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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GWo | 34318 | 2022-12-14 | 2022-09-17 | 3.8 | 4.21 | 3.91 | 4.0 | 0.008 | 0.82 | 0.0 | 0.05 | 15.18 | 0.01 | 1.755 | 15.78 | 0.66 | 8.8 | 91.1 | 0.1 | -2.55 | 0.81 | 0.82 | 1.08 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 15.52 | 0.00 | 2.170 | 12.56 | 0.44 | 6.9 | 93.1 | 0.0 | -1.58 | 0.51 | 0.82 | 0.82 | 0.85 | 21880 | 2655 | 12 | 53 | 9 | 0 | 0 | logfile |
✔ | 8B3J | 15830 | 2022-12-11 | 2022-09-16 | 3.1 | 3.34 | 3.18 | 3.3 | 0.005 | 0.63 | 0.0 | 0.05 | 15.71 | 0.00 | 2.144 | 7.61 | 0.00 | 7.6 | 92.4 | 0.0 | -2.49 | 0.44 | 0.88 | 3.25 | 3.3 | 0.005 | 0.63 | 0.0 | 0.05 | 16.25 | 0.00 | 2.127 | 7.16 | 0.32 | 8.2 | 91.8 | 0.0 | -2.31 | 0.24 | 0.44 | 0.88 | 3.00 | 5688 | 718 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GWA | 34307 | 2022-12-20 | 2022-09-16 | 2.9 | 3.13 | 3.01 | 7.0 | 0.017 | 1.77 | 0.0 | 0.16 | 16.93 | 0.02 | 1.107 | 14.98 | 0.00 | 5.7 | 94.2 | 0.2 | -1.01 | 0.17 | -0.02 | 0.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37660 | 4006 | 27 | 0 | 160 | 0 | 0 | logfile |
✔ | 8Eio | 28160 | 2022-12-12 | 2022-09-15 | 2.8 | 2.72 | 2.98 | 3.0 | 0.006 | 1.04 | 0.0 | 0.04 | 11.61 | 0.01 | 1.991 | 1.14 | 1.09 | 1.0 | 99.0 | 0.1 | -0.27 | 0.68 | 0.86 | 4.04 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 15.91 | 0.00 | 2.046 | 4.31 | 1.58 | 2.3 | 97.7 | 0.0 | 1.57 | 0.89 | 0.68 | 0.86 | 3.07 | 9550 | 1162 | 3 | 0 | 25 | 0 | 0 | logfile |
✘ | 8EiG | 28155 | 2022-12-18 | 2022-09-15 | 3.6 | 2.88 | 3.69 | 3.4 | 0.006 | 1.04 | 0.0 | 0.04 | 12.67 | 0.00 | 1.883 | 2.08 | 1.91 | 2.5 | 97.4 | 0.1 | -0.77 | 0.61 | 0.79 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9249 | 1141 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 8EiQ | 28161 | 2022-12-12 | 2022-09-15 | 3.0 | 2.87 | 3.05 | 3.2 | 0.006 | 1.06 | 0.0 | 0.04 | 12.41 | 0.01 | 1.936 | 1.40 | 1.78 | 1.3 | 98.7 | 0.0 | -1.39 | 0.65 | 0.87 | 3.70 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 16.27 | 0.00 | 1.956 | 3.47 | 2.67 | 2.3 | 97.7 | 0.0 | 0.61 | 1.10 | 0.66 | 0.87 | 2.43 | 9578 | 1162 | 3 | 0 | 25 | 0 | 0 | logfile |
✔ | 8GVK | 32099 | 2022-12-11 | 2022-09-15 | 2.2 | 2.06 | 2.20 | 2.2 | 0.006 | 1.29 | 0.0 | 0.06 | 15.35 | 0.00 | 2.057 | 5.53 | 4.07 | 3.4 | 94.0 | 2.6 | -1.54 | 0.65 | 0.80 | 5.76 | 2.1 | 0.005 | 0.91 | 0.0 | 0.05 | 15.61 | 0.01 | 2.211 | 9.60 | 3.49 | 5.3 | 93.8 | 0.9 | -1.03 | 0.88 | 0.74 | 0.85 | 6.27 | 3567 | 476 | 8 | 0 | 0 | 19 | 0 | logfile |
✔ | 8GUY | 34281 | 2022-12-13 | 2022-09-14 | 4.18 | 4.57 | 4.26 | 4.3 | 0.005 | 1.00 | 0.0 | 0.06 | 14.55 | 0.01 | 2.249 | 6.18 | 0.12 | 10.0 | 90.0 | 0.0 | -4.23 | 0.83 | 0.80 | — | 4.3 | 0.002 | 0.66 | 0.0 | 0.04 | 13.79 | 0.00 | 2.197 | 10.97 | 0.25 | 7.7 | 92.3 | 0.0 | -2.21 | 1.63 | 0.83 | 0.79 | — | 14222 | 1762 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GUD | 34273 | 2022-12-11 | 2022-09-11 | 2.62 | 2.98 | 2.83 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 14.80 | 0.01 | 2.116 | 20.53 | 0.00 | 6.0 | 94.0 | 0.0 | -2.12 | 0.52 | 0.56 | 1.45 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 17.30 | 0.00 | 2.157 | 17.22 | 2.51 | 4.9 | 95.1 | 0.0 | -1.29 | 1.14 | 0.49 | 0.57 | 1.10 | 6814 | 835 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8GUB | 34272 | 2022-12-12 | 2022-09-11 | 2.73 | 2.94 | 2.82 | 3.0 | 0.008 | 0.62 | 0.0 | 0.04 | 14.24 | 0.00 | 1.994 | 34.74 | 0.17 | 4.8 | 95.2 | 0.0 | -0.28 | 0.51 | 0.65 | 3.44 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 17.14 | 0.00 | 2.182 | 9.33 | 2.00 | 3.8 | 96.2 | 0.0 | -0.04 | 1.20 | 0.66 | 0.78 | 3.20 | 10358 | 1253 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EFB | 28077 | 2022-12-12 | 2022-09-08 | 3.2 | 3.04 | 3.02 | 3.2 | 0.007 | 0.99 | 0.0 | 0.06 | 8.95 | 0.01 | 2.247 | 4.83 | 0.00 | 1.8 | 98.2 | 0.0 | 1.18 | 0.61 | 0.75 | 2.06 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 14.70 | 0.00 | 2.123 | 8.82 | 0.31 | 1.5 | 98.5 | 0.0 | 1.07 | 1.35 | 0.64 | 0.83 | 2.83 | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EFQ | 28088 | 2022-12-11 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 1.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.26 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | 3.6 | 0.003 | 0.63 | 1.0 | 0.04 | 14.07 | 0.00 | 2.135 | 10.29 | 0.26 | 2.2 | 97.8 | 0.0 | 0.55 | 2.72 | 0.64 | 0.79 | 1.63 | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8EF6 | 28069 | 2022-12-18 | 2022-09-08 | 3.2 | 2.91 | 3.02 | 3.1 | 0.005 | 0.87 | 0.0 | 0.07 | 7.72 | 0.01 | 2.267 | 4.07 | 0.00 | 1.3 | 98.7 | 0.0 | 0.00 | 0.59 | 0.75 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11686 | 1439 | 9 | 0 | 12 | 0 | 0 | logfile |
✔ | 8EFL | 28085 | 2022-12-12 | 2022-09-08 | 3.2 | 3.35 | 3.03 | 3.4 | 0.006 | 0.92 | 0.0 | 0.07 | 8.25 | 0.01 | 2.259 | 3.80 | 0.00 | 1.1 | 98.9 | 0.0 | 0.35 | 0.62 | 0.77 | 2.84 | 3.3 | 0.002 | 0.52 | 0.0 | 0.04 | 13.28 | 0.00 | 2.102 | 6.93 | 0.08 | 1.5 | 98.5 | 0.0 | 1.96 | 0.64 | 0.62 | 0.82 | 2.48 | 11750 | 1446 | 9 | 0 | 12 | 0 | 0 | logfile |
✔ | 8EF5 | 28066 | 2022-12-12 | 2022-09-08 | 3.3 | 2.72 | 3.17 | 3.3 | 0.004 | 0.88 | 0.0 | 0.07 | 7.98 | 0.01 | 2.284 | 4.11 | 0.00 | 1.3 | 98.7 | 0.0 | 0.02 | 0.73 | 0.76 | 2.15 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 15.20 | 0.00 | 2.129 | 12.70 | 0.48 | 1.8 | 98.2 | 0.0 | 1.10 | 0.83 | 0.76 | 0.80 | 1.75 | 11705 | 1441 | 9 | 0 | 12 | 0 | 0 | logfile |
✘ | 8EFo | 28086 | 2022-12-18 | 2022-09-08 | 2.8 | 2.69 | 2.95 | 3.0 | 0.004 | 0.85 | 0.0 | 0.06 | 8.02 | 0.01 | 2.241 | 5.94 | 0.00 | 1.5 | 98.5 | 0.0 | -0.93 | 0.59 | 0.76 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11708 | 1441 | 9 | 0 | 12 | 0 | 0 | logfile |
✔ | 8EFi | 28083 | 2022-12-15 | 2022-09-08 | 3.4 | 3.88 | 3.42 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 14.29 | 0.00 | 2.065 | 7.60 | 0.04 | 3.0 | 97.0 | 0.0 | 1.40 | 0.62 | 0.87 | 2.08 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 15.45 | 0.00 | 2.051 | 8.10 | 0.04 | 2.8 | 97.2 | 0.0 | 1.53 | 0.36 | 0.63 | 0.89 | 1.73 | 23256 | 2929 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 8B0J | 15785 | 2022-12-16 | 2022-09-07 | 3.99 | 4.45 | 4.02 | 4.1 | 0.009 | 1.30 | 0.0 | 0.08 | 19.83 | 0.01 | 1.945 | 11.42 | 0.00 | 9.7 | 90.3 | 0.0 | -2.43 | 0.73 | 0.68 | 1.71 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 19.88 | 0.00 | 1.954 | 15.72 | 0.48 | 6.0 | 94.0 | 0.0 | -0.41 | 1.27 | 0.75 | 0.74 | 1.59 | 28636 | 1931 | 7 | 160 | 0 | 0 | 12434 | logfile |
✔ | 8B0i | 15784 | 2022-12-13 | 2022-09-07 | 4.28 | 5.23 | 4.35 | 4.5 | 0.012 | 1.98 | 1.0 | 0.11 | 22.56 | 0.01 | 1.911 | 8.92 | 0.14 | 5.1 | 94.9 | 0.0 | -1.62 | 0.77 | 0.61 | — | 4.5 | 0.002 | 0.60 | 0.0 | 0.04 | 20.62 | 0.00 | 1.974 | 14.11 | 0.00 | 5.5 | 94.5 | 0.0 | 0.19 | 1.43 | 0.80 | 0.73 | — | 17636 | 1075 | 5 | 103 | 0 | 0 | 7831 | logfile |
✔ | 8EEX | 28064 | 2022-12-13 | 2022-09-07 | 2.95 | 2.88 | 2.94 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 16.12 | 0.01 | 2.173 | 0.69 | 0.51 | 1.8 | 98.2 | 0.0 | -0.43 | 0.69 | 0.83 | 3.81 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 17.76 | 0.00 | 2.150 | 5.40 | 1.77 | 3.0 | 97.0 | 0.0 | 0.55 | 1.51 | 0.70 | 0.87 | 3.21 | 17082 | 2008 | 4 | 36 | 4 | 0 | 0 | logfile |