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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SSX | 10307 | 2024-03-10 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.1 | 0.005 | 0.69 | 0.0 | 0.05 | 16.86 | 0.00 | 2.241 | 10.87 | 4.68 | 11.9 | 88.1 | 0.0 | -5.00 | 0.75 | 0.64 | 0.85 | 4.29 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iUG | 9734 | 2024-03-16 | 2018-11-28 | 3.9 | 3.96 | — | 3.8 | 0.005 | 0.90 | 0.0 | 0.05 | 10.73 | 0.01 | 2.105 | 7.72 | 0.96 | 8.4 | 91.6 | 0.0 | -3.83 | 0.72 | 0.83 | 1.84 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 14.37 | 0.00 | 1.920 | 16.07 | 1.73 | 8.0 | 92.0 | 0.0 | -0.97 | 1.32 | 0.73 | 0.84 | 1.58 | 14585 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6ZBY | 11158 | 2024-03-21 | 2020-06-09 | 3.1 | 2.81 | — | 3.1 | 0.013 | 2.02 | 19.0 | 0.13 | 14.55 | 0.02 | 2.514 | 0.63 | 1.24 | 4.3 | 95.1 | 0.6 | -2.34 | 0.64 | 0.83 | 4.84 | 3.0 | 0.005 | 0.68 | 0.0 | 0.04 | 16.24 | 0.00 | 2.144 | 10.08 | 2.63 | 2.8 | 97.0 | 0.2 | -0.43 | 1.59 | 0.63 | 0.85 | 4.07 | 28836 | 3792 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAS | 24955 | 2024-03-15 | 2021-09-23 | 3.7 | 3.32 | — | 4.1 | 0.005 | 0.87 | 0.0 | 0.07 | 13.33 | 0.01 | 2.166 | 18.82 | 0.00 | 12.0 | 88.0 | 0.0 | -3.25 | 0.40 | 0.67 | 1.98 | 4.1 | 0.005 | 0.83 | 0.0 | 0.06 | 15.11 | 0.00 | 2.093 | 12.71 | 7.30 | 12.9 | 87.1 | 0.0 | -3.65 | 0.61 | 0.44 | 0.76 | 3.42 | 11420 | 1350 | 20 | 0 | 40 | 0 | 0 | logfile |
✔ | 6E9Z | 9021 | 2024-03-22 | 2018-08-01 | 3.4 | 3.50 | — | 3.4 | 0.011 | 0.85 | 0.0 | 0.05 | 10.27 | 0.01 | 1.132 | 13.25 | 0.00 | 4.5 | 95.1 | 0.4 | -6.29 | 0.55 | 0.77 | 3.60 | 3.5 | 0.002 | 0.62 | 0.0 | 0.03 | 15.73 | 0.00 | 1.943 | 7.92 | 0.62 | 2.5 | 97.5 | 0.0 | 2.83 | 1.90 | 0.57 | 0.82 | 1.40 | 32652 | 2025 | 9 | 0 | 0 | 0 | 16830 | logfile |
✔ | 7PZD | 13727 | 2024-03-20 | 2021-10-12 | 3.6 | 3.77 | — | 3.8 | 0.010 | 1.24 | 0.0 | 0.08 | 16.79 | 0.01 | 2.384 | 6.88 | 1.27 | 5.6 | 94.4 | 0.0 | -3.73 | 0.68 | 0.81 | 1.20 | 3.8 | 0.003 | 0.62 | 0.0 | 0.03 | 18.77 | 0.01 | 2.254 | 7.79 | 1.34 | 4.2 | 95.8 | 0.0 | 1.29 | 1.68 | 0.67 | 0.81 | 0.44 | 13644 | 1656 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJM | 7936 | 2024-03-15 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 11.49 | 0.01 | 2.069 | 3.69 | 0.00 | 4.2 | 95.8 | 0.0 | -4.16 | 0.67 | 0.84 | 3.65 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.40 | 0.00 | 1.948 | 7.24 | 1.19 | 4.1 | 95.9 | 0.0 | -0.51 | 1.25 | 0.68 | 0.86 | 2.95 | 11768 | 1488 | 12 | 0 | 8 | 4 | 0 | logfile |
✔ | 7U10 | 26273 | 2024-03-10 | 2022-02-19 | 3.0 | 3.45 | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.05 | 17.22 | 0.00 | 2.230 | 10.70 | 0.00 | 6.8 | 93.2 | 0.0 | -2.82 | 0.37 | 0.64 | 3.73 | 4.2 | 0.003 | 0.75 | 0.0 | 0.06 | 18.60 | 0.00 | 2.188 | 12.01 | 2.65 | 5.8 | 94.2 | 0.0 | -3.66 | 2.73 | 0.28 | 0.68 | 3.37 | 3429 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WL1 | 21815 | 2024-03-16 | 2020-04-17 | 4.0 | 4.02 | — | 4.0 | 0.007 | 0.81 | 0.0 | 0.05 | 7.85 | 0.00 | 2.413 | 3.17 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.71 | 0.85 | — | 4.0 | 0.003 | 0.48 | 0.0 | 0.03 | 16.55 | 0.00 | 2.272 | 7.01 | 4.66 | 0.0 | 100.0 | 0.0 | 6.35 | 0.72 | 0.72 | 0.86 | — | 14612 | 1872 | 52 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AMD | 15524 | 2024-03-15 | 2022-08-03 | 3.9 | 4.48 | — | 4.4 | 0.006 | 0.96 | 0.0 | 0.06 | 17.83 | 0.01 | 2.298 | 5.05 | 0.87 | 10.7 | 89.3 | 0.0 | -5.17 | 0.51 | 0.80 | 1.43 | 4.4 | 0.004 | 0.67 | 0.0 | 0.04 | 18.99 | 0.00 | 2.195 | 12.41 | 5.10 | 8.6 | 91.4 | 0.0 | -2.76 | 0.52 | 0.51 | 0.79 | 1.41 | 10377 | 1332 | 9 | 12 | 4 | 0 | 0 | logfile |
✔ | 6oSM | 20186 | 2024-03-10 | 2019-05-01 | 3.4 | 3.31 | — | 3.4 | 0.012 | 1.45 | 0.0 | 0.09 | 14.06 | 0.00 | 2.183 | 28.91 | 14.88 | 34.5 | 65.5 | 0.0 | -5.34 | 0.46 | 0.74 | 2.68 | 3.4 | 0.007 | 1.20 | 0.0 | 0.07 | 15.46 | 0.00 | 2.162 | 23.54 | 11.71 | 25.7 | 74.3 | 0.0 | -5.10 | 1.14 | 0.45 | 0.75 | 3.04 | 4100 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MKH | 23894 | 2024-03-15 | 2021-04-23 | 3.3 | 3.35 | — | 4.2 | 0.023 | 1.99 | 0.0 | 0.10 | 8.93 | 0.01 | 2.387 | 0.43 | 0.00 | 6.8 | 93.2 | 0.0 | -2.24 | 0.48 | 0.68 | 2.35 | 3.7 | 0.003 | 0.66 | 0.0 | 0.05 | 12.85 | 0.00 | 2.060 | 11.27 | 2.58 | 8.2 | 91.8 | 0.0 | -3.70 | 1.34 | 0.46 | 0.67 | 2.10 | 11720 | 750 | 10 | 0 | 0 | 0 | 5980 | logfile |
✔ | 6Kio | 9996 | 2024-03-16 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.25 | 0.00 | 1.970 | 12.13 | 2.04 | 7.8 | 91.8 | 0.4 | -1.24 | 1.67 | 0.65 | 0.78 | 1.27 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 7M62 | 23687 | 2024-03-10 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.003 | 0.88 | 0.0 | 0.05 | 16.43 | 0.00 | 2.174 | 23.11 | 7.04 | 19.0 | 81.0 | 0.0 | -4.61 | 2.78 | 0.57 | 0.66 | 2.74 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7U11 | 26274 | 2024-03-10 | 2022-02-19 | 3.2 | 2.77 | — | 3.4 | 0.006 | 0.73 | 0.0 | 0.06 | 17.79 | 0.00 | 2.186 | 14.68 | 2.36 | 6.0 | 94.0 | 0.0 | -2.79 | 0.29 | 0.64 | 3.31 | 3.4 | 0.004 | 0.78 | 0.0 | 0.06 | 17.99 | 0.00 | 2.209 | 10.90 | 1.31 | 8.3 | 91.7 | 0.0 | -3.51 | 0.96 | 0.34 | 0.70 | 3.20 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7JL3 | 22371 | 2024-03-22 | 2020-07-29 | 4.2 | 5.32 | — | 5.0 | 0.004 | 1.32 | 2.0 | 0.05 | 17.31 | 0.00 | 1.999 | 11.75 | 1.45 | 2.9 | 97.1 | 0.0 | 0.40 | 0.87 | 0.78 | — | 5.0 | 0.003 | 0.93 | 0.0 | 0.04 | 16.43 | 0.00 | 1.896 | 12.92 | 0.00 | 3.2 | 96.8 | 0.0 | 1.18 | 0.74 | 0.89 | 0.82 | — | 21219 | 2457 | 11 | 84 | 12 | 0 | 0 | logfile |
✔ | 7MKF | 23871 | 2024-03-15 | 2021-04-23 | 3.0 | 3.23 | — | 4.1 | 0.022 | 1.99 | 0.0 | 0.09 | 11.33 | 0.01 | 2.198 | 1.23 | 0.00 | 7.7 | 92.3 | 0.0 | -1.78 | 0.48 | 0.63 | 2.98 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 14.71 | 0.00 | 1.962 | 25.00 | 3.75 | 8.2 | 91.8 | 0.0 | -3.09 | 2.96 | 0.48 | 0.66 | 2.70 | 11370 | 730 | 10 | 0 | 0 | 0 | 5800 | logfile |
✔ | 6H5Q | 0141 | 2024-03-25 | 2018-07-25 | 3.3 | 3.43 | — | 3.4 | 0.010 | 1.14 | 0.0 | 0.06 | 11.79 | 0.01 | 1.628 | 11.72 | 1.54 | 4.0 | 96.0 | 0.0 | -4.31 | 0.46 | 0.87 | 4.00 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.04 | 0.00 | 2.157 | 10.43 | 2.26 | 3.1 | 96.9 | 0.0 | 0.60 | 0.61 | 0.49 | 0.89 | 2.74 | 46650 | 5715 | 30 | 90 | 0 | 0 | 0 | logfile |
✔ | 6M5G | 30085 | 2024-03-17 | 2020-03-10 | 3.6 | 3.74 | — | 3.6 | 0.010 | 0.82 | 0.0 | 0.05 | 13.87 | 0.00 | 1.951 | 11.79 | 9.29 | 9.4 | 90.4 | 0.2 | -3.64 | 0.74 | 0.90 | 1.98 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.10 | 0.00 | 1.988 | 9.41 | 4.01 | 4.6 | 95.3 | 0.0 | -0.89 | 1.45 | 0.73 | 0.89 | 1.70 | 17363 | 2204 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2024-03-10 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 14.90 | 0.00 | 2.443 | 8.42 | 4.88 | 14.9 | 85.1 | 0.0 | -5.73 | 1.14 | 0.31 | 0.69 | 5.16 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |