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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VHQ | 32003 | 2023-02-22 | 2021-09-22 | 3.27 | 3.68 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.43 | 0.00 | 2.165 | 9.53 | 0.00 | 3.1 | 96.9 | 0.0 | 1.82 | 0.73 | 0.82 | 1.67 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.43 | 0.00 | 2.148 | 10.42 | 0.61 | 4.1 | 95.9 | 0.0 | 1.79 | 0.42 | 0.74 | 0.85 | 1.46 | 16650 | 2076 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PW4 | 20498 | 2023-02-24 | 2019-07-22 | 3.53 | 3.64 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 17.20 | 0.01 | 2.302 | 5.63 | 0.38 | 10.7 | 89.3 | 0.1 | -6.92 | 0.71 | 0.80 | 1.68 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 17.49 | 0.00 | 2.127 | 11.19 | 0.42 | 9.9 | 90.1 | 0.0 | -1.43 | 0.56 | 0.70 | 0.78 | 1.07 | 22348 | 2742 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 7D10 | 30542 | 2023-02-17 | 2020-09-12 | 3.52 | 3.70 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.06 | 10.87 | 0.01 | 2.249 | 4.93 | 0.00 | 8.9 | 90.6 | 0.5 | -6.70 | 0.65 | 0.83 | 3.73 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.238 | 7.52 | 0.34 | 6.4 | 93.6 | 0.0 | -1.75 | 1.20 | 0.63 | 0.83 | 2.64 | 6424 | 892 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6L7C | 0842 | 2023-02-23 | 2019-11-01 | 3.34 | 3.45 | — | 3.4 | 0.006 | 0.86 | 0.0 | 0.05 | 14.85 | 0.01 | 2.347 | 3.80 | 1.20 | 4.3 | 95.7 | 0.0 | -3.41 | 0.73 | 0.84 | 2.34 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 16.78 | 0.00 | 2.208 | 8.94 | 0.22 | 3.4 | 96.6 | 0.0 | 1.03 | 0.57 | 0.76 | 0.86 | 1.84 | 20601 | 2655 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2023-02-20 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.87 | 0.00 | 1.129 | 14.37 | 0.00 | 3.0 | 97.0 | 0.0 | -0.34 | 0.99 | 0.71 | 0.77 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 6Bo8 | 7120 | 2023-02-23 | 2017-11-18 | 3.6 | 3.64 | — | 3.6 | 0.008 | 1.19 | 0.0 | 0.06 | 10.83 | 0.01 | 2.286 | 7.18 | 0.97 | 11.0 | 89.0 | 0.0 | -4.49 | 0.56 | 0.62 | 1.58 | 3.6 | 0.004 | 0.80 | 0.0 | 0.04 | 16.02 | 0.00 | 2.179 | 12.06 | 0.24 | 10.1 | 89.9 | 0.0 | -0.60 | 1.34 | 0.75 | 0.80 | 1.82 | 19048 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BoB | 7123 | 2023-02-23 | 2017-11-18 | 3.9 | 3.98 | — | 3.9 | 0.007 | 1.20 | 0.0 | 0.06 | 11.84 | 0.01 | 2.259 | 7.24 | 0.76 | 11.1 | 88.5 | 0.3 | -4.96 | 0.58 | 0.65 | 1.68 | 3.9 | 0.004 | 0.89 | 0.0 | 0.05 | 16.41 | 0.00 | 2.099 | 13.75 | 0.76 | 8.4 | 91.6 | 0.0 | -1.37 | 0.99 | 0.73 | 0.80 | 1.63 | 19340 | 2412 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5BKK | 9407 | 2023-02-22 | 2021-03-19 | 3.5 | 3.17 | — | 3.5 | 0.004 | 0.72 | 0.0 | 0.05 | 14.72 | 0.00 | 2.242 | 5.33 | 0.11 | 3.5 | 96.5 | 0.0 | -4.88 | 0.68 | 0.82 | 2.52 | 3.5 | 0.003 | 0.56 | 0.0 | 0.05 | 16.37 | 0.00 | 2.142 | 8.29 | 0.33 | 2.9 | 97.1 | 0.0 | -0.82 | 1.21 | 0.65 | 0.82 | 2.02 | 16831 | 2156 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ND2 | 12273 | 2023-02-22 | 2021-01-29 | 4.0 | 4.21 | — | 4.0 | 0.011 | 1.65 | 4.0 | 0.09 | 13.92 | 0.01 | 2.172 | 11.78 | 0.22 | 5.0 | 94.7 | 0.3 | -0.95 | 0.85 | 0.73 | — | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 15.90 | 0.00 | 2.112 | 22.23 | 0.66 | 5.1 | 94.7 | 0.2 | -0.38 | 0.68 | 0.86 | 0.75 | — | 16824 | 2204 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TG9 | 10495 | 2023-02-25 | 2019-11-15 | 3.24 | 3.34 | — | 3.3 | 0.016 | 1.33 | 0.0 | 0.06 | 14.65 | 0.00 | 1.847 | 11.53 | 0.62 | 7.8 | 92.0 | 0.2 | -4.02 | 0.80 | 0.78 | 3.11 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 16.26 | 0.00 | 1.975 | 10.47 | 0.23 | 5.3 | 94.5 | 0.1 | -1.22 | 0.68 | 0.83 | 0.84 | 2.89 | 25412 | 3318 | 14 | 0 | 26 | 0 | 0 | logfile |
✘ | 7ELA | 31178 | 2023-02-20 | 2021-04-09 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.25 | 0.00 | 2.153 | 11.82 | 2.79 | 7.9 | 92.1 | 0.0 | -2.61 | 0.72 | 0.78 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11791 | 1451 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 6ZA9 | 11127 | 2023-02-20 | 2020-06-05 | 3.76 | 3.97 | — | 3.9 | 0.012 | 1.53 | 0.0 | 0.24 | 15.81 | 0.01 | 2.254 | 5.79 | 0.74 | 4.0 | 96.0 | 0.0 | -3.65 | 0.67 | 0.81 | 2.40 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 16.90 | 0.01 | 2.183 | 12.49 | 0.28 | 3.7 | 96.3 | 0.0 | 0.35 | 1.28 | 0.66 | 0.78 | 1.13 | 11067 | 1375 | 23 | 0 | 9 | 0 | 0 | logfile |
✔ | 7PKo | 13474 | 2023-02-23 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 16.06 | 0.00 | 2.180 | 12.19 | 0.62 | 5.6 | 94.4 | 0.0 | -0.75 | 0.64 | 0.75 | 0.81 | 2.41 | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N7S | 0362 | 2023-02-20 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 14.71 | 0.00 | 1.879 | 15.87 | 0.00 | 5.3 | 94.7 | 0.0 | -2.15 | 1.90 | 0.71 | 0.59 | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✔ | 6o7H | 0641 | 2023-02-22 | 2019-03-07 | 2.9 | 3.03 | — | 3.0 | 0.006 | 1.10 | 0.0 | 0.07 | 12.42 | 0.01 | 1.596 | 11.46 | 1.21 | 5.3 | 94.6 | 0.1 | -4.35 | 0.74 | 0.81 | 3.78 | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.45 | 0.00 | 2.155 | 8.52 | 1.99 | 4.9 | 95.1 | 0.0 | -0.40 | 0.79 | 0.74 | 0.85 | 3.03 | 17576 | 2038 | 13 | 51 | 96 | 0 | 0 | logfile |
✔ | 6UWN | 20925 | 2023-02-20 | 2019-11-05 | 3.5 | 3.59 | — | 3.6 | 0.007 | 0.73 | 0.0 | 0.05 | 13.75 | 0.00 | 2.285 | 3.49 | 0.15 | 3.4 | 96.6 | 0.0 | -4.35 | 0.67 | 0.83 | 2.62 | 3.6 | 0.003 | 0.55 | 0.0 | 0.05 | 15.85 | 0.00 | 2.126 | 6.29 | 0.65 | 2.7 | 97.3 | 0.0 | 0.44 | 0.58 | 0.66 | 0.81 | 1.79 | 13258 | 1776 | 20 | 0 | 24 | 4 | 0 | logfile |
✔ | 6BoA | 7122 | 2023-02-23 | 2017-11-18 | 4.2 | 4.31 | — | 4.3 | 0.007 | 1.29 | 0.0 | 0.06 | 11.91 | 0.01 | 2.296 | 4.73 | 1.74 | 10.5 | 89.5 | 0.0 | -5.87 | 0.73 | 0.81 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.05 | 13.51 | 0.00 | 2.139 | 12.64 | 0.19 | 10.2 | 89.8 | 0.0 | -0.72 | 1.90 | 0.74 | 0.82 | — | 19040 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EKi | 31168 | 2023-02-21 | 2021-04-05 | 3.18 | 3.70 | — | 3.6 | 0.005 | 0.61 | 0.0 | 0.06 | 12.25 | 0.00 | 2.230 | 5.79 | 0.88 | 5.3 | 94.7 | 0.0 | -1.88 | 0.69 | 0.81 | 2.83 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 13.80 | 0.00 | 2.183 | 5.16 | 0.18 | 5.1 | 94.9 | 0.0 | -0.53 | 0.39 | 0.70 | 0.82 | 2.46 | 16005 | 1975 | 15 | 0 | 20 | 0 | 0 | logfile |
✘ | 5Z96 | 6901 | 2023-02-23 | 2018-02-02 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21494 | 2665 | 8 | 0 | 13 | 0 | 0 | logfile |
✔ | 7BW4 | 30226 | 2023-02-18 | 2020-04-13 | 3.7 | 3.92 | — | 3.8 | 0.004 | 0.66 | 1.0 | 0.05 | 15.16 | 0.00 | 2.078 | 16.25 | 1.68 | 4.3 | 95.5 | 0.2 | -2.50 | 0.77 | 0.77 | 1.82 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 16.62 | 0.00 | 2.197 | 15.13 | 0.53 | 4.8 | 95.1 | 0.1 | -1.02 | 1.36 | 0.77 | 0.77 | 1.41 | 8605 | 1078 | 5 | 0 | 2 | 0 | 0 | logfile |