Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XA3	33086	2023-04-21	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.17	0.00	2.192	9.41	2.38	3.4	96.6	0.0	1.61	1.17	0.78	0.78	2.75	9591	1220	6	0	0	0	0	logfile
✔	6Bo5	7119	2023-04-24	2017-11-18	3.6	3.71	—	3.6	0.005	1.08	0.0	0.05	12.89	0.01	2.277	11.47	1.84	9.1	90.5	0.4	-5.44	0.66	0.72	1.16	3.6	0.004	0.81	0.0	0.04	14.72	0.00	2.166	16.85	0.11	8.8	91.2	0.0	-1.26	1.45	0.66	0.72	0.86	17236	2228	4	0	0	0	0	logfile
✔	6NPJ	0471	2023-04-20	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.07	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.71	0.0	0.04	17.43	0.00	2.278	10.04	0.30	6.1	93.9	0.0	-2.01	0.85	0.63	0.78	2.22	6186	768	2	0	0	0	0	logfile
✘	6HiN	0225	2023-04-23	2018-08-30	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	20	0	30	0	0	logfile
✔	7LXN	23572	2023-04-25	2021-03-04	3.85	4.32	—	4.1	0.020	1.79	3.0	0.11	10.20	0.01	2.257	1.91	0.52	1.3	98.6	0.1	0.84	0.81	0.80	2.22	4.1	0.005	0.80	0.0	0.05	13.92	0.00	2.050	12.93	0.57	4.0	96.0	0.0	0.15	1.33	0.82	0.81	2.51	20820	2373	60	0	159	0	0	logfile
✔	7N9Y	24264	2023-04-20	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6GTD	0062	2023-04-20	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.008	0.99	0.0	0.07	20.73	0.00	1.909	27.42	0.00	22.2	77.8	0.0	-3.42	0.97	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✘	7EJ8	31156	2023-04-20	2021-04-01	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1100	6	0	1	0	0	logfile
✔	6GTE	0063	2023-04-21	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	16.15	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.003	0.65	0.0	0.04	16.34	0.00	2.190	13.00	0.00	7.8	92.2	0.0	-2.93	0.83	0.73	0.69	—	10872	1274	4	67	0	0	0	logfile
✔	6D7W	7826	2023-04-21	2018-04-25	3.8	3.93	—	3.9	0.007	1.21	4.0	0.07	11.66	0.01	2.210	13.57	2.73	6.7	93.3	0.0	-3.65	0.58	0.77	1.57	3.8	0.004	0.76	0.0	0.05	15.72	0.00	2.149	12.39	0.63	7.3	92.7	0.0	-0.22	1.35	0.59	0.78	1.46	8946	1087	5	0	1	0	0	logfile
✔	6GTC	0061	2023-04-22	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	15.72	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.69	0.0	0.04	18.32	0.00	2.033	13.75	0.17	7.9	92.1	0.0	-2.79	1.14	0.71	0.69	1.56	11931	1280	4	65	0	0	0	logfile
✔	6oiJ	20078	2023-04-21	2019-04-09	3.3	3.38	—	3.3	0.006	0.94	0.0	0.06	15.29	0.01	2.236	5.95	0.77	4.9	95.1	0.0	-3.70	0.68	0.81	2.83	3.3	0.004	0.68	0.0	0.04	16.46	0.00	2.107	12.01	0.11	3.4	96.6	0.0	-0.14	0.50	0.69	0.84	2.56	8877	1152	6	0	3	0	0	logfile
✔	7X6L	33023	2023-04-25	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.47	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.1	0.003	0.81	0.0	0.05	13.64	0.00	2.090	18.01	0.50	4.0	95.9	0.1	-1.15	0.98	0.67	0.61	1.26	21486	2781	12	0	0	0	0	logfile
✔	6oKR	20102	2023-04-24	2019-04-15	4.2	4.37	—	4.3	0.007	1.04	0.0	0.06	15.82	0.01	2.262	9.48	0.58	15.3	84.7	0.0	-5.16	0.69	0.83	—	4.3	0.003	0.71	0.0	0.05	14.65	0.00	2.140	14.04	0.24	13.6	86.4	0.0	-3.37	0.49	0.69	0.82	—	18613	2394	7	0	0	0	0	logfile
✔	7oG5	12878	2023-04-23	2021-05-06	3.37	3.57	—	3.6	0.010	0.95	0.0	0.05	14.71	0.01	2.021	19.65	0.00	10.1	89.9	0.0	-1.60	0.63	0.82	2.97	3.6	0.004	0.77	0.0	0.04	16.79	0.01	2.084	16.74	0.72	7.2	92.8	0.0	0.38	0.59	0.60	0.81	1.85	15444	1892	12	0	0	0	0	logfile
✔	6PB1	20285	2023-04-21	2019-06-12	2.8	3.39	—	3.4	0.003	0.79	0.0	0.06	8.98	0.01	2.288	4.32	0.00	1.9	98.1	0.0	-2.93	0.56	0.75	2.79	3.4	0.005	0.64	0.0	0.04	15.15	0.00	2.164	8.47	2.36	3.0	97.0	0.0	0.23	1.27	0.54	0.78	2.92	8785	1069	7	0	9	0	0	logfile
✔	6Q2N	20575	2023-04-22	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.01	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.81	0.0	0.05	11.58	0.01	2.192	17.37	0.00	9.9	90.1	0.0	-2.55	0.96	0.61	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	6oiK	20079	2023-04-22	2019-04-09	3.6	3.73	—	3.6	0.009	1.06	0.0	0.06	14.77	0.01	1.986	8.48	1.04	6.4	93.6	0.0	-3.68	0.70	0.78	2.74	3.6	0.003	0.75	0.0	0.05	15.55	0.00	2.042	13.60	1.04	3.3	96.7	0.0	-0.43	0.62	0.70	0.82	1.75	8496	1125	6	0	2	0	0	logfile
✔	6Y92	10732	2023-04-23	2020-03-06	4.73	5.03	—	4.9	0.006	0.77	0.0	0.06	14.07	0.00	2.265	7.43	0.77	3.7	96.3	0.0	-0.68	0.59	0.71	—	4.9	0.003	0.72	0.0	0.04	13.87	0.00	2.193	11.01	0.10	5.3	94.7	0.0	-1.46	0.68	0.62	0.77	—	9497	1210	8	0	6	0	0	logfile
✔	7U2K	26313	2023-04-20	2022-02-24	3.3	3.77	—	3.5	0.010	0.76	0.0	0.05	14.70	0.00	2.198	6.93	0.43	6.0	94.0	0.0	-1.90	0.83	0.89	3.29	3.6	0.003	0.59	0.0	0.04	15.58	0.00	2.189	6.17	0.14	3.8	96.2	0.0	0.52	0.48	0.78	0.85	1.59	6755	889	5	0	1	0	0	logfile

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