Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ToY	26041	2023-04-27	2022-01-24	3.53	3.95	—	3.5	0.014	1.77	4.0	0.10	13.68	0.01	2.517	0.08	1.50	6.8	92.8	0.4	-1.10	0.85	0.84	2.97	3.5	0.003	0.61	0.0	0.04	14.23	0.00	2.190	5.85	0.26	4.3	95.6	0.1	0.35	0.49	0.85	0.85	2.13	24673	3049	20	0	61	0	0	logfile
✔	7LYQ	23599	2023-04-26	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	1.0	0.10	12.83	0.01	2.521	0.30	0.43	5.2	94.3	0.4	-0.83	0.77	0.83	3.22	3.5	0.005	0.63	0.0	0.04	14.34	0.00	2.202	5.36	0.24	3.7	96.3	0.0	0.32	1.24	0.79	0.86	2.66	23641	2985	6	0	38	0	0	logfile
✔	7SV7	25445	2023-04-21	2021-11-18	3.8	3.26	—	3.9	0.004	1.02	0.0	0.04	12.31	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.002	0.55	0.0	0.04	15.41	0.00	1.999	5.52	0.30	2.5	97.5	0.0	1.05	0.59	0.61	0.81	1.47	9673	1173	3	0	32	0	0	logfile
✘	7TLB	25986	2023-04-26	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22806	2916	3	0	0	0	0	logfile
✔	7KEC	22838	2023-04-26	2020-10-10	3.84	4.76	—	3.9	0.013	1.81	0.0	0.09	14.51	0.02	2.280	0.83	2.39	9.0	89.9	1.0	-2.05	0.74	0.62	0.75	3.9	0.005	0.74	0.0	0.04	14.52	0.00	2.075	17.12	0.49	7.0	92.9	0.1	-0.91	0.62	0.86	0.80	0.83	22337	2875	18	0	57	0	0	logfile
✔	7TPF	26053	2023-04-26	2022-01-25	3.4	3.74	—	3.4	0.013	1.76	3.0	0.09	12.86	0.01	2.518	0.04	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.003	0.61	0.0	0.04	13.55	0.00	2.187	4.30	0.17	4.2	95.7	0.1	0.28	0.45	0.85	0.87	3.14	23199	2983	18	0	58	0	0	logfile
✔	7ToU	26038	2023-04-27	2022-01-24	3.24	3.49	—	3.3	0.014	1.82	8.0	0.11	13.56	0.01	2.517	0.18	1.20	6.2	93.2	0.7	-1.00	0.84	0.85	3.52	3.3	0.003	0.60	0.0	0.04	14.04	0.00	2.134	5.38	0.04	4.2	95.7	0.0	0.51	0.57	0.85	0.87	2.72	24687	3050	20	0	61	0	0	logfile
✔	7L1V	23119	2023-04-21	2020-12-15	3.0	3.37	—	3.3	0.007	0.91	0.0	0.06	12.65	0.01	2.306	3.23	0.30	2.8	97.2	0.0	-2.91	0.71	0.86	4.16	3.3	0.003	0.56	0.0	0.04	15.41	0.00	2.230	6.79	2.02	2.3	97.7	0.0	0.66	0.93	0.73	0.88	3.17	9606	1253	7	0	1	0	0	logfile
✔	6PM0	20382	2023-04-23	2019-07-01	3.1	3.53	—	3.3	0.007	1.03	0.0	0.06	9.72	0.01	2.298	5.10	0.00	4.1	95.9	0.0	-4.55	0.78	0.84	4.35	3.3	0.003	0.67	0.0	0.04	14.42	0.00	2.110	10.24	0.53	3.9	96.1	0.0	-0.36	0.72	0.77	0.89	3.90	14080	1730	15	0	20	0	0	logfile
✔	7PV2	13664	2023-04-27	2021-10-01	3.2	3.39	—	3.3	0.011	0.71	0.0	0.08	14.85	0.00	1.971	4.86	0.00	3.9	96.1	0.0	-3.84	0.75	0.82	3.34	3.3	0.005	0.62	0.0	0.04	16.71	0.00	2.164	6.26	0.22	3.8	96.2	0.0	-0.11	0.60	0.76	0.87	2.77	25440	3084	12	0	0	0	0	logfile
✔	7SK5	25173	2023-04-23	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.93	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.002	0.54	0.0	0.04	15.66	0.00	1.979	10.91	0.63	4.9	95.1	0.0	-0.06	0.47	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	7TYM	26185	2023-04-22	2022-02-13	3.4	3.43	—	3.5	0.002	0.54	0.0	0.04	15.94	0.00	2.175	8.12	0.00	7.1	92.8	0.1	-1.35	0.73	0.81	2.62	3.4	0.003	0.57	0.0	0.04	16.28	0.00	2.159	8.66	0.15	8.0	92.0	0.0	-1.76	1.12	0.73	0.82	3.21	12112	1542	2	0	0	0	0	logfile
✔	7KE7	22833	2023-04-26	2020-10-10	3.32	3.94	—	3.7	0.014	1.74	5.0	0.10	13.16	0.02	2.502	0.38	0.08	7.5	92.2	0.3	-1.34	0.75	0.69	2.06	3.7	0.005	0.72	0.0	0.05	14.48	0.00	2.124	10.07	0.31	5.3	94.7	0.0	-0.44	0.66	0.81	0.77	1.73	23688	2916	21	0	63	0	0	logfile
✔	7ToZ	26042	2023-04-27	2022-01-24	4.07	4.80	—	4.0	0.014	1.84	11.0	0.10	15.16	0.02	2.509	0.68	2.87	8.7	90.4	0.8	-1.96	0.85	0.79	—	4.0	0.003	0.70	0.0	0.04	13.43	0.00	2.095	13.67	0.00	7.1	92.8	0.1	-0.56	0.58	0.85	0.80	—	24470	3026	20	0	60	0	0	logfile
✔	7SK8	25176	2023-04-22	2021-10-19	3.3	3.55	—	3.5	0.009	0.88	0.0	0.22	14.30	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.48	0.0	0.04	15.06	0.00	2.153	4.37	0.00	5.2	94.8	0.0	0.17	0.29	0.69	0.83	3.37	13389	835	7	0	8	0	6513	logfile
✔	7LWQ	23554	2023-04-25	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.84	0.01	2.519	0.05	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.002	0.60	0.0	0.04	15.04	0.00	2.183	6.77	0.24	3.8	96.2	0.0	0.36	1.27	0.77	0.80	2.05	19273	2425	7	0	29	0	0	logfile
✔	7KDJ	22824	2023-04-26	2020-10-08	3.49	4.11	—	3.8	0.013	1.69	1.0	0.10	12.36	0.01	1.477	0.25	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.002	0.59	0.0	0.04	13.66	0.00	2.204	5.88	0.13	3.6	96.4	0.0	0.57	0.54	0.84	0.84	2.15	22365	2875	18	0	59	0	0	logfile
✔	7RBT	24401	2023-04-22	2021-07-06	3.08	2.86	—	2.9	0.007	0.76	0.0	0.05	14.73	0.00	2.093	18.60	0.70	9.1	90.9	0.0	-2.82	0.59	0.76	2.17	3.0	0.004	0.75	0.0	0.04	16.65	0.00	2.134	12.58	0.26	4.4	95.6	0.0	-0.87	0.49	0.59	0.77	2.09	10881	1386	7	0	1	0	0	logfile
✔	6SE6	10152	2023-04-22	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.65	0.0	0.03	28.61	0.00	2.082	12.77	0.47	1.5	98.5	0.0	1.17	0.58	0.86	0.83	1.17	12068	771	11	290	0	0	0	logfile
✔	7Z3A	14474	2023-04-26	2022-03-02	3.95	4.30	—	4.1	0.024	1.92	0.0	0.16	10.35	0.01	1.982	1.57	0.41	2.7	97.3	0.0	0.25	0.80	0.79	1.88	4.1	0.003	0.90	0.0	0.05	14.91	0.00	2.140	12.52	0.33	5.6	94.4	0.0	-0.21	1.50	0.81	0.83	1.39	24000	2793	69	0	156	0	0	logfile

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