Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BEK	16006	2023-02-22	2022-10-21	2.86	3.33	2.86	2.9	0.006	0.51	0.0	0.04	10.22	0.00	1.777	3.58	0.67	3.2	96.8	0.0	0.77	0.91	0.87	4.06	2.9	0.002	0.55	0.0	0.04	13.48	0.00	1.933	6.34	0.88	2.3	97.7	0.0	0.75	1.02	0.92	0.91	3.32	18635	2178	14	47	4	102	0	logfile
✔	8EW0	28639	2023-02-21	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.004	0.57	0.0	0.04	18.47	0.00	2.205	7.21	4.48	2.0	97.9	0.1	2.31	0.87	0.70	0.91	3.99	13636	1747	6	0	0	0	0	logfile
✔	8BER	16009	2023-02-17	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.65	0.0	0.04	14.34	0.00	2.180	13.84	0.55	5.2	94.8	0.0	2.91	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8BDZ	15995	2023-02-17	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.004	0.58	0.0	0.04	14.08	0.00	2.208	9.58	0.27	1.7	98.3	0.0	3.07	0.44	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	8EVU	28637	2023-02-20	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	8H77	34519	2023-02-21	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.004	0.66	0.0	0.04	17.53	0.00	0.978	10.13	0.29	4.2	95.8	0.0	-0.93	0.69	0.69	0.77	2.13	15726	1930	8	0	4	0	0	logfile
✔	8EU8	28608	2023-02-21	2022-10-18	3.73	2.48	3.71	2.2	0.013	1.79	0.0	0.10	12.72	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.3	0.004	0.73	0.0	0.05	16.29	0.00	2.164	9.80	0.67	4.2	95.8	0.0	-0.22	0.67	0.75	0.75	1.95	14181	1692	24	0	63	0	0	logfile
✔	8BD5	15975	2023-02-26	2022-10-18	3.3	3.58	3.17	2.2	0.004	0.62	0.0	0.04	20.38	0.00	1.983	16.59	0.76	3.1	96.8	0.0	0.06	0.78	0.79	1.35	2.2	0.005	0.63	0.0	0.04	20.42	0.00	1.842	16.33	0.22	3.2	96.8	0.0	0.19	0.73	0.79	0.82	1.35	28398	2671	21	328	16	0	0	logfile
✔	8ET3	28585	2023-02-22	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.50	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.51	0.0	0.04	14.14	0.00	1.961	6.52	0.16	2.9	97.1	0.0	1.24	0.69	0.86	0.80	2.18	56854	3639	22	0	6	0	28542	logfile
✔	8BC0	15958	2023-02-19	2022-10-14	3.09	3.54	2.95	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.15	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.005	0.80	0.0	0.05	15.71	0.01	2.043	25.95	0.34	6.2	93.8	0.0	-0.55	0.85	0.55	0.61	1.12	10861	1316	4	0	6	0	0	logfile
✔	8BC4	15962	2023-02-22	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.14	1.0	0.11	17.93	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.73	3.14	2.4	0.003	0.62	0.0	0.05	16.84	0.00	2.086	5.17	2.11	1.0	99.0	0.0	0.90	0.65	0.61	0.76	3.72	16440	2167	29	0	9	270	0	logfile
✔	8BC3	15961	2023-02-22	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	8BC2	15960	2023-02-22	2022-10-14	2.6	2.43	2.67	2.8	0.012	1.66	0.0	0.10	18.31	0.03	2.311	3.08	13.21	4.2	95.8	0.0	-4.52	0.75	0.84	4.09	2.7	0.003	0.56	0.0	0.04	16.80	0.00	2.053	4.98	1.26	1.4	98.6	0.0	1.88	1.05	0.76	0.83	4.52	16770	2180	20	0	0	460	0	logfile
✔	8BC1	15959	2023-02-18	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✔	8BBE	15954	2023-02-23	2022-10-12	3.5	4.13	3.62	3.7	0.013	1.80	8.0	0.10	13.29	0.02	2.550	0.22	0.05	4.2	95.8	0.0	-1.28	0.77	0.66	1.77	3.7	0.003	0.70	0.0	0.04	15.45	0.00	2.146	13.66	0.32	4.1	95.9	0.0	0.03	1.82	0.83	0.77	1.20	20181	2513	4	0	6	0	0	logfile
✔	8ERR	28559	2023-02-25	2022-10-12	3.1	3.29	3.06	3.3	0.010	1.32	2.0	0.08	10.01	0.01	2.346	2.36	0.88	3.0	96.7	0.3	0.26	0.73	0.78	4.14	3.3	0.003	0.61	0.0	0.05	12.72	0.00	2.180	3.50	0.21	3.1	96.9	0.0	0.62	1.52	0.70	0.73	3.79	25780	3742	13	0	50	0	0	logfile
✔	8ERT	28560	2023-02-27	2022-10-12	3.3	3.67	3.52	3.7	0.003	0.59	0.0	0.04	14.14	0.01	2.203	10.41	0.00	8.1	91.9	0.1	0.22	0.70	0.81	1.27	3.6	0.004	0.66	0.0	0.04	16.50	0.01	2.127	12.76	0.24	8.4	91.6	0.0	0.57	0.40	0.71	0.84	0.96	16359	1995	21	0	0	0	0	logfile
✘	8ERA	28551	2023-02-26	2022-10-11	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29054	3644	6	0	2	0	0	logfile
✔	8BAH	15948	2023-02-21	2022-10-11	4.13	4.37	4.14	4.2	0.003	0.54	0.0	0.04	10.66	0.00	1.951	2.05	0.00	2.2	97.8	0.0	0.61	0.73	0.72	—	4.2	0.004	0.57	0.0	0.04	12.12	0.00	1.846	11.55	0.00	5.9	94.1	0.0	-0.19	0.70	0.73	0.74	—	13675	855	5	0	4	0	6801	logfile
✔	8B9Z	15936	2023-02-25	2022-10-10	3.28	3.47	3.46	3.3	0.008	0.86	0.0	0.84	14.70	0.01	1.929	6.28	0.00	3.8	96.2	0.0	-0.52	0.80	0.84	3.18	3.3	0.007	1.35	0.0	0.26	15.95	0.00	2.073	9.37	0.24	3.0	97.0	0.0	0.86	0.44	0.81	0.86	2.65	66970	8178	64	0	39	0	0	logfile

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