Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iYC	9751	2023-04-22	2018-12-14	2.6	2.84	—	2.9	0.011	1.20	0.0	0.07	11.41	0.01	2.053	3.52	0.88	7.5	92.3	0.2	-3.74	0.71	0.85	3.81	2.8	0.003	0.74	0.0	0.05	15.90	0.00	2.094	7.72	2.37	5.5	94.4	0.1	0.17	1.29	0.71	0.87	2.73	11037	1355	14	0	26	0	0	logfile
✔	7CN1	30413	2023-04-20	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.002	0.60	0.0	0.04	15.22	0.00	2.206	8.47	0.32	5.1	94.9	0.0	0.32	0.61	0.48	0.75	1.56	6290	822	6	0	3	0	0	logfile
✔	7CH1	30368	2023-04-21	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.39	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.003	0.59	0.0	0.04	14.61	0.00	2.234	4.04	1.48	3.5	96.5	0.0	1.89	1.63	0.69	0.89	3.15	9948	1280	6	0	6	76	0	logfile
✔	7V7S	31780	2023-04-27	2021-08-21	3.0	3.84	—	3.3	0.004	0.59	0.0	0.05	13.81	0.00	2.197	7.39	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.007	0.66	0.0	0.05	15.26	0.00	2.137	8.91	1.11	5.4	94.6	0.0	0.01	0.30	0.87	0.86	1.96	25255	3088	39	0	81	0	0	logfile
✔	6PLW	20378	2023-04-23	2019-07-01	3.0	3.83	—	3.5	0.010	1.02	0.0	0.06	9.90	0.01	2.276	5.10	0.00	3.5	96.5	0.0	-4.80	0.76	0.88	4.48	3.5	0.003	0.72	0.0	0.04	14.09	0.00	2.139	11.84	2.25	3.5	96.5	0.0	-0.70	0.74	0.75	0.88	3.59	14095	1730	15	0	20	0	0	logfile
✘	7UK4	26574	2023-04-23	2022-03-31	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14487	1856	6	0	2	390	0	logfile
✔	7TW1	26147	2023-04-26	2022-02-06	4.6	3.99	—	3.8	0.003	0.74	0.0	0.05	13.82	0.00	2.117	7.55	0.08	2.5	97.5	0.0	-0.20	0.75	0.78	—	3.7	0.003	0.64	0.0	0.04	13.96	0.00	2.179	12.52	0.04	4.1	95.9	0.0	-0.25	1.17	0.75	0.79	—	23625	2993	4	0	0	0	0	logfile
✔	7TGW	25887	2023-04-27	2022-01-09	3.0	3.69	—	3.4	0.007	0.86	0.0	0.10	13.01	0.01	1.983	10.37	0.24	7.3	92.6	0.0	-2.46	0.86	0.88	3.64	3.4	0.003	0.68	0.0	0.05	14.39	0.00	2.121	6.29	0.79	5.4	94.6	0.0	-0.74	0.50	0.86	0.89	2.91	26617	3307	18	0	45	0	0	logfile
✔	7TZo	26213	2023-04-21	2022-02-16	3.28	3.77	—	3.7	0.008	1.12	34.0	0.08	14.31	0.01	1.176	19.37	1.53	6.6	93.1	0.3	-1.06	0.68	0.74	0.94	3.7	0.003	0.67	0.0	0.04	16.58	0.00	2.177	8.88	0.23	4.6	95.3	0.1	0.81	1.49	0.73	0.83	1.04	57117	7481	8	0	0	0	0	logfile
✔	7V7Q	31778	2023-04-27	2021-08-21	2.8	3.73	—	3.2	0.004	0.58	0.0	0.05	13.81	0.00	2.148	6.16	0.00	3.9	96.0	0.1	0.05	0.89	0.87	2.71	3.2	0.003	0.57	0.0	0.04	15.18	0.00	2.185	6.14	1.22	4.5	95.4	0.1	0.32	1.13	0.88	0.87	2.26	25371	3096	42	0	84	0	0	logfile
✔	7JQQ	22441	2023-04-28	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.003	0.78	0.0	0.04	22.83	0.00	1.952	22.64	0.00	9.6	90.4	0.0	-2.18	0.49	0.35	0.58	—	28416	1635	15	705	6	0	0	logfile
✔	7V7R	31779	2023-04-27	2021-08-21	2.9	3.74	—	3.2	0.004	0.61	0.0	0.05	13.58	0.00	2.163	6.28	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.003	0.59	0.0	0.04	14.81	0.00	2.180	6.28	1.07	4.5	95.4	0.1	0.27	0.27	0.88	0.87	2.31	25362	3095	42	0	84	0	0	logfile
✔	7UX2	26846	2023-04-20	2022-05-04	2.9	3.04	—	3.0	0.003	0.64	0.0	0.04	14.24	0.00	1.999	4.45	0.00	5.1	94.9	0.0	0.24	0.74	0.78	3.35	3.0	0.003	0.56	0.0	0.04	16.42	0.00	1.862	7.84	0.73	4.8	95.2	0.0	0.30	0.48	0.74	0.82	3.07	54396	3421	20	2	4	0	27147	logfile
✔	7BAo	12126	2023-04-23	2020-12-16	2.7	2.98	—	2.9	0.011	1.00	0.0	0.06	12.98	0.01	2.075	8.24	0.06	5.9	94.1	0.0	-1.77	0.77	0.88	4.68	2.9	0.003	0.69	0.0	0.05	15.54	0.00	2.160	5.63	1.62	4.8	95.2	0.0	-0.15	2.57	0.78	0.90	3.90	15306	1904	6	0	18	0	0	logfile
✔	7LiT	23385	2023-04-26	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile
✔	6U5F	20644	2023-04-19	2019-08-27	3.8	3.74	—	3.7	0.007	1.01	0.0	0.06	10.02	0.01	2.238	6.14	0.38	11.0	89.0	0.0	-5.43	0.61	0.81	3.06	3.7	0.004	0.74	0.0	0.05	15.10	0.00	1.968	12.19	0.69	9.5	90.5	0.0	-2.48	1.25	0.62	0.82	2.51	107550	14232	54	0	0	0	0	logfile
✔	7T94	25751	2023-04-22	2021-12-17	3.16	2.39	—	2.1	0.007	0.93	2.0	0.06	12.20	0.00	2.081	8.29	0.12	5.3	94.7	0.0	-0.68	0.77	0.77	3.26	2.1	0.004	0.68	0.0	0.04	14.96	0.00	2.127	8.35	0.46	5.5	94.5	0.0	-0.03	0.96	0.78	0.80	2.68	8388	1113	6	0	2	1	0	logfile
✘	7M5X	23684	2023-04-23	2021-03-25	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15476	1000	1	0	25	11	7545	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7WHK	32503	2023-04-29	2021-12-30	3.01	2.59	—	3.1	0.004	0.70	1.0	0.05	11.56	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.003	0.74	0.0	0.05	14.08	0.00	2.041	11.38	0.41	6.3	93.6	0.0	-1.41	0.71	0.79	0.82	2.57	29150	3697	11	0	28	0	0	logfile

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