Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYX	26197	2022-05-13	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.51	0.0	0.04	13.21	0.00	2.231	4.55	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.004	0.64	0.0	0.04	15.66	0.01	2.144	7.23	1.90	2.1	97.9	0.0	0.39	0.63	0.45	0.66	3.62	10219	1269	8	0	14	0	0	logfile
✔	7WX4	32876	2022-05-12	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.004	0.55	0.0	0.04	17.63	0.00	2.140	5.46	0.00	6.0	94.0	0.0	-0.17	0.44	0.42	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	7TYL	26184	2022-05-13	2022-02-13	3.3	3.46	3.18	3.5	0.003	0.59	0.0	0.04	12.73	0.00	2.245	6.58	0.43	1.8	98.1	0.2	-2.52	0.61	0.67	2.72	3.5	0.003	0.57	0.0	0.04	14.85	0.00	2.204	8.51	0.32	3.1	96.9	0.0	-0.02	0.42	0.66	0.78	2.30	8978	1156	6	0	1	0	0	logfile
✔	7TYi	26180	2022-05-13	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.56	0.0	0.04	12.86	0.00	2.217	6.71	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.002	0.52	0.0	0.04	14.94	0.00	2.116	8.04	0.30	2.2	97.8	0.0	0.45	0.52	0.65	0.82	2.32	9413	1154	6	0	13	0	0	logfile
✔	7TYF	26178	2022-05-13	2022-02-13	2.2	2.16	2.13	2.2	0.004	0.57	0.0	0.04	14.43	0.00	2.234	5.27	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.002	0.60	0.0	0.05	15.92	0.00	2.183	6.89	1.36	1.5	98.5	0.0	0.75	0.50	0.66	0.84	4.40	10331	1266	12	0	16	83	0	logfile
✔	7TYN	26188	2022-05-13	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.04	13.41	0.00	2.216	5.75	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.002	0.55	0.0	0.04	16.34	0.00	2.256	7.20	3.38	1.4	98.6	0.0	0.67	0.50	0.68	0.83	3.18	9364	1154	7	0	18	0	0	logfile
✔	7TYH	26179	2022-05-13	2022-02-13	3.3	3.26	3.31	3.4	0.003	0.61	0.0	0.04	12.28	0.01	2.274	4.84	1.05	1.9	98.1	0.0	-4.28	0.61	0.76	2.36	3.4	0.010	1.22	1.0	0.04	15.16	0.00	2.081	9.95	0.10	2.6	97.4	0.0	-0.97	0.49	0.60	0.78	2.30	9492	1246	7	0	1	0	0	logfile
✔	7WVY	32862	2022-05-12	2022-02-11	3.0	2.82	—	3.0	0.003	0.51	0.0	0.04	12.97	0.00	2.251	9.55	0.13	1.9	98.1	0.0	0.72	0.59	0.73	2.50	3.0	0.005	0.66	0.0	0.04	15.82	0.00	2.142	13.30	2.80	2.6	97.4	0.0	0.61	0.57	0.63	0.80	2.81	7094	922	5	0	0	0	0	logfile
✔	7WVV	32859	2022-05-12	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.78	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.004	0.57	0.0	0.04	15.41	0.01	2.120	11.34	1.89	2.7	97.3	0.0	0.33	0.45	0.63	0.80	2.87	7020	911	5	0	0	0	0	logfile
✔	7WVW	32860	2022-05-12	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.56	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.71	0.00	2.173	11.94	0.26	2.6	97.4	0.0	0.76	1.18	0.65	0.82	2.61	7169	924	5	0	0	0	0	logfile
✔	7WVX	32861	2022-05-12	2022-02-11	2.8	2.96	—	3.0	0.002	0.49	0.0	0.04	12.15	0.00	2.251	8.66	0.00	2.1	97.9	0.0	0.86	0.60	0.76	2.80	3.0	0.004	0.61	0.0	0.04	15.74	0.00	2.142	12.78	2.14	3.2	96.8	0.0	0.32	1.18	0.63	0.82	3.05	7070	920	5	0	0	0	0	logfile
✔	7R5S	14336	2022-05-16	2022-02-11	2.83	3.61	—	3.0	0.003	0.51	0.0	0.04	16.12	0.00	1.653	7.52	0.82	2.6	97.3	0.1	-0.67	0.84	0.76	2.20	3.1	0.003	0.69	0.0	0.04	17.80	0.00	2.113	8.34	1.24	3.0	97.0	0.0	1.98	0.55	0.90	0.89	2.21	26871	3126	18	82	0	1	0	logfile
✔	7R5V	14341	2022-05-14	2022-02-11	4.55	4.79	—	4.5	0.003	0.68	1.0	0.04	16.46	0.00	2.168	14.29	0.21	2.8	97.2	0.0	1.11	0.82	0.76	—	4.5	0.003	0.64	0.0	0.04	17.25	0.00	2.094	17.27	0.00	3.1	96.9	0.0	1.40	0.50	0.82	0.79	—	18507	2138	13	63	0	0	0	logfile
✔	7R5R	14334	2022-05-13	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	27.14	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.014	0.89	0.0	0.04	28.49	0.01	2.129	4.88	1.87	3.7	96.3	0.0	1.79	0.94	0.81	0.87	3.24	11625	779	12	266	0	0	0	logfile
✔	7WVU	32858	2022-05-12	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.81	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.004	0.60	0.0	0.04	15.32	0.00	2.224	11.92	0.71	3.0	97.0	0.0	0.60	1.14	0.62	0.78	2.11	6862	909	5	0	0	0	0	logfile
✔	7TY0	26163	2022-05-13	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.48	1.0	0.10	8.96	0.01	2.417	1.08	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.004	0.65	0.0	0.05	12.68	0.00	2.167	7.13	0.65	4.0	96.0	0.0	0.26	0.60	0.72	0.77	3.76	10640	1522	18	0	24	0	0	logfile
✔	7TXZ	26162	2022-05-13	2022-02-10	3.2	3.25	3.11	3.2	0.016	1.48	0.0	0.09	10.07	0.01	2.400	0.55	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.64	0.0	0.05	13.61	0.01	2.107	8.35	0.38	3.5	96.5	0.1	0.20	0.54	0.72	0.83	3.92	11303	1464	22	0	29	0	0	logfile
✔	7WVQ	32857	2022-05-16	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.77	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.5	0.003	0.69	0.0	0.04	11.33	0.00	2.105	13.30	0.03	3.2	96.8	0.1	-1.05	1.01	0.71	0.60	—	29527	3741	4	0	0	0	0	logfile
✔	7WVP	32856	2022-05-16	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.40	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.009	1.05	2.0	0.05	16.00	0.01	1.930	19.91	0.58	4.9	95.1	0.0	-1.52	1.53	0.75	0.67	0.40	29601	3750	4	0	0	0	0	logfile
✔	7WVo	32855	2022-05-15	2022-02-10	3.41	2.96	—	3.5	0.006	0.83	0.0	0.05	8.31	0.01	2.354	2.02	0.08	3.7	96.2	0.1	-3.17	0.72	0.68	0.86	3.5	0.004	0.77	0.0	0.05	14.61	0.00	2.110	12.50	0.50	2.9	97.1	0.0	-0.25	1.66	0.79	0.78	1.49	23188	2961	3	0	0	0	0	logfile

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