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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oTT | 17184 | 2023-08-12 | 2023-04-21 | 3.3 | 3.86 | 3.31 | 3.4 | 0.005 | 0.77 | 0.0 | 0.05 | 24.44 | 0.01 | 2.513 | 1.15 | 0.16 | 1.3 | 98.7 | 0.0 | 1.04 | 0.89 | 0.82 | 2.67 | 3.5 | 0.005 | 0.67 | 2.0 | 0.04 | 27.31 | 0.00 | 2.173 | 8.02 | 0.00 | 2.7 | 97.3 | 0.0 | 3.61 | 0.78 | 0.91 | 0.89 | 2.35 | 12973 | 859 | 17 | 288 | 8 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-08-09 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J4F | 35975 | 2023-08-12 | 2023-04-19 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12419 | 1446 | 7 | 0 | 30 | 0 | 0 | logfile |
✔ | 8oSK | 17157 | 2023-08-13 | 2023-04-19 | 3.6 | 4.91 | — | 3.0 | 0.009 | 1.12 | 0.0 | 0.06 | 24.46 | 0.01 | 2.263 | 0.52 | 0.00 | 0.3 | 99.7 | 0.0 | 1.80 | 0.86 | 0.79 | 0.46 | 3.0 | 0.005 | 0.76 | 0.0 | 0.04 | 26.90 | 0.00 | 2.169 | 12.41 | 0.31 | 2.2 | 97.8 | 0.0 | 1.61 | 1.23 | 0.87 | 0.83 | 0.62 | 13995 | 1343 | 12 | 248 | 0 | 0 | 0 | logfile |
✔ | 8oSL | 17160 | 2023-08-13 | 2023-04-19 | 4.9 | 8.34 | 6.27 | 6.8 | 0.005 | 0.80 | 0.0 | 0.05 | 28.45 | 0.00 | 2.363 | 2.30 | 0.00 | 1.1 | 98.9 | 0.0 | -0.07 | 0.81 | 0.71 | — | 7.0 | 0.005 | 0.63 | 0.0 | 0.04 | 34.49 | 0.00 | 2.021 | 72.35 | 0.00 | 5.2 | 94.8 | 0.0 | 1.59 | 2.75 | 0.87 | 0.82 | — | 13541 | 1441 | 14 | 294 | 0 | 0 | 301 | logfile |
✔ | 8J3W | 35967 | 2023-08-11 | 2023-04-18 | 3.07 | 3.28 | 3.11 | 3.3 | 0.004 | 0.68 | 0.0 | 0.04 | 13.92 | 0.00 | 1.891 | 16.07 | 0.00 | 3.8 | 96.2 | 0.0 | -1.89 | 0.58 | 0.76 | 2.14 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 15.43 | 0.00 | 2.065 | 13.53 | 0.38 | 2.1 | 97.9 | 0.0 | 0.50 | 1.23 | 0.56 | 0.78 | 1.65 | 9739 | 1218 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8J3Z | 35968 | 2023-08-11 | 2023-04-18 | 3.17 | 3.43 | 3.25 | 3.5 | 0.009 | 0.95 | 1.0 | 0.14 | 13.72 | 0.01 | 1.975 | 17.22 | 0.28 | 5.2 | 94.8 | 0.0 | -1.65 | 0.63 | 0.81 | 2.02 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 15.60 | 0.00 | 1.964 | 12.44 | 0.09 | 3.7 | 96.3 | 0.0 | -0.60 | 0.92 | 0.61 | 0.82 | 1.43 | 9814 | 1218 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 8SK7 | 40557 | 2023-08-18 | 2023-04-18 | 2.93 | 3.62 | 2.93 | 3.4 | 0.004 | 0.53 | 0.0 | 0.05 | 10.07 | 0.00 | 2.303 | 1.32 | 0.45 | 1.3 | 98.7 | 0.0 | 1.18 | 0.78 | 0.74 | 4.01 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 13.91 | 0.00 | 2.097 | 4.51 | 1.19 | 2.9 | 97.1 | 0.0 | 0.81 | 2.19 | 0.81 | 0.84 | 3.78 | 25404 | 1653 | 18 | 0 | 27 | 0 | 12267 | logfile |
✔ | 8SiK | 40508 | 2023-08-14 | 2023-04-16 | 2.9 | 3.14 | 2.92 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 15.67 | 0.00 | 2.206 | 6.55 | 0.96 | 1.7 | 98.3 | 0.0 | 2.43 | 0.56 | 0.79 | 4.00 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 16.00 | 0.00 | 2.245 | 6.49 | 1.51 | 2.2 | 97.8 | 0.0 | 2.72 | 0.22 | 0.64 | 0.84 | 3.66 | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 8SiB | 40505 | 2023-08-09 | 2023-04-14 | 2.62 | 3.44 | 2.68 | 3.3 | 0.007 | 1.30 | 0.0 | 0.06 | 11.70 | 0.01 | 2.265 | 4.20 | 0.78 | 12.9 | 85.8 | 1.3 | -5.28 | 0.73 | 0.84 | 3.54 | 3.3 | 0.003 | 0.89 | 0.0 | 0.05 | 15.64 | 0.00 | 2.221 | 13.44 | 2.58 | 13.3 | 86.4 | 0.2 | -1.48 | 2.04 | 0.70 | 0.82 | 2.65 | 3544 | 454 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Si2 | 40496 | 2023-08-24 | 2023-04-14 | 2.19 | 2.32 | 2.33 | 2.4 | 0.012 | 1.13 | 0.0 | 0.06 | 19.78 | 0.01 | 2.026 | 2.74 | 0.20 | 8.8 | 91.0 | 0.3 | -3.93 | 0.63 | 0.73 | 3.94 | 2.4 | 0.004 | 0.69 | 0.0 | 0.04 | 19.76 | 0.00 | 2.154 | 10.82 | 0.56 | 6.7 | 93.1 | 0.2 | -0.11 | 0.64 | 0.65 | 0.85 | 3.43 | 39022 | 4420 | 12 | 0 | 74 | 168 | 0 | logfile |
✔ | 8J26 | 35945 | 2023-08-09 | 2023-04-14 | 3.4 | 3.96 | 3.29 | 3.7 | 0.028 | 1.81 | 0.0 | 0.05 | 28.11 | 0.00 | 2.066 | 7.74 | 0.56 | 7.8 | 92.2 | 0.0 | -1.01 | 0.76 | 0.68 | 2.77 | 3.7 | 0.003 | 1.21 | 0.0 | 0.04 | 27.97 | 0.00 | 2.200 | 10.94 | 0.28 | 6.4 | 93.6 | 0.0 | -1.01 | 0.94 | 0.82 | 0.81 | 2.41 | 5406 | 427 | 6 | 90 | 1 | 0 | 0 | logfile |
✔ | 8Si3 | 40497 | 2023-08-19 | 2023-04-14 | 2.61 | 2.82 | 2.75 | 2.9 | 0.009 | 1.18 | 0.0 | 0.05 | 18.76 | 0.01 | 1.981 | 4.43 | 0.41 | 8.7 | 90.7 | 0.6 | -5.14 | 0.58 | 0.74 | 4.13 | 2.9 | 0.004 | 0.62 | 0.0 | 0.04 | 17.63 | 0.00 | 1.901 | 14.57 | 1.53 | 7.6 | 92.3 | 0.2 | -0.58 | 1.44 | 0.63 | 0.83 | 3.49 | 74749 | 4420 | 12 | 0 | 61 | 160 | 36136 | logfile |
✔ | 8SiA | 40504 | 2023-08-19 | 2023-04-14 | 2.91 | 3.13 | 3.00 | 3.1 | 0.013 | 1.25 | 0.0 | 0.09 | 18.89 | 0.01 | 1.993 | 5.03 | 0.72 | 14.5 | 85.0 | 0.5 | -6.42 | 0.61 | 0.69 | 3.40 | 3.1 | 0.004 | 0.74 | 2.0 | 0.10 | 18.01 | 0.00 | 2.007 | 20.18 | 1.79 | 12.1 | 87.8 | 0.2 | -2.66 | 1.22 | 0.63 | 0.77 | 2.89 | 74681 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✔ | 8Si6 | 40500 | 2023-08-19 | 2023-04-14 | 2.44 | 2.67 | 2.66 | 2.8 | 0.012 | 1.10 | 0.0 | 0.05 | 19.19 | 0.01 | 2.047 | 3.07 | 0.00 | 7.5 | 91.8 | 0.7 | -5.09 | 0.45 | 0.52 | 1.04 | 2.7 | 0.003 | 0.70 | 0.0 | 0.04 | 18.19 | 0.00 | 1.988 | 12.77 | 1.30 | 8.1 | 91.6 | 0.3 | -0.31 | 1.80 | 0.62 | 0.83 | 3.28 | 74889 | 4428 | 8 | 0 | 65 | 0 | 36240 | logfile |
✔ | 8Si8 | 40502 | 2023-08-19 | 2023-04-14 | 2.99 | 3.23 | 3.11 | 3.2 | 0.014 | 1.31 | 0.0 | 0.06 | 18.72 | 0.01 | 1.990 | 4.28 | 0.41 | 12.7 | 86.6 | 0.7 | -5.92 | 0.66 | 0.78 | 3.56 | 3.2 | 0.005 | 0.70 | 0.0 | 0.05 | 17.83 | 0.00 | 1.973 | 17.48 | 2.07 | 11.0 | 88.9 | 0.1 | -1.86 | 1.27 | 0.68 | 0.84 | 2.13 | 74753 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✔ | 8Si4 | 40498 | 2023-08-19 | 2023-04-14 | 2.46 | 2.61 | 2.60 | 2.7 | 0.014 | 1.27 | 0.0 | 0.07 | 19.03 | 0.01 | 2.040 | 4.33 | 0.82 | 11.4 | 87.9 | 0.7 | -5.18 | 0.58 | 0.72 | 3.54 | 2.7 | 0.005 | 0.66 | 0.0 | 0.05 | 18.64 | 0.00 | 1.865 | 16.38 | 1.23 | 8.9 | 90.8 | 0.3 | -1.65 | 0.84 | 0.63 | 0.76 | 2.78 | 75145 | 4420 | 12 | 0 | 65 | 236 | 36148 | logfile |
✔ | 8Si7 | 40501 | 2023-08-19 | 2023-04-14 | 2.59 | 2.88 | 2.81 | 3.0 | 0.015 | 1.22 | 0.0 | 0.06 | 18.76 | 0.01 | 1.983 | 3.79 | 0.20 | 9.1 | 90.2 | 0.7 | -4.99 | 0.58 | 0.76 | 4.17 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 18.07 | 0.00 | 1.897 | 14.50 | 0.94 | 8.5 | 91.0 | 0.4 | -0.49 | 0.86 | 0.60 | 0.83 | 3.57 | 74897 | 4420 | 12 | 0 | 65 | 156 | 36136 | logfile |
✔ | 8Si5 | 40499 | 2023-08-19 | 2023-04-14 | 2.17 | 2.32 | 2.30 | 2.3 | 0.015 | 1.22 | 0.0 | 0.07 | 17.88 | 0.01 | 2.001 | 3.41 | 0.31 | 7.7 | 92.1 | 0.2 | -3.02 | 0.60 | 0.78 | 4.56 | 2.3 | 0.005 | 0.69 | 0.0 | 0.05 | 17.46 | 0.00 | 1.857 | 13.97 | 0.69 | 5.6 | 94.4 | 0.0 | -0.20 | 0.67 | 0.65 | 0.86 | 3.67 | 74865 | 4388 | 12 | 0 | 65 | 404 | 35916 | logfile |
✔ | 8J1N | 35928 | 2023-08-09 | 2023-04-13 | 2.51 | 2.65 | 2.47 | 2.7 | 0.009 | 1.01 | 0.0 | 0.05 | 14.64 | 0.00 | 2.219 | 8.99 | 0.00 | 2.9 | 97.1 | 0.0 | 1.72 | 0.60 | 0.79 | 3.77 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 16.76 | 0.00 | 2.257 | 6.56 | 1.18 | 1.7 | 98.3 | 0.0 | 3.31 | 0.57 | 0.63 | 0.87 | 3.43 | 3292 | 414 | 3 | 0 | 4 | 0 | 0 | logfile |