Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRC	34967	2023-04-28	2022-12-15	2.58	2.69	2.60	2.6	0.002	0.48	0.0	0.04	13.75	0.00	2.237	8.80	0.01	1.9	98.1	0.0	1.74	0.79	0.84	2.77	2.6	0.003	0.55	0.0	0.04	16.14	0.00	2.136	9.49	1.75	2.9	97.1	0.0	1.70	1.59	0.81	0.88	3.02	74964	9312	12	0	0	0	0	logfile
✔	8FHT	29103	2023-04-20	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.50	0.0	0.04	14.20	0.00	2.169	6.85	0.41	2.3	97.7	0.0	2.48	0.39	0.57	0.80	2.13	7006	936	4	0	4	0	0	logfile
✔	8BYP	16330	2023-04-25	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.76	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.003	0.56	0.0	0.04	16.11	0.00	2.146	10.67	0.13	5.7	94.3	0.0	-0.46	1.11	0.70	0.82	2.95	19836	2421	2	0	0	0	0	logfile
✔	8C00	16347	2023-04-22	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.29	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.42	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	8C03	16354	2023-04-20	2022-12-15	3.89	4.09	3.71	4.1	0.008	0.80	0.0	0.04	13.07	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.003	0.69	0.0	0.04	15.94	0.00	2.161	14.07	0.84	1.4	98.6	0.0	2.31	1.49	0.57	0.78	1.22	3330	429	1	0	1	0	0	logfile
✔	8C02	16353	2023-04-20	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	4.2	0.004	0.79	0.0	0.04	13.27	0.00	2.201	17.06	0.00	4.3	95.7	0.0	1.78	1.54	0.58	0.77	—	4242	549	2	0	0	0	0	logfile
✔	8HR7	34962	2023-04-24	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	8BZY	16345	2023-04-20	2022-12-15	3.24	3.52	3.23	3.6	0.005	0.66	0.0	0.04	11.45	0.00	2.297	6.68	2.42	2.4	97.6	0.0	2.10	0.48	0.78	2.48	3.6	0.004	0.53	0.0	0.04	13.30	0.00	2.375	7.14	0.44	2.8	97.2	0.0	1.79	0.71	0.47	0.77	1.93	4311	549	3	0	2	0	0	logfile
✔	8FHR	29100	2023-04-20	2022-12-14	2.9	3.23	2.98	3.2	0.009	0.82	0.0	0.05	13.01	0.01	2.289	5.32	0.65	4.2	95.8	0.0	-1.64	0.63	0.86	4.29	3.2	0.002	0.49	0.0	0.04	14.64	0.00	2.217	3.88	1.17	2.4	97.6	0.0	0.92	0.93	0.59	0.85	2.96	7306	950	4	0	4	0	0	logfile
✔	8FHo	29097	2023-04-22	2022-12-14	2.95	3.32	3.23	3.2	0.009	0.94	0.0	0.05	14.06	0.01	2.207	5.59	1.24	4.6	95.4	0.0	-2.02	0.66	0.87	4.05	3.2	0.002	0.55	0.0	0.04	15.78	0.00	2.178	5.04	1.24	2.6	97.4	0.0	0.31	0.40	0.66	0.88	3.21	13624	1723	5	0	6	0	0	logfile
✔	8FHQ	29099	2023-04-20	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.57	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.261	3.14	0.52	2.3	97.7	0.0	0.50	0.90	0.62	0.86	3.57	7306	950	4	0	4	0	0	logfile
✔	8FHN	29096	2023-04-22	2022-12-14	3.0	3.42	3.14	3.4	0.009	0.99	1.0	0.06	14.56	0.01	2.199	6.72	2.21	4.7	95.3	0.0	-1.79	0.69	0.88	3.88	3.4	0.003	0.54	0.0	0.04	16.06	0.00	2.189	5.23	2.07	2.5	97.4	0.1	0.29	0.40	0.66	0.88	3.04	13613	1722	5	0	4	0	0	logfile
✘	8FHD	29082	2023-04-22	2022-12-14	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12686	1467	6	0	35	0	0	logfile
✔	8FHP	29098	2023-04-20	2022-12-14	3.04	3.38	3.13	3.3	0.009	0.80	0.0	0.05	13.08	0.01	2.227	5.38	0.39	3.8	96.2	0.0	-1.88	0.61	0.85	2.63	3.3	0.003	0.53	0.0	0.04	15.04	0.00	2.254	3.07	0.39	2.5	97.5	0.0	0.71	0.34	0.56	0.84	2.14	7306	950	4	0	4	0	0	logfile
✔	8FH3	29078	2023-04-27	2022-12-13	4.3	3.61	3.35	2.8	0.010	0.99	0.0	0.06	11.99	0.01	2.008	16.10	0.00	7.4	92.5	0.1	-2.93	0.75	0.58	—	2.2	0.003	0.66	0.0	0.04	12.14	0.00	2.151	9.86	0.00	5.3	94.7	0.0	-0.75	1.17	0.81	0.76	—	26773	3642	7	0	4	0	0	logfile
✔	8FEi	29028	2023-04-20	2022-12-06	3.0	4.02	3.08	3.6	0.007	0.91	0.0	0.05	14.00	0.00	1.541	5.78	0.18	5.1	94.9	0.0	-3.98	0.90	0.84	3.15	3.6	0.003	0.60	0.0	0.04	14.75	0.00	2.007	9.69	0.54	3.1	96.9	0.0	0.24	1.08	0.91	0.85	2.80	5189	674	1	0	2	0	0	logfile
✘	8FE1	29019	2023-04-23	2022-12-05	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15445	1772	10	0	48	0	0	logfile
✔	8HMV	34903	2023-04-20	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.49	0.0	0.04	15.50	0.00	2.170	4.71	0.45	2.6	97.4	0.0	0.81	0.37	0.66	0.87	3.21	8127	1022	5	0	0	0	0	logfile
✔	8FDG	29011	2023-04-22	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.71	0.0	0.05	15.88	0.00	2.171	10.24	0.22	12.0	87.9	0.1	-2.96	0.41	0.73	0.78	2.09	12163	1505	1	0	0	0	0	logfile
✔	8FD5	29002	2023-04-19	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile

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