6.86 | 0.00 | 3.5 | 96.5 | 0.0 | -1.48 | 1.15 | 0.77 | 0.83 | 2.74 | 8822 | 1063 | 7 | 18 | 4 | 0 | 0 | logfile |
✔ | 5FJ8 | 3178 | 2021-03-22 | 2015-10-06 | 3.9 | 3.97 | — | 4.0 | 0.004 | 1.21 | 0.0 | 0.04 | 13.54 | 0.00 | 2.035 | 13.70 | 4.05 | 16.0 | 82.9 | 1.1 | -4.73 | 0.70 | 0.69 | 0.95 | 3.9 | 0.004 | 0.90 | 0.0 | 0.05 | 14.67 | 0.01 | 1.880 | 14.33 | 0.02 | 13.6 | 85.2 | 1.2 | -2.57 | 1.52 | 0.76 | 0.76 | 1.45 | 39284 | 4804 | 25 | 47 | 41 | 0 | 0 | logfile |
✔ | 6RKS | 4909 | 2021-03-20 | 2019-04-30 | 4.0 | 4.16 | — | 4.1 | 0.020 | 1.94 | 0.0 | 0.16 | 14.65 | 0.01 | 2.272 | 5.23 | 0.00 | 8.4 | 91.6 | 0.0 | -2.91 | 0.81 | 0.85 | — | 4.1 | 0.005 | 1.52 | 0.0 | 0.04 | 16.01 | 0.00 | 2.052 | 5.88 | 0.00 | 6.1 | 93.9 | 0.0 | 0.20 | 0.75 | 0.82 | 0.85 | — | 12572 | 1416 | 9 | 64 | 1 | 0 | 0 | logfile |
✔ | 6BE1 | 7088 | 2021-03-22 | 2017-10-24 | 4.31 | 4.45 | — | 4.3 | 0.006 | 1.11 | 0.0 | 0.06 | 12.53 | 0.01 | 2.301 | 4.22 | 1.66 | 7.1 | 92.9 | 0.0 | -4.36 | 0.76 | 0.77 | — | 4.3 | 0.003 | 0.76 | 0.0 | 0.05 | 12.41 | 0.00 | 2.190 | 10.21 | 0.00 | 5.5 | 94.5 | 0.0 | -1.40 | 0.91 | 0.78 | 0.82 | — | 16910 | 1995 | 15 | 0 | 41 | 11 | 0 | logfile |
✔ | 5XXB | 6778 | 2021-03-23 | 2017-07-03 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.07 | 5.0 | 0.09 | 17.43 | 0.00 | 1.261 | 4.86 | 4.74 | 7.1 | 91.3 | 1.5 | -3.54 | 0.65 | 0.77 | 2.19 | 3.2 | 0.008 | 0.76 | 0.0 | 0.04 | 15.85 | 0.01 | 1.959 | 9.11 | 0.06 | 7.1 | 92.4 | 0.6 | -1.21 | 0.67 | 0.81 | 0.85 | 2.47 | 121433 | 6215 | 44 | 3352 | 0 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2021-03-23 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 24.85 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.003 | 0.52 | 0.0 | 0.03 | 11.14 | 0.00 | 1.989 | 8.91 | 0.00 | 1.3 | 98.7 | 0.0 | 2.94 | 1.56 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6FQ6 | 4298 | 2021-03-20 | 2018-02-13 | 4.0 | 4.69 | — | 4.1 | 0.009 | 1.10 | 0.0 | 0.07 | 26.79 | 0.01 | 2.261 | 7.97 | 0.32 | 2.3 | 97.7 | 0.0 | -0.84 | 0.84 | 0.73 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.04 | 29.10 | 0.01 | 2.024 | 25.21 | 0.00 | 3.8 | 96.2 | 0.0 | -0.18 | 1.73 | 0.85 | 0.76 | — | 11987 | 752 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6N23 | 9321 | 2021-03-21 | 2018-11-12 | 3.1 | 3.91 | — | 3.6 | 0.008 | 0.78 | 0.0 | 0.05 | 9.58 | 0.01 | 2.231 | 2.46 | 0.00 | 3.3 | 96.7 | 0.0 | -5.52 | 0.79 | 0.87 | 4.09 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 11.61 | 0.00 | 2.234 | 5.26 | 0.00 | 2.3 | 97.7 | 0.0 | 1.45 | 0.54 | 0.73 | 0.84 | 2.94 | 14935 | 1815 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6FQ5 | 4297 | 2021-03-20 | 2018-02-13 | 3.8 | 4.09 | — | 3.9 | 0.008 | 1.09 | 0.0 | 0.06 | 28.57 | 0.01 | 2.253 | 3.54 | 0.31 | 2.4 | 97.6 | 0.0 | -1.55 | 0.82 | 0.74 | 0.85 | 3.9 | 0.003 | 0.62 | 0.0 | 0.03 | 27.85 | 0.00 | 2.111 | 12.85 | 0.15 | 1.7 | 98.3 | 0.0 | 1.84 | 2.22 | 0.84 | 0.79 | 1.54 | 12193 | 774 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6KZ3 | 0784 | 2021-03-21 | 2019-09-23 | 3.1 | 3.29 | — | 3.2 | 0.006 | 0.68 | 0.0 | 0.05 | 13.19 | 0.00 | 2.194 | 9.64 | 0.82 | 11.2 | 88.8 | 0.0 | -4.17 | 0.82 | 0.86 | 3.00 | 3.2 | 0.003 | 0.65 | 0.0 | 0.05 | 12.91 | 0.00 | 2.097 | 7.83 | 0.00 | 9.0 | 91.0 | 0.0 | -1.48 | 0.40 | 0.81 | 0.86 | 3.14 | 20046 | 2646 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JUL | 8177 | 2021-03-24 | 2016-05-10 | 4.4 | 4.41 | — | 4.3 | 0.012 | 1.51 | 16.0 | 0.06 | 10.59 | 0.01 | 1.568 | 32.86 | 0.18 | 16.6 | 80.8 | 2.5 | -4.96 | 0.67 | 0.54 | — | 4.3 | 0.004 | 0.83 | 0.0 | 0.05 | 13.08 | 0.00 | 2.046 | 15.77 | 0.02 | 13.6 | 85.4 | 1.0 | -3.33 | 2.19 | 0.71 | 0.61 | — | 161200 | 19728 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 5XY3 | 6784 | 2021-03-22 | 2017-07-06 | 3.2 | 3.24 | — | 3.2 | 0.006 | 1.04 | 7.0 | 0.09 | 17.01 | 0.00 | 1.123 | 6.17 | 3.45 | 6.0 | 92.7 | 1.3 | -3.33 | 0.61 | 0.76 | 2.54 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 15.42 | 0.00 | 2.048 | 7.98 | 0.02 | 5.0 | 94.7 | 0.3 | -0.86 | 0.65 | 0.76 | 0.82 | 2.33 | 107145 | 5917 | 43 | 2815 | 0 | 0 | 0 | logfile |
✔ | 6N28 | 9326 | 2021-03-21 | 2018-11-12 | 2.9 | 3.06 | — | 3.1 | 0.006 | 0.78 | 0.0 | 0.05 | 9.54 | 0.01 | 2.215 | 3.56 | 0.00 | 2.4 | 97.6 | 0.0 | -3.44 | 0.75 | 0.87 | 3.66 | 3.1 | 0.004 | 0.53 | 0.0 | 0.04 | 11.45 | 0.00 | 2.183 | 6.46 | 0.00 | 2.2 | 97.8 | 0.0 | 1.27 | 1.97 | 0.76 | 0.88 | 2.99 | 13885 | 1690 | 10 | 0 | 5 | 0 | 0 | logfile |