Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V1N	31628	2023-04-25	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.52	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.2	0.003	0.70	0.0	0.05	18.12	0.00	2.097	12.66	0.43	11.0	88.8	0.2	-2.89	0.64	0.65	0.74	1.83	19156	2403	2	0	0	0	0	logfile
✔	7LB8	23251	2023-04-21	2021-01-07	3.4	3.48	—	3.5	0.002	0.62	1.0	0.04	14.95	0.00	2.093	9.76	2.66	4.7	95.0	0.3	-1.98	0.58	0.72	1.54	3.5	0.005	0.79	0.0	0.04	16.35	0.01	2.176	12.46	0.38	5.3	94.6	0.1	-0.21	0.95	0.66	0.81	1.67	10439	1405	4	0	0	0	0	logfile
✔	6PWE	20506	2023-04-22	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.004	0.65	0.0	0.03	28.43	0.00	2.085	11.70	0.65	4.3	95.6	0.1	-1.43	1.44	0.70	0.80	1.58	11923	744	10	294	0	0	0	logfile
✔	7SCN	25039	2023-04-24	2021-09-28	3.02	3.22	—	3.2	0.022	1.79	0.0	0.11	10.47	0.01	1.142	0.92	0.16	1.6	98.4	0.0	1.22	0.76	0.83	4.32	3.2	0.003	0.62	0.0	0.04	14.79	0.00	2.159	6.39	0.27	2.0	98.0	0.0	1.08	0.69	0.76	0.86	3.40	17145	2145	15	0	15	0	0	logfile
✔	6UiV	20788	2023-04-26	2019-10-01	3.3	4.06	—	3.6	0.007	0.89	0.0	0.06	13.35	0.01	2.218	7.15	1.13	4.6	95.4	0.0	-3.51	0.69	0.81	2.55	3.6	0.004	0.60	0.0	0.04	14.46	0.00	2.225	9.46	0.21	3.5	96.5	0.0	2.72	0.56	0.70	0.82	2.09	22902	3157	11	0	0	0	0	logfile
✔	6VSJ	21377	2023-04-28	2020-02-11	3.94	4.47	—	4.3	0.008	1.02	0.0	0.06	15.04	0.01	2.212	9.41	0.95	9.6	90.3	0.1	-4.11	0.83	0.81	1.80	4.3	0.005	0.76	0.0	0.05	16.03	0.00	2.114	18.30	0.41	9.7	90.3	0.0	-2.26	1.61	0.83	0.80	1.56	28752	3687	12	0	12	0	0	logfile
✔	7U2M	26315	2023-04-23	2022-02-24	2.9	3.22	—	3.3	0.008	0.85	0.0	0.05	8.96	0.00	2.059	29.73	0.00	5.3	94.7	0.0	-3.83	0.57	0.86	5.01	3.1	0.003	0.76	0.0	0.05	15.86	0.00	2.165	11.30	2.62	3.9	96.1	0.0	-0.36	0.84	0.55	0.85	3.54	14155	1730	15	0	20	0	0	logfile
✔	7CGE	30355	2023-04-24	2020-07-01	2.9	3.03	—	3.0	0.011	1.49	0.0	0.06	18.72	0.01	2.198	4.85	0.95	11.2	88.2	0.6	-5.74	0.77	0.86	2.99	3.0	0.003	0.70	0.0	0.04	17.29	0.00	2.158	6.91	2.38	9.3	90.6	0.1	-0.52	0.59	0.78	0.88	2.18	16406	2092	16	0	12	0	0	logfile
✔	7LAB	23248	2023-04-23	2021-01-06	2.97	3.41	—	3.3	0.015	1.90	4.0	0.15	13.74	0.02	2.016	0.76	1.59	6.5	93.0	0.5	-1.34	0.76	0.77	3.26	3.3	0.004	0.62	0.0	0.04	14.78	0.00	1.991	5.90	1.48	5.1	94.8	0.1	-0.48	0.80	0.79	0.81	2.79	64902	4194	26	0	59	0	31607	logfile
✘	6U9W	20703	2023-04-28	2019-09-09	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26919	1686	12	3	42	0	12885	logfile
✔	6XLB	22238	2023-04-22	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.70	0.0	0.04	16.05	0.00	2.137	17.34	0.48	3.2	96.8	0.0	-0.32	0.89	0.84	0.81	1.48	11180	1380	4	0	0	0	0	logfile
✔	7LCN	23277	2023-04-24	2021-01-11	3.35	3.96	—	3.5	0.014	1.95	26.0	0.12	14.38	0.02	2.509	0.43	2.55	9.4	89.0	1.6	-2.18	0.83	0.73	2.09	3.5	0.003	0.65	0.0	0.04	14.50	0.00	1.856	7.41	0.24	7.2	92.4	0.4	-1.46	0.68	0.84	0.74	1.86	66313	4296	27	0	63	0	32245	logfile
✔	7T8X	25748	2023-04-22	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.79	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.61	0.0	0.04	14.57	0.00	2.141	7.30	0.11	3.4	96.6	0.0	0.39	0.36	0.71	0.87	2.56	8555	1126	6	0	1	0	0	logfile
✘	7A69	11667	2023-04-22	2020-08-25	3.2	3.36	—	3.3	0.014	1.06	0.0	0.18	14.34	0.00	2.042	11.79	4.42	4.7	95.2	0.1	-2.83	0.63	0.76	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12637	1596	4	0	9	0	0	logfile
✔	7KCL	22812	2023-04-21	2020-10-06	3.14	3.19	—	3.2	0.004	0.62	0.0	0.04	15.74	0.00	2.009	10.47	0.00	4.7	95.3	0.0	-0.08	0.76	0.84	2.81	3.2	0.003	0.56	0.0	0.04	17.15	0.00	1.946	11.61	0.27	4.7	95.3	0.0	-0.07	0.88	0.76	0.87	2.71	10057	1249	5	0	6	0	0	logfile
✘	6UZA	20954	2023-04-26	2019-11-14	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23284	2936	8	0	20	0	0	logfile
✔	7WHN	32505	2023-04-21	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.00	0.00	2.281	5.47	0.10	2.7	97.3	0.0	0.94	0.40	0.37	0.82	2.21	9284	1170	1	0	0	0	0	logfile
✔	7DFW	30666	2023-04-20	2020-11-10	2.69	2.93	—	3.0	0.006	0.97	0.0	0.06	14.89	0.02	2.180	10.08	0.00	4.8	95.2	0.0	-3.11	0.66	0.83	2.81	3.0	0.003	0.63	0.0	0.04	15.77	0.00	2.226	4.94	1.23	5.0	95.0	0.0	0.22	1.13	0.66	0.85	2.19	7913	957	5	0	23	0	0	logfile
✔	7SCo	25040	2023-04-24	2021-09-28	3.37	3.52	—	3.5	0.021	1.73	0.0	0.11	9.76	0.01	1.876	0.57	0.00	1.4	98.6	0.0	0.59	0.73	0.78	2.79	3.5	0.004	0.70	0.0	0.04	15.25	0.01	2.084	11.04	0.27	3.5	96.5	0.0	-0.17	0.84	0.74	0.82	2.93	17130	2157	18	0	18	0	0	logfile
✔	6PWF	20507	2023-04-23	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.91	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.003	0.65	0.0	0.04	27.03	0.00	2.125	11.76	0.11	5.0	95.0	0.0	-2.42	1.16	0.64	0.75	—	15197	1208	11	292	0	0	0	logfile

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