Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UW8	20919	2022-12-14	2019-11-04	4.02	4.12	—	4.0	0.005	0.90	4.0	0.05	14.81	0.01	2.173	4.55	0.00	6.4	93.6	0.0	-4.15	0.69	0.83	—	4.0	0.002	0.59	0.0	0.04	14.24	0.00	2.136	7.86	0.00	5.7	94.3	0.0	0.16	1.66	0.69	0.82	—	19640	2408	4	0	0	0	0	logfile
✔	6WHV	21677	2022-12-15	2020-04-08	4.05	4.56	—	4.4	0.007	0.85	1.0	0.09	14.94	0.01	2.076	20.04	0.33	17.3	82.6	0.1	-5.39	0.69	0.78	—	4.4	0.003	0.71	1.0	0.04	14.04	0.00	2.135	10.66	0.04	8.4	91.6	0.0	-2.30	0.58	0.69	0.78	—	23764	3170	9	0	9	0	0	logfile
✔	6M66	30114	2022-12-13	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.231	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	4.2	0.003	0.79	0.0	0.05	14.81	0.01	2.047	14.43	0.00	8.1	91.9	0.0	-1.00	1.67	0.64	0.74	—	14938	1855	7	0	0	0	0	logfile
✔	6WHX	21679	2022-12-14	2020-04-08	4.09	4.50	—	4.4	0.007	0.87	0.0	0.05	14.66	0.01	2.048	18.84	0.13	19.4	80.6	0.0	-5.50	0.59	0.70	—	4.4	0.003	0.68	0.0	0.04	13.64	0.00	2.136	10.79	0.00	8.7	91.2	0.0	-2.20	0.53	0.62	0.74	—	22925	3154	8	0	4	0	0	logfile
✔	6oZC	20224	2022-12-15	2019-05-15	3.79	4.35	—	4.2	0.022	1.83	0.0	0.11	10.38	0.01	2.303	1.22	0.00	3.1	96.2	0.7	0.38	0.79	0.82	2.11	4.2	0.004	0.74	0.0	0.04	14.06	0.00	2.084	13.37	0.35	5.4	94.5	0.1	-0.37	1.62	0.78	0.80	1.52	25821	3027	54	0	186	0	0	logfile
✔	6M5G	30085	2022-12-13	2020-03-10	3.6	3.74	—	3.6	0.010	0.82	0.0	0.05	13.87	0.00	1.951	11.79	9.29	9.4	90.4	0.2	-3.64	0.74	0.90	1.98	3.6	0.004	0.65	0.0	0.04	14.98	0.00	1.960	9.85	0.43	4.7	95.3	0.0	-0.99	1.45	0.73	0.89	1.63	17363	2204	13	0	10	0	0	logfile
✔	6Wi1	21682	2022-12-15	2020-04-08	3.62	4.11	—	3.9	0.007	0.84	0.0	0.10	13.76	0.01	2.127	13.83	0.70	14.5	85.1	0.4	-4.55	0.75	0.75	1.81	3.9	0.003	0.76	0.0	0.04	15.10	0.00	2.055	10.60	0.13	9.5	90.3	0.2	-1.37	0.49	0.77	0.81	1.34	23366	3182	12	0	16	0	0	logfile
✔	6UVR	20914	2022-12-14	2019-11-04	4.0	3.50	—	3.4	0.011	1.12	0.0	0.06	8.48	0.01	2.237	10.49	0.00	10.4	89.6	0.0	-5.14	0.62	0.76	—	3.4	0.003	0.55	0.0	0.04	12.92	0.00	2.127	6.16	0.00	5.8	94.2	0.0	2.54	1.43	0.65	0.80	—	22692	1920	12	0	0	0	9696	logfile
✔	6V5C	21052	2022-12-12	2019-12-04	4.4	4.97	—	4.6	0.007	1.27	7.0	0.07	17.23	0.01	2.023	18.25	1.84	13.7	85.9	0.4	-4.86	0.81	0.80	—	4.6	0.003	0.74	0.0	0.04	15.60	0.00	2.058	16.78	0.00	12.7	87.3	0.0	-2.59	0.70	0.81	0.80	—	12251	1336	4	66	0	0	0	logfile
✔	6XNX	22272	2022-12-13	2020-07-05	2.7	2.86	—	2.8	0.013	0.79	4.0	0.06	19.99	0.00	1.724	16.91	2.35	6.7	93.2	0.1	-4.23	0.72	0.80	4.22	2.8	0.004	0.69	0.0	0.04	21.31	0.00	2.003	22.15	3.37	4.8	95.1	0.1	-0.99	1.13	0.73	0.83	3.61	16540	1782	13	116	6	0	0	logfile
✔	6XNY	22273	2022-12-13	2020-07-05	2.9	3.02	—	3.0	0.011	0.82	6.0	0.06	20.59	0.01	1.619	17.02	3.25	9.0	90.9	0.1	-4.52	0.70	0.79	3.92	3.0	0.004	0.69	0.0	0.04	21.46	0.00	1.940	22.16	3.00	5.1	94.9	0.1	-1.29	0.61	0.71	0.81	3.27	16681	1787	12	122	6	0	0	logfile
✘	6LMK	0917	2022-12-18	2019-12-26	3.7	3.89	—	3.8	0.009	0.96	0.0	0.06	15.10	0.01	2.283	7.19	0.62	6.5	93.5	0.0	-4.19	0.68	0.82	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9240	1178	6	0	0	0	0	logfile
✔	6Y90	10731	2022-12-12	2020-03-06	3.69	4.05	—	4.0	0.007	0.90	0.0	0.07	14.16	0.00	2.268	7.74	0.19	2.8	97.2	0.0	0.18	0.59	0.76	1.32	4.0	0.004	0.71	0.0	0.04	15.98	0.00	2.151	13.56	0.29	5.1	94.9	0.0	-0.49	1.00	0.60	0.81	1.72	9778	1218	8	0	20	0	0	logfile
✔	6V93	21115	2022-12-14	2019-12-13	3.1	3.37	—	3.3	0.006	0.74	0.0	0.75	12.61	0.00	2.117	6.56	0.00	7.0	93.0	0.0	-2.84	0.78	0.84	3.32	3.3	0.007	1.29	0.0	0.24	14.62	0.00	2.124	7.92	0.11	7.2	92.7	0.0	-0.47	0.34	0.80	0.86	3.21	18105	2198	14	26	4	220	0	logfile
✔	6JPQ	9870	2022-12-15	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.56	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.003	0.82	0.0	0.05	12.82	0.01	2.120	19.42	0.00	8.0	92.0	0.0	-2.05	1.77	0.82	0.80	—	27768	3462	6	0	0	0	0	logfile
✔	6XE6	22144	2022-12-11	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.92	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.76	0.0	0.04	13.55	0.00	2.180	13.85	0.00	9.8	89.7	0.5	-1.86	1.21	0.53	0.75	—	6530	826	1	0	6	0	0	logfile
✔	6XNZ	22274	2022-12-13	2020-07-05	3.8	3.89	—	3.8	0.011	0.97	4.0	0.06	20.54	0.01	1.842	27.76	1.72	14.3	85.5	0.1	-6.04	0.69	0.72	1.11	3.8	0.004	0.80	0.0	0.04	21.71	0.00	2.025	26.47	0.57	10.1	89.9	0.0	-2.76	1.72	0.69	0.72	0.72	16544	1785	12	116	2	0	0	logfile
✔	7BTE	30177	2022-12-13	2020-04-01	4.2	4.34	—	4.2	0.006	0.70	0.0	0.05	15.02	0.00	1.835	13.95	13.76	12.7	87.3	0.0	-5.33	0.76	0.90	—	4.2	0.003	0.69	0.0	0.04	12.65	0.00	1.904	11.50	0.00	6.6	93.4	0.0	-1.84	1.49	0.75	0.89	—	14814	1894	13	0	10	0	0	logfile
✔	6LML	0918	2022-12-12	2019-12-26	3.9	4.02	—	3.9	0.006	0.96	0.0	0.06	15.40	0.01	2.260	7.42	0.51	8.8	91.2	0.0	-5.53	0.69	0.80	1.70	3.9	0.004	0.70	0.0	0.04	16.46	0.00	2.167	13.64	0.41	7.6	92.4	0.0	-1.96	1.05	0.69	0.80	1.26	9438	1219	6	0	0	0	0	logfile
✔	6WHY	21680	2022-12-15	2020-04-08	4.03	4.59	—	4.4	0.006	0.83	2.0	0.06	14.57	0.00	2.150	16.67	1.71	15.5	84.5	0.0	-5.12	0.61	0.65	—	4.4	0.004	0.71	2.0	0.04	13.63	0.00	2.112	11.64	0.00	11.2	88.8	0.0	-2.10	0.53	0.69	0.76	—	22198	3098	10	0	8	0	0	logfile

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