Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HHX	34806	2023-02-26	2022-11-17	3.62	3.70	3.71	3.6	0.003	0.61	0.0	0.05	13.16	0.01	2.114	12.98	0.17	5.7	94.1	0.1	-1.21	0.47	0.60	0.93	3.6	0.004	0.69	0.0	0.05	15.22	0.00	2.031	16.35	0.43	8.2	91.8	0.0	-1.76	0.46	0.46	0.62	1.05	27435	3477	17	0	35	0	0	logfile
✘	8F6C	28879	2023-02-23	2022-11-16	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19344	2396	12	0	12	0	0	logfile
✔	8F6E	28881	2023-02-19	2022-11-16	3.8	4.02	3.70	4.0	0.003	0.55	0.0	0.04	13.52	0.00	2.060	5.75	0.00	5.4	94.2	0.4	-0.77	0.72	0.75	2.20	4.0	0.004	0.79	0.0	0.04	15.85	0.00	2.051	11.78	0.44	6.6	92.9	0.4	-1.37	1.20	0.71	0.72	2.30	10478	1366	8	0	8	0	0	logfile
✔	8F6J	28885	2023-02-19	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.56	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.61	0.0	0.04	16.27	0.00	2.066	10.40	0.17	5.4	94.3	0.3	-0.51	0.49	0.72	0.78	1.74	10472	1366	8	0	8	0	0	logfile
✘	8F68	28877	2023-02-19	2022-11-16	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9666	1198	6	0	6	0	0	logfile
✔	8HGG	34738	2023-02-25	2022-11-14	3.64	3.02	3.51	3.5	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.003	0.57	0.0	0.04	14.32	0.00	2.112	8.48	0.18	4.8	95.2	0.0	-0.86	0.62	0.68	0.70	2.22	25404	3238	6	0	2	0	0	logfile
✔	8HGH	34739	2023-02-25	2022-11-14	4.16	3.79	4.05	3.7	0.003	0.62	2.0	0.05	12.05	0.01	2.298	3.92	5.83	3.4	96.6	0.0	-1.78	0.76	0.69	—	3.7	0.003	0.64	0.0	0.04	12.54	0.00	2.120	11.29	0.00	3.5	96.5	0.0	-0.79	0.95	0.78	0.72	—	25512	3266	6	0	2	0	0	logfile
✔	8HG1	34731	2023-02-22	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.21	0.00	2.100	5.91	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.003	0.60	0.0	0.04	17.61	0.00	2.184	7.02	1.39	4.7	95.1	0.2	0.39	0.95	0.81	0.82	3.39	14155	1642	6	36	2	0	0	logfile
✔	8F56	28861	2023-02-21	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.58	0.0	0.04	16.16	0.00	2.177	10.36	3.00	1.8	98.2	0.0	1.79	1.29	0.70	0.86	2.19	15631	2039	2	0	0	0	0	logfile
✔	8F4N	28855	2023-02-21	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.54	0.0	0.04	15.74	0.00	2.085	9.21	2.18	1.4	98.6	0.0	2.01	1.26	0.69	0.85	2.77	15574	2043	2	0	0	0	0	logfile
✔	8F4R	28857	2023-02-24	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	10.45	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	3.3	0.003	0.52	0.0	0.04	14.45	0.00	2.078	7.71	0.28	1.2	98.8	0.0	1.93	1.23	0.72	0.87	2.65	23675	3097	4	0	1	0	0	logfile
✔	8F41	28849	2023-02-22	2022-11-10	3.9	3.12	3.87	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.432	21.12	0.39	9.4	90.6	0.0	-1.29	0.54	0.55	0.90	3.1	0.003	0.72	0.0	0.04	16.24	0.00	2.073	11.40	0.36	7.2	92.8	0.0	-0.80	1.89	0.60	0.70	1.39	57846	7464	18	0	6	0	0	logfile
✔	8F3E	28848	2023-02-24	2022-11-10	3.09	3.38	3.21	3.4	0.003	0.52	0.0	0.04	9.85	0.00	2.213	7.20	2.91	1.9	98.1	0.0	1.77	0.61	0.64	1.05	3.4	0.003	0.59	0.0	0.04	15.62	0.00	2.070	10.09	0.40	1.8	98.2	0.0	1.68	1.75	0.63	0.80	1.92	23627	3095	3	0	0	0	0	logfile
✔	8F3D	28846	2023-02-22	2022-11-09	3.4	2.64	3.48	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.784	21.50	0.39	9.3	90.7	0.0	-1.29	0.57	0.62	0.97	2.6	0.005	0.81	0.0	0.05	16.30	0.01	2.058	15.11	0.49	10.3	89.7	0.0	-1.38	2.65	0.59	0.67	1.08	57846	7464	18	0	6	0	0	logfile
✔	8HDS	34679	2023-02-21	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	8HDW	34681	2023-02-22	2022-11-06	3.0	2.72	2.96	2.9	0.006	0.83	0.0	0.05	15.95	0.01	1.939	13.55	11.19	11.8	88.2	0.0	-2.56	0.46	0.72	1.96	2.8	0.004	0.74	0.0	0.05	17.45	0.01	2.071	12.84	5.67	10.3	89.7	0.0	-1.64	1.30	0.53	0.76	1.83	54552	7140	30	0	0	0	0	logfile
✘	8F0A	28754	2023-02-22	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✔	8HC8	34655	2023-02-17	2022-11-01	3.95	4.00	3.84	4.0	0.003	0.71	0.0	0.05	16.63	0.01	2.317	5.70	0.56	4.2	95.8	0.0	-1.17	0.64	0.70	0.79	4.0	0.003	0.61	0.0	0.04	16.50	0.00	2.163	9.71	0.74	6.0	94.0	0.0	-1.34	0.51	0.65	0.72	1.60	4832	628	4	0	1	0	0	logfile
✔	8HC7	34654	2023-02-18	2022-11-01	4.54	4.75	4.46	4.5	0.002	0.59	0.0	0.04	13.35	0.00	2.255	5.72	0.00	4.7	95.3	0.0	-1.52	0.77	0.68	—	4.5	0.004	0.64	0.0	0.04	13.48	0.00	2.132	16.75	0.13	7.7	92.3	0.0	-1.50	1.75	0.80	0.76	—	7373	919	6	0	7	0	0	logfile
✔	8HC3	34650	2023-02-27	2022-11-01	4.35	4.29	4.25	3.9	0.002	0.56	0.0	0.05	13.15	0.00	2.206	5.53	0.00	3.5	96.5	0.0	-0.31	0.81	0.74	—	3.9	0.005	0.71	0.0	0.05	13.14	0.00	2.047	15.55	0.00	5.5	94.5	0.0	-0.71	1.79	0.82	0.79	—	31497	3954	22	0	54	0	0	logfile

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