Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VHQ	32003	2023-02-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.004	0.63	0.0	0.04	15.43	0.00	2.148	10.42	0.61	4.1	95.9	0.0	1.79	0.42	0.74	0.85	1.46	16650	2076	12	0	0	0	0	logfile
✔	6PW4	20498	2023-02-24	2019-07-22	3.53	3.64	—	3.6	0.008	1.14	0.0	0.05	17.20	0.01	2.302	5.63	0.38	10.7	89.3	0.1	-6.92	0.71	0.80	1.68	3.6	0.003	0.72	0.0	0.04	17.49	0.00	2.127	11.19	0.42	9.9	90.1	0.0	-1.43	0.56	0.70	0.78	1.07	22348	2742	8	0	10	0	0	logfile
✔	7D10	30542	2023-02-17	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	6L7C	0842	2023-02-23	2019-11-01	3.34	3.45	—	3.4	0.006	0.86	0.0	0.05	14.85	0.01	2.347	3.80	1.20	4.3	95.7	0.0	-3.41	0.73	0.84	2.34	3.4	0.003	0.64	0.0	0.04	16.78	0.00	2.208	8.94	0.22	3.4	96.6	0.0	1.03	0.57	0.76	0.86	1.84	20601	2655	27	0	0	0	0	logfile
✔	6PEK	20327	2023-02-20	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	6Bo8	7120	2023-02-23	2017-11-18	3.6	3.64	—	3.6	0.008	1.19	0.0	0.06	10.83	0.01	2.286	7.18	0.97	11.0	89.0	0.0	-4.49	0.56	0.62	1.58	3.6	0.004	0.80	0.0	0.04	16.02	0.00	2.179	12.06	0.24	10.1	89.9	0.0	-0.60	1.34	0.75	0.80	1.82	19048	2372	4	0	0	0	0	logfile
✔	6BoB	7123	2023-02-23	2017-11-18	3.9	3.98	—	3.9	0.007	1.20	0.0	0.06	11.84	0.01	2.259	7.24	0.76	11.1	88.5	0.3	-4.96	0.58	0.65	1.68	3.9	0.004	0.89	0.0	0.05	16.41	0.00	2.099	13.75	0.76	8.4	91.6	0.0	-1.37	0.99	0.73	0.80	1.63	19340	2412	4	0	0	0	0	logfile
✔	5BKK	9407	2023-02-22	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.72	0.00	2.242	5.33	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.56	0.0	0.05	16.37	0.00	2.142	8.29	0.33	2.9	97.1	0.0	-0.82	1.21	0.65	0.82	2.02	16831	2156	11	0	6	0	0	logfile
✔	7ND2	12273	2023-02-22	2021-01-29	4.0	4.21	—	4.0	0.011	1.65	4.0	0.09	13.92	0.01	2.172	11.78	0.22	5.0	94.7	0.3	-0.95	0.85	0.73	—	4.0	0.004	0.79	0.0	0.04	15.90	0.00	2.112	22.23	0.66	5.1	94.7	0.2	-0.38	0.68	0.86	0.75	—	16824	2204	8	0	0	0	0	logfile
✔	6TG9	10495	2023-02-25	2019-11-15	3.24	3.34	—	3.3	0.016	1.33	0.0	0.06	14.65	0.00	1.847	11.53	0.62	7.8	92.0	0.2	-4.02	0.80	0.78	3.11	3.3	0.004	0.69	0.0	0.04	16.26	0.00	1.975	10.47	0.23	5.3	94.5	0.1	-1.22	0.68	0.83	0.84	2.89	25412	3318	14	0	26	0	0	logfile
✘	7ELA	31178	2023-02-20	2021-04-09	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.25	0.00	2.153	11.82	2.79	7.9	92.1	0.0	-2.61	0.72	0.78	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11791	1451	5	7	3	0	0	logfile
✔	6ZA9	11127	2023-02-20	2020-06-05	3.76	3.97	—	3.9	0.012	1.53	0.0	0.24	15.81	0.01	2.254	5.79	0.74	4.0	96.0	0.0	-3.65	0.67	0.81	2.40	3.9	0.003	0.72	0.0	0.04	16.90	0.01	2.183	12.49	0.28	3.7	96.3	0.0	0.35	1.28	0.66	0.78	1.13	11067	1375	23	0	9	0	0	logfile
✔	7PKo	13474	2023-02-23	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.65	0.0	0.04	16.06	0.00	2.180	12.19	0.62	5.6	94.4	0.0	-0.75	0.64	0.75	0.81	2.41	20368	2504	8	0	0	0	0	logfile
✔	6N7S	0362	2023-02-20	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.87	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6o7H	0641	2023-02-22	2019-03-07	2.9	3.03	—	3.0	0.006	1.10	0.0	0.07	12.42	0.01	1.596	11.46	1.21	5.3	94.6	0.1	-4.35	0.74	0.81	3.78	3.0	0.003	0.65	0.0	0.04	16.45	0.00	2.155	8.52	1.99	4.9	95.1	0.0	-0.40	0.79	0.74	0.85	3.03	17576	2038	13	51	96	0	0	logfile
✔	6UWN	20925	2023-02-20	2019-11-05	3.5	3.59	—	3.6	0.007	0.73	0.0	0.05	13.75	0.00	2.285	3.49	0.15	3.4	96.6	0.0	-4.35	0.67	0.83	2.62	3.6	0.003	0.55	0.0	0.05	15.85	0.00	2.126	6.29	0.65	2.7	97.3	0.0	0.44	0.58	0.66	0.81	1.79	13258	1776	20	0	24	4	0	logfile
✔	6BoA	7122	2023-02-23	2017-11-18	4.2	4.31	—	4.3	0.007	1.29	0.0	0.06	11.91	0.01	2.296	4.73	1.74	10.5	89.5	0.0	-5.87	0.73	0.81	—	4.2	0.004	0.85	0.0	0.05	13.51	0.00	2.139	12.64	0.19	10.2	89.8	0.0	-0.72	1.90	0.74	0.82	—	19040	2372	4	0	0	0	0	logfile
✔	7EKi	31168	2023-02-21	2021-04-05	3.18	3.70	—	3.6	0.005	0.61	0.0	0.06	12.25	0.00	2.230	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.002	0.53	0.0	0.04	13.80	0.00	2.183	5.16	0.18	5.1	94.9	0.0	-0.53	0.39	0.70	0.82	2.46	16005	1975	15	0	20	0	0	logfile
✘	5Z96	6901	2023-02-23	2018-02-02	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21494	2665	8	0	13	0	0	logfile
✔	7BW4	30226	2023-02-18	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.003	0.74	0.0	0.05	16.62	0.00	2.197	15.13	0.53	4.8	95.1	0.1	-1.02	1.36	0.77	0.77	1.41	8605	1078	5	0	2	0	0	logfile

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