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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LQH | 23486 | 2023-12-09 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SAR | 24954 | 2023-12-09 | 2021-09-23 | 3.2 | 3.05 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.07 | 13.63 | 0.01 | 2.157 | 15.13 | 0.00 | 11.3 | 88.7 | 0.0 | -3.51 | 0.50 | 0.76 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11420 | 1350 | 20 | 0 | 40 | 0 | 0 | logfile |
✔ | 7U14 | 26277 | 2023-12-07 | 2022-02-19 | 4.5 | 4.22 | — | 4.6 | 0.006 | 0.94 | 0.0 | 0.07 | 19.58 | 0.00 | 2.369 | 21.08 | 6.30 | 10.5 | 89.5 | 0.0 | -3.07 | 0.30 | 0.52 | — | 4.4 | 0.004 | 0.85 | 0.0 | 0.06 | 15.64 | 0.00 | 2.124 | 14.83 | 0.00 | 11.0 | 89.0 | 0.0 | -3.78 | 1.57 | 0.33 | 0.61 | — | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WL0 | 21814 | 2023-12-09 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.04 | 14.65 | 0.00 | 2.062 | 21.77 | 0.18 | 0.1 | 99.9 | 0.0 | 0.14 | 1.67 | 0.79 | 0.86 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D9U | 30621 | 2023-12-08 | 2020-10-14 | 3.8 | 3.97 | — | 3.8 | 0.004 | 0.59 | 0.0 | 0.04 | 12.32 | 0.00 | 2.187 | 8.47 | 0.12 | 3.4 | 96.5 | 0.1 | -2.11 | 0.81 | 0.82 | 2.52 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 14.34 | 0.00 | 1.957 | 11.02 | 0.00 | 3.5 | 96.5 | 0.0 | -0.36 | 0.61 | 0.83 | 0.83 | 1.98 | 8190 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8AMD | 15524 | 2023-12-09 | 2022-08-03 | 3.9 | 4.48 | — | 4.4 | 0.006 | 0.96 | 0.0 | 0.06 | 17.83 | 0.01 | 2.298 | 5.05 | 0.87 | 10.7 | 89.3 | 0.0 | -5.17 | 0.51 | 0.80 | 1.43 | 4.4 | 0.004 | 0.71 | 0.0 | 0.04 | 18.98 | 0.00 | 2.183 | 11.93 | 0.58 | 9.0 | 91.0 | 0.0 | -2.78 | 0.60 | 0.51 | 0.79 | 1.52 | 10377 | 1332 | 9 | 12 | 4 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2023-12-07 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 2.9 | 0.005 | 0.72 | 0.0 | 0.06 | 17.25 | 0.00 | 2.432 | 8.29 | 3.25 | 20.3 | 79.7 | 0.0 | -4.30 | 0.33 | 0.44 | 0.80 | 6.27 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U11 | 26274 | 2023-12-07 | 2022-02-19 | 3.2 | 2.77 | — | 3.4 | 0.006 | 0.73 | 0.0 | 0.06 | 17.79 | 0.00 | 2.186 | 14.68 | 2.36 | 6.0 | 94.0 | 0.0 | -2.79 | 0.29 | 0.64 | 3.31 | 3.3 | 0.004 | 0.81 | 0.0 | 0.06 | 18.07 | 0.00 | 2.227 | 10.90 | 0.26 | 8.8 | 91.2 | 0.0 | -3.45 | 1.45 | 0.29 | 0.68 | 3.95 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7QiG | 13989 | 2023-12-07 | 2021-12-14 | 2.7 | 2.81 | — | 2.8 | 0.005 | 0.69 | 0.0 | 0.05 | 14.67 | 0.01 | 2.138 | 2.72 | 0.00 | 8.7 | 91.3 | 0.0 | -4.18 | 0.37 | 0.86 | 6.92 | 2.8 | 0.003 | 0.64 | 0.0 | 0.05 | 17.73 | 0.00 | 2.134 | 6.24 | 0.87 | 10.0 | 90.0 | 0.0 | -4.19 | 0.62 | 0.38 | 0.87 | 5.69 | 3213 | 396 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N1i | 8903 | 2023-12-09 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | 3.6 | 0.003 | 0.76 | 0.0 | 0.04 | 17.55 | 0.00 | 2.210 | 15.09 | 0.79 | 4.5 | 95.5 | 0.0 | 0.13 | 2.37 | 0.56 | 0.81 | 1.82 | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2023-12-07 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.065 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.003 | 0.95 | 0.0 | 0.05 | 15.86 | 0.00 | 2.112 | 24.41 | 0.00 | 23.0 | 77.0 | 0.0 | -4.78 | 2.77 | 0.57 | 0.65 | 3.88 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6AVB | 7008 | 2023-12-08 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.009 | 1.13 | 3.0 | 0.06 | 11.85 | 0.01 | 2.072 | 27.43 | 0.00 | 12.9 | 86.8 | 0.3 | -5.00 | 0.58 | 0.79 | 2.72 | 3.8 | 0.004 | 0.97 | 0.0 | 0.05 | 15.49 | 0.00 | 2.182 | 18.00 | 0.98 | 11.0 | 89.0 | 0.0 | -2.37 | 1.70 | 0.58 | 0.79 | 1.55 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6C53 | 7342 | 2023-12-09 | 2018-01-13 | 4.2 | 4.25 | — | 4.1 | 0.006 | 0.92 | 0.0 | 0.05 | 9.18 | 0.00 | 2.150 | 7.71 | 0.00 | 7.9 | 92.1 | 0.0 | -4.46 | 0.69 | 0.76 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 12.41 | 0.00 | 2.136 | 26.55 | 0.00 | 6.0 | 94.0 | 0.0 | -2.17 | 1.70 | 0.71 | 0.80 | — | 12023 | 1716 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJM | 7936 | 2023-12-09 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 11.49 | 0.01 | 2.069 | 3.69 | 0.00 | 4.2 | 95.8 | 0.0 | -4.16 | 0.67 | 0.84 | 3.65 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.28 | 0.00 | 1.933 | 7.76 | 0.16 | 4.4 | 95.6 | 0.0 | -0.53 | 1.26 | 0.68 | 0.86 | 2.97 | 11768 | 1488 | 12 | 0 | 8 | 4 | 0 | logfile |
✔ | 7ZKY | 14771 | 2023-12-07 | 2022-04-13 | 2.56 | 2.64 | — | 2.8 | 0.013 | 2.00 | 0.0 | 0.10 | 15.17 | 0.01 | 2.509 | 1.92 | 0.00 | 1.9 | 98.1 | 0.0 | -3.47 | 0.26 | 0.53 | 3.35 | 2.7 | 0.006 | 0.83 | 0.0 | 0.04 | 18.07 | 0.00 | 2.046 | 12.61 | 2.71 | 8.6 | 91.4 | 0.0 | -3.83 | 1.76 | 0.51 | 0.85 | 4.81 | 5238 | 642 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2023-12-10 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 17.12 | 0.00 | 1.994 | 11.47 | 0.24 | 7.2 | 92.4 | 0.4 | -1.20 | 1.65 | 0.65 | 0.77 | 1.29 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 3J63 | 5830 | 2023-12-09 | 2013-12-05 | 3.8 | 3.96 | — | 3.9 | 0.005 | 1.25 | 0.0 | 0.07 | 17.40 | 0.00 | 2.184 | 54.83 | 7.31 | 10.3 | 86.7 | 3.1 | -4.14 | 0.71 | 0.65 | 1.05 | 3.9 | 0.004 | 0.99 | 0.0 | 0.04 | 18.43 | 0.00 | 2.177 | 16.34 | 1.00 | 1.6 | 98.4 | 0.0 | -0.41 | 1.91 | 0.79 | 0.77 | 1.22 | 10590 | 1365 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZJ2 | 14739 | 2023-12-07 | 2022-04-08 | 3.32 | 3.56 | — | 3.6 | 0.014 | 2.21 | 0.0 | 0.08 | 15.29 | 0.01 | 2.548 | 0.00 | 0.00 | 2.3 | 97.7 | 0.0 | -3.75 | 0.47 | 0.78 | 4.64 | 3.6 | 0.005 | 0.75 | 0.0 | 0.03 | 16.47 | 0.00 | 2.160 | 16.93 | 0.57 | 3.1 | 96.9 | 0.0 | -3.55 | 3.51 | 0.44 | 0.74 | 4.77 | 3792 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UHF | 42279 | 2023-12-09 | 2023-10-09 | 3.8 | 3.77 | — | 1.7 | 0.002 | 0.49 | 0.0 | 0.04 | 12.21 | 0.00 | 2.126 | 10.07 | 0.00 | 3.0 | 97.0 | 0.0 | -1.49 | 0.62 | 0.79 | 0.57 | 1.7 | 0.004 | 0.85 | 0.0 | 0.04 | 15.96 | 0.00 | 2.168 | 23.75 | 0.84 | 4.9 | 95.1 | 0.0 | -0.34 | 0.92 | 0.63 | 0.81 | 0.15 | 12411 | 1739 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iX1 | 35786 | 2023-12-08 | 2023-03-31 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7896 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |