Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5W65	8775	2022-12-22	2017-06-16	4.3	4.07	—	3.9	0.009	1.65	79.0	0.10	14.73	0.01	1.089	88.99	4.61	8.9	86.3	4.8	-3.52	0.74	0.65	—	3.9	0.005	0.88	1.0	0.05	15.28	0.01	1.911	21.59	0.04	8.9	90.3	0.8	-0.95	3.12	0.83	0.80	—	47308	5599	26	105	60	0	0	logfile
✔	3JBY	6488	2022-12-18	2015-10-22	3.7	3.78	—	3.8	0.015	1.57	0.0	0.07	20.72	0.01	2.015	24.87	5.74	4.2	95.5	0.3	-3.60	0.77	0.83	2.24	3.7	0.004	0.76	0.0	0.04	21.29	0.00	2.177	15.77	0.63	4.3	95.4	0.3	-0.14	0.86	0.75	0.83	1.47	16846	1802	12	124	6	0	0	logfile
✔	6KLC	0706	2022-12-12	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	11.06	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.004	0.81	0.0	0.05	16.14	0.00	2.094	13.94	0.56	10.2	89.8	0.1	-0.58	1.54	0.74	0.78	1.11	11210	1436	1	0	1	0	0	logfile
✘	6MHZ	9124	2022-12-18	2018-09-18	4.1	4.03	—	4.0	0.007	1.18	0.0	0.06	11.43	0.01	1.258	9.19	0.39	10.0	89.9	0.1	-4.72	0.50	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7112	908	6	0	2	0	0	logfile
✔	6DNH	7112	2022-12-13	2018-06-06	3.4	3.52	—	3.5	0.010	1.08	1.0	0.06	10.53	0.01	1.258	11.14	1.10	8.5	91.2	0.3	-4.04	0.78	0.80	3.87	3.5	0.005	0.71	0.0	0.05	14.77	0.00	2.180	10.77	0.62	9.1	90.8	0.1	-1.73	1.69	0.78	0.86	3.29	13442	1670	5	7	3	0	0	logfile
✔	6BLY	7113	2022-12-12	2017-11-12	3.36	3.46	—	3.4	0.008	1.04	1.0	0.06	9.96	0.01	2.220	7.68	0.89	8.7	91.3	0.1	-4.00	0.76	0.79	3.81	3.4	0.004	0.67	0.0	0.05	14.70	0.00	2.065	10.74	0.22	6.7	93.2	0.1	-1.56	0.77	0.76	0.85	3.19	12263	1540	2	0	0	0	0	logfile
✔	6TMF	10519	2022-12-13	2019-12-04	2.8	2.90	—	2.8	0.017	1.11	2.0	0.07	15.95	0.01	1.750	5.02	0.73	9.5	90.0	0.5	-3.66	0.85	0.85	3.51	2.8	0.006	0.71	0.0	0.04	16.92	0.01	1.837	10.58	2.74	7.5	92.4	0.1	-0.69	2.23	0.88	0.90	2.82	65449	4172	35	1485	37	0	0	logfile
✔	6EZJ	3999	2022-12-18	2017-11-15	3.1	3.22	—	3.2	0.007	1.12	0.0	0.06	10.82	0.01	2.111	3.79	0.00	8.2	91.8	0.0	-5.02	0.68	0.77	3.52	3.2	0.007	0.98	0.0	0.06	15.69	0.01	1.908	10.83	0.84	10.2	89.5	0.2	-2.15	1.96	0.73	0.82	3.51	33600	4440	48	0	72	0	0	logfile
✔	6PBE	20291	2022-12-14	2019-06-13	3.78	4.21	—	4.1	0.006	1.02	0.0	0.05	16.23	0.01	2.248	4.10	1.18	8.2	91.8	0.0	-5.02	0.61	0.77	1.40	4.1	0.002	0.62	0.0	0.04	17.26	0.00	2.255	8.14	0.44	5.4	94.6	0.0	-1.11	1.91	0.64	0.75	1.29	19452	2416	8	0	8	0	0	logfile
✔	5XTE	6774	2022-12-19	2017-06-19	3.4	3.53	—	3.4	0.008	1.28	2.0	0.05	13.12	0.01	1.408	21.15	1.49	5.0	93.6	1.4	-0.90	0.77	0.79	2.93	3.4	0.003	0.73	0.0	0.04	15.73	0.00	2.036	13.17	0.45	4.2	95.5	0.2	0.42	1.35	0.79	0.85	2.40	34492	4222	35	0	26	0	0	logfile
✔	6DMR	7965	2022-12-14	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.77	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.88	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6BM0	7114	2022-12-12	2017-11-12	3.8	3.87	—	3.9	0.007	1.09	3.0	0.07	10.66	0.01	1.978	19.31	2.83	8.9	90.1	0.9	-3.90	0.77	0.77	2.59	3.9	0.003	0.76	0.0	0.05	14.93	0.00	2.166	13.67	0.45	7.0	92.8	0.2	-1.73	1.42	0.79	0.85	2.37	12244	1538	2	0	0	0	0	logfile
✔	6DMU	7966	2022-12-14	2018-06-05	4.0	4.11	—	4.0	0.006	0.99	0.0	0.06	11.62	0.01	2.348	1.90	0.19	5.3	94.7	0.0	-4.30	0.72	0.85	—	4.0	0.003	0.70	0.0	0.04	14.97	0.00	2.213	5.71	0.19	4.4	95.6	0.0	-0.75	0.59	0.72	0.85	—	19636	2428	8	0	4	0	0	logfile
✔	6NYB	0541	2022-12-12	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	7.08	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.003	0.77	0.0	0.04	13.92	0.00	1.951	12.41	0.00	3.4	96.6	0.0	0.26	2.60	0.78	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	6NPK	0472	2022-12-11	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.96	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.003	0.66	0.0	0.04	14.31	0.00	2.221	8.83	0.13	7.0	93.0	0.0	-0.12	1.23	0.61	0.81	2.24	7134	944	2	0	0	0	0	logfile
✔	6DBV	7851	2022-12-14	2018-05-03	4.29	4.43	—	4.3	0.006	0.85	0.0	0.05	22.47	0.01	1.293	23.30	0.06	10.8	89.1	0.2	-4.29	0.81	0.78	—	4.3	0.004	0.75	0.0	0.04	21.40	0.00	1.780	18.67	0.00	6.3	93.6	0.1	-1.06	0.93	0.83	0.82	—	19958	1939	10	222	6	0	0	logfile
✔	5TTP	8467	2022-12-11	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.69	—	5616	1138	2	0	0	0	0	logfile
✔	6PBF	20292	2022-12-14	2019-06-13	4.2	4.50	—	4.5	0.009	1.02	0.0	0.05	15.55	0.01	2.300	5.10	0.22	6.8	93.2	0.0	-4.37	0.54	0.73	—	4.5	0.003	0.69	0.0	0.04	14.56	0.00	2.214	9.82	0.05	6.4	93.6	0.0	-0.61	1.30	0.57	0.78	—	18484	2392	7	0	4	0	0	logfile
✔	6MHU	9118	2022-12-12	2018-09-18	4.0	3.93	—	3.9	0.010	1.24	0.0	0.24	12.04	0.01	2.267	6.82	0.76	10.9	89.1	0.0	-4.84	0.53	0.72	—	3.9	0.003	0.94	0.0	0.10	16.28	0.00	2.162	15.37	0.54	7.1	92.9	0.0	-1.56	1.50	0.53	0.73	—	8810	1112	5	0	1	0	0	logfile
✔	6R91	4765	2022-12-20	2019-04-02	4.1	5.15	—	5.0	0.006	1.01	0.0	0.05	23.74	0.01	2.021	3.55	0.65	4.6	95.0	0.5	-0.83	0.64	0.52	—	5.0	0.004	0.68	0.0	0.04	23.87	0.00	1.816	14.13	0.00	7.1	92.8	0.1	-1.19	0.98	0.67	0.59	—	40540	1969	12	290	0	0	19063	logfile

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