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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VXD | 32176 | 2023-08-21 | 2021-11-12 | 4.0 | 4.60 | — | 4.2 | 0.003 | 0.50 | 0.0 | 0.04 | 7.89 | 0.00 | 2.091 | 7.52 | 0.03 | 4.0 | 95.9 | 0.2 | -2.30 | 0.70 | 0.65 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 14.17 | 0.00 | 2.102 | 16.36 | 0.45 | 4.0 | 96.0 | 0.0 | -0.78 | 1.63 | 0.74 | 0.74 | — | 30194 | 3829 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6H4N | 0137 | 2023-08-30 | 2018-07-22 | 3.0 | 3.20 | — | 3.1 | 0.007 | 0.96 | 4.0 | 0.05 | 14.51 | 0.01 | 0.418 | 5.99 | 0.74 | 10.1 | 89.4 | 0.5 | -4.18 | 0.86 | 0.87 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147282 | 6188 | 57 | 4636 | 0 | 0 | 0 | logfile |
✔ | 6QiK | 4560 | 2023-08-17 | 2019-01-20 | 3.1 | 3.35 | — | 3.3 | 0.014 | 0.99 | 2.0 | 0.06 | 15.84 | 0.01 | 1.872 | 3.52 | 0.80 | 8.3 | 91.5 | 0.2 | -4.17 | 0.84 | 0.86 | 3.77 | 3.3 | 0.005 | 0.59 | 0.0 | 0.04 | 15.98 | 0.00 | 2.062 | 7.45 | 0.50 | 6.0 | 94.0 | 0.0 | -1.29 | 0.43 | 0.85 | 0.89 | 3.24 | 128569 | 6843 | 53 | 3423 | 217 | 0 | 0 | logfile |
✔ | 6G51 | 4350 | 2023-08-27 | 2018-03-28 | 4.1 | 4.42 | — | 4.0 | 0.007 | 1.44 | 22.0 | 0.10 | 21.21 | 0.00 | 0.264 | 3.79 | 0.00 | 7.0 | 92.3 | 0.8 | -2.90 | 0.71 | 0.63 | — | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 22.63 | 0.00 | 1.977 | 12.39 | 0.00 | 13.4 | 86.5 | 0.1 | -2.16 | 1.66 | 0.81 | 0.69 | — | 50662 | 6237 | 38 | 1659 | 0 | 0 | 0 | logfile |
✔ | 7W9C | 32364 | 2023-08-20 | 2021-12-09 | 3.2 | 3.43 | — | 3.5 | 0.004 | 0.61 | 0.0 | 0.04 | 12.69 | 0.00 | 2.079 | 1.76 | 0.00 | 2.8 | 97.2 | 0.0 | -3.72 | 0.64 | 0.69 | 2.04 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.92 | 0.00 | 2.159 | 8.97 | 0.30 | 3.2 | 96.8 | 0.0 | -0.17 | 1.46 | 0.67 | 0.76 | 1.63 | 29737 | 3777 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6G53 | 4351 | 2023-08-27 | 2018-03-28 | 4.5 | 4.86 | — | 4.3 | 0.007 | 1.44 | 21.0 | 0.10 | 21.32 | 0.00 | 1.260 | 2.52 | 0.00 | 7.1 | 92.2 | 0.7 | -2.88 | 0.67 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49052 | 5912 | 37 | 1659 | 0 | 0 | 0 | logfile |
✔ | 7E94 | 31028 | 2023-08-26 | 2021-03-03 | 4.67 | 5.59 | — | 4.2 | 0.008 | 1.47 | 7.0 | 0.08 | 14.82 | 0.01 | 1.403 | 10.80 | 1.04 | 12.4 | 86.6 | 1.0 | -5.01 | 0.78 | 0.52 | — | 4.1 | 0.006 | 0.96 | 0.0 | 0.05 | 13.63 | 0.01 | 1.973 | 34.36 | 0.05 | 15.1 | 84.7 | 0.2 | -3.17 | 1.54 | 0.88 | 0.62 | — | 46305 | 6583 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NT6 | 0503 | 2023-08-09 | 2019-01-28 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 11.99 | 0.01 | 2.316 | 3.70 | 0.00 | 3.8 | 96.2 | 0.0 | -3.32 | 0.69 | 0.80 | — | 4.1 | 0.002 | 0.72 | 0.0 | 0.04 | 15.61 | 0.00 | 2.295 | 7.27 | 0.00 | 2.7 | 97.3 | 0.0 | 1.43 | 1.19 | 0.69 | 0.80 | — | 4198 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V2F | 31644 | 2023-08-14 | 2021-08-09 | 3.1 | 3.14 | — | 3.1 | 0.008 | 0.85 | 1.0 | 0.05 | 16.51 | 0.01 | 1.772 | 10.43 | 0.06 | 4.2 | 95.7 | 0.1 | 0.58 | 0.79 | 0.86 | 3.39 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 16.68 | 0.00 | 2.055 | 8.07 | 0.28 | 4.4 | 95.6 | 0.0 | 0.97 | 0.32 | 0.81 | 0.88 | 3.03 | 66939 | 8140 | 67 | 0 | 41 | 0 | 0 | logfile |
✔ | 6RRD | 4987 | 2023-08-27 | 2019-05-17 | 3.1 | 3.17 | — | 3.1 | 0.008 | 1.09 | 0.0 | 0.06 | 12.67 | 0.01 | 2.072 | 6.12 | 0.40 | 8.1 | 91.8 | 0.0 | -4.92 | 0.72 | 0.74 | 3.13 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 16.77 | 0.00 | 2.103 | 10.91 | 0.31 | 6.7 | 93.3 | 0.0 | -1.30 | 1.69 | 0.75 | 0.79 | 2.04 | 51631 | 6179 | 21 | 99 | 1 | 0 | 0 | logfile |
✔ | 7E2i | 30958 | 2023-08-11 | 2021-02-05 | 4.07 | 4.31 | — | 4.1 | 0.006 | 0.82 | 0.0 | 0.05 | 14.31 | 0.00 | 2.056 | 20.89 | 0.00 | 11.7 | 88.2 | 0.1 | -4.32 | 0.62 | 0.79 | — | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 14.31 | 0.00 | 2.147 | 15.65 | 0.00 | 10.3 | 89.7 | 0.0 | -1.49 | 1.29 | 0.60 | 0.77 | — | 8569 | 1058 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7U2A | 26310 | 2023-08-10 | 2022-02-23 | 4.1 | 3.51 | — | 4.0 | 0.010 | 1.05 | 0.0 | 0.05 | 14.76 | 0.00 | 1.918 | 11.25 | 0.31 | 0.5 | 99.5 | 0.0 | 2.04 | 0.59 | 0.61 | — | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 15.30 | 0.01 | 2.098 | 16.08 | 0.00 | 3.1 | 96.9 | 0.0 | -0.13 | 1.07 | 0.66 | 0.73 | — | 6855 | 761 | 5 | 38 | 2 | 0 | 0 | logfile |
✔ | 7W4o | 32310 | 2023-08-10 | 2021-11-28 | 2.96 | 2.49 | — | 3.1 | 0.006 | 0.74 | 0.0 | 0.05 | 11.82 | 0.01 | 2.150 | 4.63 | 2.15 | 2.9 | 97.0 | 0.1 | -0.13 | 0.81 | 0.82 | 2.93 | 3.1 | 0.005 | 0.61 | 0.0 | 0.04 | 15.23 | 0.00 | 1.930 | 10.43 | 2.83 | 2.7 | 97.1 | 0.2 | 1.19 | 0.65 | 0.81 | 0.84 | 2.74 | 54748 | 6944 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7W4F | 32303 | 2023-08-15 | 2021-11-27 | 2.7 | 2.82 | — | 2.8 | 0.008 | 0.82 | 1.0 | 0.04 | 18.28 | 0.01 | 2.201 | 6.62 | 1.59 | 3.8 | 96.2 | 0.1 | 0.96 | 0.79 | 0.89 | 3.43 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 17.61 | 0.00 | 2.145 | 6.11 | 2.22 | 3.5 | 96.4 | 0.1 | 1.12 | 0.26 | 0.78 | 0.89 | 3.43 | 68192 | 8270 | 70 | 0 | 46 | 0 | 0 | logfile |
✔ | 7BQT | 30155 | 2023-08-24 | 2020-03-25 | 4.8 | 4.89 | — | 4.8 | 0.006 | 1.07 | 0.0 | 0.06 | 15.96 | 0.01 | 2.230 | 11.08 | 0.66 | 6.3 | 93.7 | 0.0 | -4.15 | 0.57 | 0.79 | — | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 14.20 | 0.01 | 2.011 | 22.93 | 0.00 | 6.9 | 93.1 | 0.0 | -2.67 | 1.94 | 0.55 | 0.78 | — | 39180 | 4860 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N09 | 9313 | 2023-08-11 | 2018-11-06 | 3.5 | 3.67 | — | 3.6 | 0.009 | 0.86 | 0.0 | 0.06 | 9.20 | 0.01 | 2.233 | 6.22 | 0.20 | 3.7 | 96.3 | 0.0 | -3.46 | 0.80 | 0.85 | 3.84 | 3.6 | 0.004 | 0.67 | 0.0 | 0.04 | 14.77 | 0.00 | 2.016 | 14.36 | 0.60 | 2.1 | 97.9 | 0.0 | -0.02 | 3.19 | 0.80 | 0.85 | 3.04 | 60325 | 8162 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2023-08-09 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 18.94 | 0.00 | 2.214 | 16.77 | 0.68 | 10.4 | 89.6 | 0.0 | -5.19 | 1.68 | 0.52 | 0.79 | 2.83 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoE | 20413 | 2023-08-21 | 2019-07-03 | 3.5 | 3.59 | — | 3.5 | 0.037 | 1.46 | 0.0 | 0.06 | 16.74 | 0.01 | 1.661 | 10.33 | 11.53 | 7.2 | 92.6 | 0.1 | -4.29 | 0.72 | 0.72 | 2.58 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 16.02 | 0.00 | 2.086 | 13.46 | 0.24 | 5.9 | 94.1 | 0.0 | -1.00 | 1.07 | 0.76 | 0.80 | 2.14 | 31812 | 4084 | 8 | 0 | 4 | 3 | 0 | logfile |
✔ | 7PDE | 13335 | 2023-08-11 | 2021-08-05 | 4.5 | 4.95 | — | 4.5 | 0.006 | 0.79 | 0.0 | 0.04 | 14.84 | 0.00 | 1.869 | 29.42 | 0.19 | 9.2 | 90.8 | 0.0 | -3.63 | 0.69 | 0.80 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.91 | 0.00 | 2.002 | 15.15 | 0.10 | 5.2 | 94.8 | 0.0 | -0.01 | 1.35 | 0.68 | 0.79 | — | 9553 | 1187 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CFN | 30345 | 2023-08-10 | 2020-06-27 | 3.0 | 3.32 | — | 3.3 | 0.008 | 1.04 | 0.0 | 0.06 | 10.52 | 0.01 | 1.979 | 7.47 | 0.12 | 2.6 | 97.4 | 0.0 | -2.77 | 0.62 | 0.79 | 4.20 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 14.51 | 0.00 | 2.157 | 7.16 | 1.07 | 1.8 | 98.2 | 0.0 | 0.96 | 0.55 | 0.61 | 0.79 | 3.05 | 8112 | 1031 | 5 | 0 | 4 | 1 | 0 | logfile |