Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GWo	34318	2022-12-14	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.82	0.0	0.05	15.18	0.01	1.755	15.78	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.63	0.0	0.04	15.52	0.00	2.170	12.56	0.44	6.9	93.1	0.0	-1.58	0.51	0.82	0.82	0.85	21880	2655	12	53	9	0	0	logfile
✔	8B3J	15830	2022-12-11	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.61	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.005	0.63	0.0	0.05	16.25	0.00	2.127	7.16	0.32	8.2	91.8	0.0	-2.31	0.24	0.44	0.88	3.00	5688	718	3	0	0	0	0	logfile
✘	8GWA	34307	2022-12-20	2022-09-16	2.9	3.13	3.01	7.0	0.017	1.77	0.0	0.16	16.93	0.02	1.107	14.98	0.00	5.7	94.2	0.2	-1.01	0.17	-0.02	0.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37660	4006	27	0	160	0	0	logfile
✔	8Eio	28160	2022-12-12	2022-09-15	2.8	2.72	2.98	3.0	0.006	1.04	0.0	0.04	11.61	0.01	1.991	1.14	1.09	1.0	99.0	0.1	-0.27	0.68	0.86	4.04	3.0	0.002	0.51	0.0	0.04	15.91	0.00	2.046	4.31	1.58	2.3	97.7	0.0	1.57	0.89	0.68	0.86	3.07	9550	1162	3	0	25	0	0	logfile
✘	8EiG	28155	2022-12-18	2022-09-15	3.6	2.88	3.69	3.4	0.006	1.04	0.0	0.04	12.67	0.00	1.883	2.08	1.91	2.5	97.4	0.1	-0.77	0.61	0.79	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9249	1141	1	0	6	0	0	logfile
✔	8EiQ	28161	2022-12-12	2022-09-15	3.0	2.87	3.05	3.2	0.006	1.06	0.0	0.04	12.41	0.01	1.936	1.40	1.78	1.3	98.7	0.0	-1.39	0.65	0.87	3.70	3.1	0.003	0.53	0.0	0.04	16.27	0.00	1.956	3.47	2.67	2.3	97.7	0.0	0.61	1.10	0.66	0.87	2.43	9578	1162	3	0	25	0	0	logfile
✔	8GVK	32099	2022-12-11	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.005	0.91	0.0	0.05	15.61	0.01	2.211	9.60	3.49	5.3	93.8	0.9	-1.03	0.88	0.74	0.85	6.27	3567	476	8	0	0	19	0	logfile
✔	8GUY	34281	2022-12-13	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.18	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.002	0.66	0.0	0.04	13.79	0.00	2.197	10.97	0.25	7.7	92.3	0.0	-2.21	1.63	0.83	0.79	—	14222	1762	6	0	0	0	0	logfile
✔	8GUD	34273	2022-12-11	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.53	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.30	0.00	2.157	17.22	2.51	4.9	95.1	0.0	-1.29	1.14	0.49	0.57	1.10	6814	835	1	0	1	0	0	logfile
✔	8GUB	34272	2022-12-12	2022-09-11	2.73	2.94	2.82	3.0	0.008	0.62	0.0	0.04	14.24	0.00	1.994	34.74	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.004	0.60	0.0	0.04	17.14	0.00	2.182	9.33	2.00	3.8	96.2	0.0	-0.04	1.20	0.66	0.78	3.20	10358	1253	3	0	1	0	0	logfile
✔	8EFB	28077	2022-12-12	2022-09-08	3.2	3.04	3.02	3.2	0.007	0.99	0.0	0.06	8.95	0.01	2.247	4.83	0.00	1.8	98.2	0.0	1.18	0.61	0.75	2.06	3.2	0.003	0.58	0.0	0.04	14.70	0.00	2.123	8.82	0.31	1.5	98.5	0.0	1.07	1.35	0.64	0.83	2.83	8947	1136	6	0	1	0	0	logfile
✔	8EFQ	28088	2022-12-11	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	1.0	0.05	8.64	0.01	2.298	3.26	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	3.6	0.003	0.63	1.0	0.04	14.07	0.00	2.135	10.29	0.26	2.2	97.8	0.0	0.55	2.72	0.64	0.79	1.63	7046	892	6	0	2	0	0	logfile
✘	8EF6	28069	2022-12-18	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.07	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11686	1439	9	0	12	0	0	logfile
✔	8EFL	28085	2022-12-12	2022-09-08	3.2	3.35	3.03	3.4	0.006	0.92	0.0	0.07	8.25	0.01	2.259	3.80	0.00	1.1	98.9	0.0	0.35	0.62	0.77	2.84	3.3	0.002	0.52	0.0	0.04	13.28	0.00	2.102	6.93	0.08	1.5	98.5	0.0	1.96	0.64	0.62	0.82	2.48	11750	1446	9	0	12	0	0	logfile
✔	8EF5	28066	2022-12-12	2022-09-08	3.3	2.72	3.17	3.3	0.004	0.88	0.0	0.07	7.98	0.01	2.284	4.11	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.4	0.003	0.71	0.0	0.04	15.20	0.00	2.129	12.70	0.48	1.8	98.2	0.0	1.10	0.83	0.76	0.80	1.75	11705	1441	9	0	12	0	0	logfile
✘	8EFo	28086	2022-12-18	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	8.02	0.01	2.241	5.94	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11708	1441	9	0	12	0	0	logfile
✔	8EFi	28083	2022-12-15	2022-09-08	3.4	3.88	3.42	3.5	0.003	0.57	0.0	0.04	14.29	0.00	2.065	7.60	0.04	3.0	97.0	0.0	1.40	0.62	0.87	2.08	3.6	0.002	0.57	0.0	0.04	15.45	0.00	2.051	8.10	0.04	2.8	97.2	0.0	1.53	0.36	0.63	0.89	1.73	23256	2929	13	0	10	0	0	logfile
✔	8B0J	15785	2022-12-16	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	19.83	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.63	0.0	0.04	19.88	0.00	1.954	15.72	0.48	6.0	94.0	0.0	-0.41	1.27	0.75	0.74	1.59	28636	1931	7	160	0	0	12434	logfile
✔	8B0i	15784	2022-12-13	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.60	0.0	0.04	20.62	0.00	1.974	14.11	0.00	5.5	94.5	0.0	0.19	1.43	0.80	0.73	—	17636	1075	5	103	0	0	7831	logfile
✔	8EEX	28064	2022-12-13	2022-09-07	2.95	2.88	2.94	3.0	0.006	0.89	0.0	0.05	16.12	0.01	2.173	0.69	0.51	1.8	98.2	0.0	-0.43	0.69	0.83	3.81	3.0	0.003	0.62	0.0	0.04	17.76	0.00	2.150	5.40	1.77	3.0	97.0	0.0	0.55	1.51	0.70	0.87	3.21	17082	2008	4	36	4	0	0	logfile

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