Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VXD	32176	2023-08-21	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.73	0.0	0.04	14.17	0.00	2.102	16.36	0.45	4.0	96.0	0.0	-0.78	1.63	0.74	0.74	—	30194	3829	4	0	0	0	0	logfile
✘	6H4N	0137	2023-08-30	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	5.99	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147282	6188	57	4636	0	0	0	logfile
✔	6QiK	4560	2023-08-17	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.52	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.3	0.005	0.59	0.0	0.04	15.98	0.00	2.062	7.45	0.50	6.0	94.0	0.0	-1.29	0.43	0.85	0.89	3.24	128569	6843	53	3423	217	0	0	logfile
✔	6G51	4350	2023-08-27	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.005	0.87	0.0	0.04	22.63	0.00	1.977	12.39	0.00	13.4	86.5	0.1	-2.16	1.66	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	7W9C	32364	2023-08-20	2021-12-09	3.2	3.43	—	3.5	0.004	0.61	0.0	0.04	12.69	0.00	2.079	1.76	0.00	2.8	97.2	0.0	-3.72	0.64	0.69	2.04	3.4	0.003	0.60	0.0	0.04	15.92	0.00	2.159	8.97	0.30	3.2	96.8	0.0	-0.17	1.46	0.67	0.76	1.63	29737	3777	4	0	0	0	0	logfile
✘	6G53	4351	2023-08-27	2018-03-28	4.5	4.86	—	4.3	0.007	1.44	21.0	0.10	21.32	0.00	1.260	2.52	0.00	7.1	92.2	0.7	-2.88	0.67	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49052	5912	37	1659	0	0	0	logfile
✔	7E94	31028	2023-08-26	2021-03-03	4.67	5.59	—	4.2	0.008	1.47	7.0	0.08	14.82	0.01	1.403	10.80	1.04	12.4	86.6	1.0	-5.01	0.78	0.52	—	4.1	0.006	0.96	0.0	0.05	13.63	0.01	1.973	34.36	0.05	15.1	84.7	0.2	-3.17	1.54	0.88	0.62	—	46305	6583	22	0	0	0	0	logfile
✔	6NT6	0503	2023-08-09	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.002	0.72	0.0	0.04	15.61	0.00	2.295	7.27	0.00	2.7	97.3	0.0	1.43	1.19	0.69	0.80	—	4198	556	2	0	0	0	0	logfile
✔	7V2F	31644	2023-08-14	2021-08-09	3.1	3.14	—	3.1	0.008	0.85	1.0	0.05	16.51	0.01	1.772	10.43	0.06	4.2	95.7	0.1	0.58	0.79	0.86	3.39	3.1	0.004	0.60	0.0	0.04	16.68	0.00	2.055	8.07	0.28	4.4	95.6	0.0	0.97	0.32	0.81	0.88	3.03	66939	8140	67	0	41	0	0	logfile
✔	6RRD	4987	2023-08-27	2019-05-17	3.1	3.17	—	3.1	0.008	1.09	0.0	0.06	12.67	0.01	2.072	6.12	0.40	8.1	91.8	0.0	-4.92	0.72	0.74	3.13	3.1	0.004	0.68	0.0	0.04	16.77	0.00	2.103	10.91	0.31	6.7	93.3	0.0	-1.30	1.69	0.75	0.79	2.04	51631	6179	21	99	1	0	0	logfile
✔	7E2i	30958	2023-08-11	2021-02-05	4.07	4.31	—	4.1	0.006	0.82	0.0	0.05	14.31	0.00	2.056	20.89	0.00	11.7	88.2	0.1	-4.32	0.62	0.79	—	4.2	0.004	0.81	0.0	0.04	14.31	0.00	2.147	15.65	0.00	10.3	89.7	0.0	-1.49	1.29	0.60	0.77	—	8569	1058	4	0	12	0	0	logfile
✔	7U2A	26310	2023-08-10	2022-02-23	4.1	3.51	—	4.0	0.010	1.05	0.0	0.05	14.76	0.00	1.918	11.25	0.31	0.5	99.5	0.0	2.04	0.59	0.61	—	4.0	0.005	0.73	0.0	0.04	15.30	0.01	2.098	16.08	0.00	3.1	96.9	0.0	-0.13	1.07	0.66	0.73	—	6855	761	5	38	2	0	0	logfile
✔	7W4o	32310	2023-08-10	2021-11-28	2.96	2.49	—	3.1	0.006	0.74	0.0	0.05	11.82	0.01	2.150	4.63	2.15	2.9	97.0	0.1	-0.13	0.81	0.82	2.93	3.1	0.005	0.61	0.0	0.04	15.23	0.00	1.930	10.43	2.83	2.7	97.1	0.2	1.19	0.65	0.81	0.84	2.74	54748	6944	12	0	20	0	0	logfile
✔	7W4F	32303	2023-08-15	2021-11-27	2.7	2.82	—	2.8	0.008	0.82	1.0	0.04	18.28	0.01	2.201	6.62	1.59	3.8	96.2	0.1	0.96	0.79	0.89	3.43	2.8	0.003	0.57	0.0	0.04	17.61	0.00	2.145	6.11	2.22	3.5	96.4	0.1	1.12	0.26	0.78	0.89	3.43	68192	8270	70	0	46	0	0	logfile
✔	7BQT	30155	2023-08-24	2020-03-25	4.8	4.89	—	4.8	0.006	1.07	0.0	0.06	15.96	0.01	2.230	11.08	0.66	6.3	93.7	0.0	-4.15	0.57	0.79	—	4.8	0.004	0.87	0.0	0.05	14.20	0.01	2.011	22.93	0.00	6.9	93.1	0.0	-2.67	1.94	0.55	0.78	—	39180	4860	12	0	0	0	0	logfile
✔	6N09	9313	2023-08-11	2018-11-06	3.5	3.67	—	3.6	0.009	0.86	0.0	0.06	9.20	0.01	2.233	6.22	0.20	3.7	96.3	0.0	-3.46	0.80	0.85	3.84	3.6	0.004	0.67	0.0	0.04	14.77	0.00	2.016	14.36	0.60	2.1	97.9	0.0	-0.02	3.19	0.80	0.85	3.04	60325	8162	60	0	0	0	0	logfile
✔	6N3A	9349	2023-08-09	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.7	0.005	0.90	0.0	0.04	18.94	0.00	2.214	16.77	0.68	10.4	89.6	0.0	-5.19	1.68	0.52	0.79	2.83	4310	600	20	0	0	0	0	logfile
✔	6PoE	20413	2023-08-21	2019-07-03	3.5	3.59	—	3.5	0.037	1.46	0.0	0.06	16.74	0.01	1.661	10.33	11.53	7.2	92.6	0.1	-4.29	0.72	0.72	2.58	3.5	0.003	0.71	0.0	0.04	16.02	0.00	2.086	13.46	0.24	5.9	94.1	0.0	-1.00	1.07	0.76	0.80	2.14	31812	4084	8	0	4	3	0	logfile
✔	7PDE	13335	2023-08-11	2021-08-05	4.5	4.95	—	4.5	0.006	0.79	0.0	0.04	14.84	0.00	1.869	29.42	0.19	9.2	90.8	0.0	-3.63	0.69	0.80	—	4.5	0.003	0.68	0.0	0.04	13.91	0.00	2.002	15.15	0.10	5.2	94.8	0.0	-0.01	1.35	0.68	0.79	—	9553	1187	2	0	2	0	0	logfile
✔	7CFN	30345	2023-08-10	2020-06-27	3.0	3.32	—	3.3	0.008	1.04	0.0	0.06	10.52	0.01	1.979	7.47	0.12	2.6	97.4	0.0	-2.77	0.62	0.79	4.20	3.3	0.003	0.62	0.0	0.04	14.51	0.00	2.157	7.16	1.07	1.8	98.2	0.0	0.96	0.55	0.61	0.79	3.05	8112	1031	5	0	4	1	0	logfile

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