Table showing results for March 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N24	9322	2021-03-20	2018-11-12	3.0	3.88	—	3.7	0.007	0.78	0.0	0.05	9.04	0.01	2.332	3.64	0.29	3.6	96.4	0.0	-6.07	0.73	0.84	3.71	3.8	0.005	0.63	0.0	0.04	11.07	0.00	2.182	7.13	0.14	2.7	97.3	0.0	0.30	2.30	0.67	0.78	3.07	12643	1530	5	0	0	0	0	logfile
✔	6FQ8	4299	2021-03-20	2018-02-13	4.8	6.62	—	4.8	0.008	1.16	0.0	0.07	26.99	0.01	2.252	8.40	0.16	2.3	97.7	0.0	-0.86	0.84	0.71	—	4.9	0.007	0.87	0.0	0.05	31.22	0.01	1.897	44.12	0.00	5.4	94.6	0.0	-0.46	1.14	0.87	0.78	—	11913	744	10	294	0	0	0	logfile
✔	5ZDH	6917	2021-03-20	2018-02-23	3.2	3.35	—	3.3	0.016	1.35	0.0	0.07	10.62	0.01	1.598	24.51	1.42	6.2	92.2	1.6	-4.98	0.75	0.75	2.34	3.3	0.004	0.80	0.0	0.05	13.29	0.01	2.101	11.18	0.01	6.3	92.9	0.7	-1.28	0.76	0.74	0.80	1.69	66045	8715	30	0	0	0	0	logfile
✘	5XNo	6744	2021-03-28	2017-05-23	3.5	3.75	—	3.6	0.009	1.53	0.0	0.06	15.59	0.02	1.208	9.70	0.00	4.1	95.9	0.0	-2.61	0.60	0.79	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✔	5FLX	3221	2021-03-21	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	13.54	0.00	0.894	15.82	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.004	0.75	0.0	0.04	15.97	0.01	1.851	22.98	0.10	9.5	90.0	0.5	-1.73	1.93	0.48	0.81	0.80	80592	4810	40	1972	76	0	0	logfile
✔	5FJ9	3179	2021-03-22	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	12.80	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.5	0.004	0.90	0.0	0.05	13.51	0.01	1.882	18.04	0.00	13.2	85.8	1.0	-2.14	2.61	0.83	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	5H1S	9572	2021-03-21	2016-10-11	3.5	3.54	—	3.5	0.010	1.06	1.0	0.07	19.14	0.01	1.028	46.10	3.21	16.7	81.7	1.6	-4.90	0.78	0.77	1.92	3.5	0.006	0.82	0.0	0.04	17.94	0.01	1.925	15.05	0.04	12.7	87.0	0.3	-2.82	0.70	0.79	0.83	1.96	90825	3276	32	3018	0	0	0	logfile
✔	6N9U	0379	2021-03-20	2018-12-04	3.7	3.80	—	3.7	0.007	0.84	0.0	0.05	12.73	0.01	2.205	3.66	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	3.7	0.003	0.60	0.0	0.04	15.00	0.00	2.057	6.86	0.00	3.5	96.5	0.0	-1.48	1.15	0.77	0.83	2.74	8822	1063	7	18	4	0	0	logfile
✔	5FJ8	3178	2021-03-22	2015-10-06	3.9	3.97	—	4.0	0.004	1.21	0.0	0.04	13.54	0.00	2.035	13.70	4.05	16.0	82.9	1.1	-4.73	0.70	0.69	0.95	3.9	0.004	0.90	0.0	0.05	14.67	0.01	1.880	14.33	0.02	13.6	85.2	1.2	-2.57	1.52	0.76	0.76	1.45	39284	4804	25	47	41	0	0	logfile
✔	6RKS	4909	2021-03-20	2019-04-30	4.0	4.16	—	4.1	0.020	1.94	0.0	0.16	14.65	0.01	2.272	5.23	0.00	8.4	91.6	0.0	-2.91	0.81	0.85	—	4.1	0.005	1.52	0.0	0.04	16.01	0.00	2.052	5.88	0.00	6.1	93.9	0.0	0.20	0.75	0.82	0.85	—	12572	1416	9	64	1	0	0	logfile
✔	6BE1	7088	2021-03-22	2017-10-24	4.31	4.45	—	4.3	0.006	1.11	0.0	0.06	12.53	0.01	2.301	4.22	1.66	7.1	92.9	0.0	-4.36	0.76	0.77	—	4.3	0.003	0.76	0.0	0.05	12.41	0.00	2.190	10.21	0.00	5.5	94.5	0.0	-1.40	0.91	0.78	0.82	—	16910	1995	15	0	41	11	0	logfile
✔	5XXB	6778	2021-03-23	2017-07-03	3.17	3.22	—	3.2	0.006	1.07	5.0	0.09	17.43	0.00	1.261	4.86	4.74	7.1	91.3	1.5	-3.54	0.65	0.77	2.19	3.2	0.008	0.76	0.0	0.04	15.85	0.01	1.959	9.11	0.06	7.1	92.4	0.6	-1.21	0.67	0.81	0.85	2.47	121433	6215	44	3352	0	0	0	logfile
✔	6E9Y	9020	2021-03-23	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	24.85	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.52	0.0	0.03	11.14	0.00	1.989	8.91	0.00	1.3	98.7	0.0	2.94	1.56	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6FQ6	4298	2021-03-20	2018-02-13	4.0	4.69	—	4.1	0.009	1.10	0.0	0.07	26.79	0.01	2.261	7.97	0.32	2.3	97.7	0.0	-0.84	0.84	0.73	—	4.1	0.005	0.73	0.0	0.04	29.10	0.01	2.024	25.21	0.00	3.8	96.2	0.0	-0.18	1.73	0.85	0.76	—	11987	752	10	294	0	0	0	logfile
✔	6N23	9321	2021-03-21	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.231	2.46	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.003	0.54	0.0	0.04	11.61	0.00	2.234	5.26	0.00	2.3	97.7	0.0	1.45	0.54	0.73	0.84	2.94	14935	1815	10	0	5	0	0	logfile
✔	6FQ5	4297	2021-03-20	2018-02-13	3.8	4.09	—	3.9	0.008	1.09	0.0	0.06	28.57	0.01	2.253	3.54	0.31	2.4	97.6	0.0	-1.55	0.82	0.74	0.85	3.9	0.003	0.62	0.0	0.03	27.85	0.00	2.111	12.85	0.15	1.7	98.3	0.0	1.84	2.22	0.84	0.79	1.54	12193	774	10	294	0	0	0	logfile
✔	6KZ3	0784	2021-03-21	2019-09-23	3.1	3.29	—	3.2	0.006	0.68	0.0	0.05	13.19	0.00	2.194	9.64	0.82	11.2	88.8	0.0	-4.17	0.82	0.86	3.00	3.2	0.003	0.65	0.0	0.05	12.91	0.00	2.097	7.83	0.00	9.0	91.0	0.0	-1.48	0.40	0.81	0.86	3.14	20046	2646	6	0	0	0	0	logfile
✔	5JUL	8177	2021-03-24	2016-05-10	4.4	4.41	—	4.3	0.012	1.51	16.0	0.06	10.59	0.01	1.568	32.86	0.18	16.6	80.8	2.5	-4.96	0.67	0.54	—	4.3	0.004	0.83	0.0	0.05	13.08	0.00	2.046	15.77	0.02	13.6	85.4	1.0	-3.33	2.19	0.71	0.61	—	161200	19728	32	0	16	0	0	logfile
✔	5XY3	6784	2021-03-22	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.17	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.003	0.61	0.0	0.03	15.42	0.00	2.048	7.98	0.02	5.0	94.7	0.3	-0.86	0.65	0.76	0.82	2.33	107145	5917	43	2815	0	0	0	logfile
✔	6N28	9326	2021-03-21	2018-11-12	2.9	3.06	—	3.1	0.006	0.78	0.0	0.05	9.54	0.01	2.215	3.56	0.00	2.4	97.6	0.0	-3.44	0.75	0.87	3.66	3.1	0.004	0.53	0.0	0.04	11.45	0.00	2.183	6.46	0.00	2.2	97.8	0.0	1.27	1.97	0.76	0.88	2.99	13885	1690	10	0	5	0	0	logfile

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