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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5W65 | 8775 | 2022-12-22 | 2017-06-16 | 4.3 | 4.07 | — | 3.9 | 0.009 | 1.65 | 79.0 | 0.10 | 14.73 | 0.01 | 1.089 | 88.99 | 4.61 | 8.9 | 86.3 | 4.8 | -3.52 | 0.74 | 0.65 | — | 3.9 | 0.005 | 0.88 | 1.0 | 0.05 | 15.28 | 0.01 | 1.911 | 21.59 | 0.04 | 8.9 | 90.3 | 0.8 | -0.95 | 3.12 | 0.83 | 0.80 | — | 47308 | 5599 | 26 | 105 | 60 | 0 | 0 | logfile |
✔ | 3JBY | 6488 | 2022-12-18 | 2015-10-22 | 3.7 | 3.78 | — | 3.8 | 0.015 | 1.57 | 0.0 | 0.07 | 20.72 | 0.01 | 2.015 | 24.87 | 5.74 | 4.2 | 95.5 | 0.3 | -3.60 | 0.77 | 0.83 | 2.24 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 21.29 | 0.00 | 2.177 | 15.77 | 0.63 | 4.3 | 95.4 | 0.3 | -0.14 | 0.86 | 0.75 | 0.83 | 1.47 | 16846 | 1802 | 12 | 124 | 6 | 0 | 0 | logfile |
✔ | 6KLC | 0706 | 2022-12-12 | 2019-07-30 | 3.9 | 3.97 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.24 | 0.00 | 2.198 | 11.06 | 0.64 | 9.3 | 90.5 | 0.2 | -3.27 | 0.73 | 0.77 | 1.53 | 3.9 | 0.004 | 0.81 | 0.0 | 0.05 | 16.14 | 0.00 | 2.094 | 13.94 | 0.56 | 10.2 | 89.8 | 0.1 | -0.58 | 1.54 | 0.74 | 0.78 | 1.11 | 11210 | 1436 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6MHZ | 9124 | 2022-12-18 | 2018-09-18 | 4.1 | 4.03 | — | 4.0 | 0.007 | 1.18 | 0.0 | 0.06 | 11.43 | 0.01 | 1.258 | 9.19 | 0.39 | 10.0 | 89.9 | 0.1 | -4.72 | 0.50 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7112 | 908 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6DNH | 7112 | 2022-12-13 | 2018-06-06 | 3.4 | 3.52 | — | 3.5 | 0.010 | 1.08 | 1.0 | 0.06 | 10.53 | 0.01 | 1.258 | 11.14 | 1.10 | 8.5 | 91.2 | 0.3 | -4.04 | 0.78 | 0.80 | 3.87 | 3.5 | 0.005 | 0.71 | 0.0 | 0.05 | 14.77 | 0.00 | 2.180 | 10.77 | 0.62 | 9.1 | 90.8 | 0.1 | -1.73 | 1.69 | 0.78 | 0.86 | 3.29 | 13442 | 1670 | 5 | 7 | 3 | 0 | 0 | logfile |
✔ | 6BLY | 7113 | 2022-12-12 | 2017-11-12 | 3.36 | 3.46 | — | 3.4 | 0.008 | 1.04 | 1.0 | 0.06 | 9.96 | 0.01 | 2.220 | 7.68 | 0.89 | 8.7 | 91.3 | 0.1 | -4.00 | 0.76 | 0.79 | 3.81 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 14.70 | 0.00 | 2.065 | 10.74 | 0.22 | 6.7 | 93.2 | 0.1 | -1.56 | 0.77 | 0.76 | 0.85 | 3.19 | 12263 | 1540 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TMF | 10519 | 2022-12-13 | 2019-12-04 | 2.8 | 2.90 | — | 2.8 | 0.017 | 1.11 | 2.0 | 0.07 | 15.95 | 0.01 | 1.750 | 5.02 | 0.73 | 9.5 | 90.0 | 0.5 | -3.66 | 0.85 | 0.85 | 3.51 | 2.8 | 0.006 | 0.71 | 0.0 | 0.04 | 16.92 | 0.01 | 1.837 | 10.58 | 2.74 | 7.5 | 92.4 | 0.1 | -0.69 | 2.23 | 0.88 | 0.90 | 2.82 | 65449 | 4172 | 35 | 1485 | 37 | 0 | 0 | logfile |
✔ | 6EZJ | 3999 | 2022-12-18 | 2017-11-15 | 3.1 | 3.22 | — | 3.2 | 0.007 | 1.12 | 0.0 | 0.06 | 10.82 | 0.01 | 2.111 | 3.79 | 0.00 | 8.2 | 91.8 | 0.0 | -5.02 | 0.68 | 0.77 | 3.52 | 3.2 | 0.007 | 0.98 | 0.0 | 0.06 | 15.69 | 0.01 | 1.908 | 10.83 | 0.84 | 10.2 | 89.5 | 0.2 | -2.15 | 1.96 | 0.73 | 0.82 | 3.51 | 33600 | 4440 | 48 | 0 | 72 | 0 | 0 | logfile |
✔ | 6PBE | 20291 | 2022-12-14 | 2019-06-13 | 3.78 | 4.21 | — | 4.1 | 0.006 | 1.02 | 0.0 | 0.05 | 16.23 | 0.01 | 2.248 | 4.10 | 1.18 | 8.2 | 91.8 | 0.0 | -5.02 | 0.61 | 0.77 | 1.40 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 17.26 | 0.00 | 2.255 | 8.14 | 0.44 | 5.4 | 94.6 | 0.0 | -1.11 | 1.91 | 0.64 | 0.75 | 1.29 | 19452 | 2416 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5XTE | 6774 | 2022-12-19 | 2017-06-19 | 3.4 | 3.53 | — | 3.4 | 0.008 | 1.28 | 2.0 | 0.05 | 13.12 | 0.01 | 1.408 | 21.15 | 1.49 | 5.0 | 93.6 | 1.4 | -0.90 | 0.77 | 0.79 | 2.93 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 15.73 | 0.00 | 2.036 | 13.17 | 0.45 | 4.2 | 95.5 | 0.2 | 0.42 | 1.35 | 0.79 | 0.85 | 2.40 | 34492 | 4222 | 35 | 0 | 26 | 0 | 0 | logfile |
✔ | 6DMR | 7965 | 2022-12-14 | 2018-06-05 | 3.9 | 4.25 | — | 4.2 | 0.005 | 0.91 | 0.0 | 0.05 | 10.34 | 0.01 | 2.280 | 3.77 | 0.00 | 4.2 | 95.8 | 0.0 | -4.22 | 0.62 | 0.70 | 1.82 | 4.1 | 0.002 | 0.62 | 0.0 | 0.04 | 14.97 | 0.00 | 2.278 | 6.88 | 0.10 | 3.1 | 96.9 | 0.0 | -0.45 | 1.74 | 0.75 | 0.87 | 1.48 | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BM0 | 7114 | 2022-12-12 | 2017-11-12 | 3.8 | 3.87 | — | 3.9 | 0.007 | 1.09 | 3.0 | 0.07 | 10.66 | 0.01 | 1.978 | 19.31 | 2.83 | 8.9 | 90.1 | 0.9 | -3.90 | 0.77 | 0.77 | 2.59 | 3.9 | 0.003 | 0.76 | 0.0 | 0.05 | 14.93 | 0.00 | 2.166 | 13.67 | 0.45 | 7.0 | 92.8 | 0.2 | -1.73 | 1.42 | 0.79 | 0.85 | 2.37 | 12244 | 1538 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DMU | 7966 | 2022-12-14 | 2018-06-05 | 4.0 | 4.11 | — | 4.0 | 0.006 | 0.99 | 0.0 | 0.06 | 11.62 | 0.01 | 2.348 | 1.90 | 0.19 | 5.3 | 94.7 | 0.0 | -4.30 | 0.72 | 0.85 | — | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 14.97 | 0.00 | 2.213 | 5.71 | 0.19 | 4.4 | 95.6 | 0.0 | -0.75 | 0.59 | 0.72 | 0.85 | — | 19636 | 2428 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6NYB | 0541 | 2022-12-12 | 2019-02-11 | 4.1 | 4.15 | — | 4.0 | 0.014 | 1.76 | 3.0 | 0.09 | 14.33 | 0.00 | 2.070 | 7.08 | 3.66 | 5.4 | 94.4 | 0.2 | -3.02 | 0.75 | 0.74 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 1.951 | 12.41 | 0.00 | 3.4 | 96.6 | 0.0 | 0.26 | 2.60 | 0.78 | 0.80 | — | 8842 | 1097 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NPK | 0472 | 2022-12-11 | 2019-01-17 | 3.6 | 3.66 | — | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 13.02 | 0.01 | 2.320 | 3.96 | 6.13 | 6.6 | 93.4 | 0.0 | -5.05 | 0.58 | 0.80 | 2.02 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.31 | 0.00 | 2.221 | 8.83 | 0.13 | 7.0 | 93.0 | 0.0 | -0.12 | 1.23 | 0.61 | 0.81 | 2.24 | 7134 | 944 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DBV | 7851 | 2022-12-14 | 2018-05-03 | 4.29 | 4.43 | — | 4.3 | 0.006 | 0.85 | 0.0 | 0.05 | 22.47 | 0.01 | 1.293 | 23.30 | 0.06 | 10.8 | 89.1 | 0.2 | -4.29 | 0.81 | 0.78 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.04 | 21.40 | 0.00 | 1.780 | 18.67 | 0.00 | 6.3 | 93.6 | 0.1 | -1.06 | 0.93 | 0.83 | 0.82 | — | 19958 | 1939 | 10 | 222 | 6 | 0 | 0 | logfile |
✔ | 5TTP | 8467 | 2022-12-11 | 2016-11-04 | 4.8 | 4.88 | — | 4.5 | 0.006 | 1.36 | 0.0 | 0.06 | 11.70 | 0.01 | 2.038 | 24.92 | 0.00 | 14.1 | 85.2 | 0.7 | -5.87 | 0.61 | 0.60 | — | 4.6 | 0.002 | 0.75 | 0.0 | 0.04 | 4.87 | 0.00 | 2.268 | 5.23 | 0.00 | 12.2 | 87.7 | 0.2 | 0.48 | 2.21 | 0.67 | 0.69 | — | 5616 | 1138 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PBF | 20292 | 2022-12-14 | 2019-06-13 | 4.2 | 4.50 | — | 4.5 | 0.009 | 1.02 | 0.0 | 0.05 | 15.55 | 0.01 | 2.300 | 5.10 | 0.22 | 6.8 | 93.2 | 0.0 | -4.37 | 0.54 | 0.73 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.56 | 0.00 | 2.214 | 9.82 | 0.05 | 6.4 | 93.6 | 0.0 | -0.61 | 1.30 | 0.57 | 0.78 | — | 18484 | 2392 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 6MHU | 9118 | 2022-12-12 | 2018-09-18 | 4.0 | 3.93 | — | 3.9 | 0.010 | 1.24 | 0.0 | 0.24 | 12.04 | 0.01 | 2.267 | 6.82 | 0.76 | 10.9 | 89.1 | 0.0 | -4.84 | 0.53 | 0.72 | — | 3.9 | 0.003 | 0.94 | 0.0 | 0.10 | 16.28 | 0.00 | 2.162 | 15.37 | 0.54 | 7.1 | 92.9 | 0.0 | -1.56 | 1.50 | 0.53 | 0.73 | — | 8810 | 1112 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6R91 | 4765 | 2022-12-20 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.74 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | 5.0 | 0.004 | 0.68 | 0.0 | 0.04 | 23.87 | 0.00 | 1.816 | 14.13 | 0.00 | 7.1 | 92.8 | 0.1 | -1.19 | 0.98 | 0.67 | 0.59 | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |