Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BW4	30226	2022-04-04	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.006	0.82	0.0	0.05	16.63	0.01	2.176	15.60	0.63	5.1	94.8	0.1	-0.84	1.08	0.78	0.77	1.65	8605	1078	5	0	2	0	0	logfile
✔	7BST	30166	2022-04-09	2020-03-31	4.37	4.53	—	4.3	0.004	1.02	1.0	0.06	11.11	0.01	2.232	7.20	0.56	10.3	89.7	0.0	-4.41	0.86	0.72	—	4.3	0.002	0.70	0.0	0.04	12.19	0.00	2.161	12.57	0.00	7.8	92.2	0.0	-1.17	1.60	0.88	0.75	—	28266	3508	7	0	0	0	0	logfile
✔	6U6D	20663	2022-04-06	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.003	0.54	0.0	0.05	15.59	0.00	2.142	6.80	0.22	3.3	96.7	0.0	-0.81	0.47	0.80	0.84	2.03	16770	2156	10	0	2	0	0	logfile
✔	6L4S	0833	2022-04-04	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	6Z16	11027	2022-04-07	2020-05-12	2.98	2.98	—	3.1	0.008	1.13	0.0	0.06	12.51	0.01	2.238	3.49	0.10	4.5	95.5	0.0	-2.64	0.73	0.83	3.55	3.0	0.005	0.73	0.0	0.04	15.75	0.01	2.061	10.88	2.27	4.7	95.3	0.0	0.84	1.31	0.75	0.83	2.85	30250	3744	24	0	30	0	0	logfile
✔	6VX6	21431	2022-04-05	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.004	0.64	0.0	0.04	16.34	0.00	2.054	7.91	1.57	1.5	98.5	0.0	0.59	0.98	0.78	0.89	3.36	15061	1830	10	0	6	0	0	logfile
✔	6WCC	21606	2022-04-05	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.003	0.52	0.0	0.03	15.73	0.00	2.212	7.06	0.32	2.6	97.4	0.0	4.20	0.73	0.52	0.78	1.78	11629	734	6	0	5	12	5908	logfile
✔	6X5i	22051	2022-04-04	2020-05-26	4.3	4.27	—	4.0	0.061	3.24	210.0	0.20	32.42	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.010	1.61	210.0	0.14	27.26	0.00	1.233	70.93	0.00	0.0	0.0	0.0	—	3.50	0.68	0.73	—	4480	70	70	0	280	0	0	logfile
✔	6WCA	21604	2022-04-05	2020-03-30	3.03	3.15	—	3.1	0.003	0.61	0.0	0.04	15.59	0.00	2.102	8.00	1.94	3.0	97.0	0.0	-0.15	0.54	0.77	2.04	3.2	0.003	0.55	0.0	0.04	15.80	0.00	1.829	6.37	0.00	2.3	97.7	0.0	3.33	0.64	0.54	0.79	2.03	11645	734	6	0	5	26	5910	logfile
✔	6TEB	10479	2022-04-05	2019-11-11	4.14	4.24	—	4.1	0.007	1.14	0.0	0.07	13.67	0.01	2.286	20.34	1.20	16.7	83.1	0.2	-5.28	0.73	0.75	—	4.1	0.004	0.95	0.0	0.05	14.17	0.01	2.146	25.55	0.32	11.0	89.0	0.0	-3.58	1.91	0.75	0.77	—	12168	1584	12	0	0	0	0	logfile
✔	6WUM	21916	2022-04-05	2020-05-04	3.6	3.74	—	3.7	0.008	0.92	0.0	0.05	13.76	0.01	2.086	10.52	1.01	16.4	83.5	0.1	-4.27	0.75	0.82	2.44	3.6	0.005	0.78	0.0	0.04	15.09	0.01	2.219	9.57	0.41	10.9	89.1	0.1	-1.95	0.55	0.74	0.80	1.72	16414	2172	6	0	0	0	0	logfile
✔	6TSV	10566	2022-04-07	2019-12-21	3.78	3.86	—	3.8	0.011	1.20	0.0	0.08	11.73	0.01	2.334	11.82	0.00	10.6	89.4	0.0	-4.47	0.82	0.85	2.68	3.8	0.005	0.95	0.0	0.05	16.80	0.00	2.107	23.57	1.40	9.7	90.3	0.0	-2.84	1.69	0.84	0.86	1.00	23832	3216	24	0	0	0	0	logfile
✔	6TG9	10495	2022-04-07	2019-11-15	3.24	3.34	—	3.3	0.016	1.33	0.0	0.06	14.65	0.00	1.847	11.53	0.62	7.8	92.0	0.2	-4.02	0.80	0.78	3.11	3.3	0.008	0.92	0.0	0.04	16.37	0.01	2.083	11.45	0.04	6.0	93.9	0.1	-1.30	1.25	0.83	0.84	2.94	25412	3318	14	0	26	0	0	logfile
✔	6LCR	0873	2022-04-05	2019-11-19	3.4	3.53	—	3.5	0.009	0.96	0.0	0.07	15.47	0.01	1.914	20.54	0.49	11.6	88.2	0.2	-4.30	0.69	0.79	2.44	3.4	0.003	0.69	0.0	0.04	16.46	0.01	1.939	13.75	0.33	7.3	92.6	0.1	-1.72	1.17	0.69	0.79	1.49	11561	1420	8	0	14	0	0	logfile
✔	6WUN	21917	2022-04-05	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.83	0.0	0.04	14.96	0.00	2.101	13.17	0.09	17.2	82.6	0.2	-4.00	0.56	0.68	0.80	1.50	10082	1326	4	0	0	0	0	logfile
✔	6UR8	20857	2022-04-05	2019-10-22	3.71	3.88	—	3.9	0.008	0.79	0.0	0.05	13.48	0.00	1.970	10.98	0.06	9.6	90.4	0.0	-4.52	0.72	0.78	1.62	3.9	0.005	0.77	0.0	0.04	16.09	0.01	2.102	7.30	0.42	5.1	94.9	0.0	-0.62	1.43	0.76	0.83	1.54	14880	1798	10	0	13	0	0	logfile
✔	6U5P	20652	2022-04-05	2019-08-28	3.3	3.44	—	3.4	0.006	0.75	0.0	0.05	14.37	0.00	2.236	3.96	0.43	4.4	95.6	0.0	-3.37	0.70	0.83	2.56	3.4	0.003	0.52	0.0	0.05	16.25	0.00	2.070	5.59	0.36	2.9	97.1	0.0	0.03	0.46	0.66	0.83	2.12	13308	1776	24	0	24	8	0	logfile
✔	6LCP	0872	2022-04-05	2019-11-19	3.48	3.62	—	3.5	0.009	0.95	5.0	0.07	15.52	0.01	1.795	17.99	0.99	9.8	90.0	0.2	-4.12	0.72	0.81	2.71	3.5	0.011	0.99	1.0	0.04	16.91	0.01	1.869	12.82	0.46	7.0	92.8	0.1	-1.45	1.20	0.72	0.82	1.94	12421	1516	8	0	18	0	0	logfile
✔	6U5R	20653	2022-04-05	2019-08-28	3.6	3.71	—	3.6	0.011	0.96	0.0	0.06	14.54	0.01	1.768	5.09	0.23	6.2	93.8	0.0	-4.18	0.73	0.85	2.03	3.7	0.003	0.58	0.0	0.05	16.88	0.00	2.241	7.11	0.17	2.8	97.2	0.0	0.17	0.58	0.70	0.83	0.77	16516	2156	24	0	8	8	0	logfile
✔	6LY8	30014	2022-04-07	2020-02-13	3.5	3.61	—	3.5	0.006	0.68	0.0	0.05	15.32	0.01	1.805	6.75	11.59	11.1	88.9	0.0	-4.29	0.77	0.85	2.29	3.5	0.004	0.66	0.0	0.04	15.96	0.01	2.129	6.34	0.46	8.2	91.7	0.0	-1.32	0.57	0.77	0.85	1.71	26631	3418	9	0	1	0	0	logfile

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