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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8K7C | 36938 | 2023-12-08 | 2023-07-26 | 3.9 | 4.56 | 4.09 | 4.5 | 0.009 | 0.96 | 0.0 | 0.05 | 13.87 | 0.01 | 1.837 | 13.49 | 0.21 | 8.8 | 91.2 | 0.0 | -1.19 | 0.66 | 0.84 | 2.01 | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 16.25 | 0.00 | 1.913 | 7.63 | 0.21 | 5.2 | 94.8 | 0.0 | 0.32 | 0.45 | 0.64 | 0.82 | 1.38 | 9271 | 1174 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8K7B | 36937 | 2023-12-09 | 2023-07-26 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9496 | 1180 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8K7A | 36936 | 2023-12-08 | 2023-07-26 | 4.2 | 6.79 | 4.47 | 6.7 | 0.007 | 1.46 | 2.0 | 0.07 | 14.73 | 0.01 | 1.638 | 7.00 | 0.30 | 6.0 | 93.3 | 0.7 | -3.62 | 0.70 | 0.75 | — | 6.7 | 0.003 | 0.75 | 0.0 | 0.04 | 13.80 | 0.00 | 1.876 | 17.52 | 0.00 | 5.3 | 94.4 | 0.3 | -0.06 | 1.03 | 0.71 | 0.81 | — | 8918 | 1126 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8K6L | 36922 | 2023-12-07 | 2023-07-25 | 2.92 | 3.27 | 2.96 | 3.2 | 0.005 | 1.00 | 1.0 | 0.09 | 17.75 | 0.02 | 2.297 | 6.71 | 2.17 | 5.0 | 95.0 | 0.0 | -2.44 | 0.63 | 0.80 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4155 | 547 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 8TJX | 41313 | 2023-12-08 | 2023-07-24 | 2.44 | 3.10 | 2.65 | 2.9 | 0.006 | 0.64 | 0.0 | 0.04 | 23.40 | 0.01 | 1.872 | 12.24 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.85 | 0.85 | — | 2.9 | 0.007 | 0.61 | 0.0 | 0.04 | 22.83 | 0.01 | 1.837 | 11.39 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.81 | 0.84 | 0.86 | — | 7839 | 0 | 2 | 365 | 27 | 0 | 0 | logfile |
✔ | 8TJQ | 41308 | 2023-12-08 | 2023-07-24 | 3.4 | 4.09 | 3.45 | 3.4 | 0.005 | 0.63 | 0.0 | 0.03 | 23.78 | 0.00 | 1.883 | 19.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.85 | — | 3.4 | 0.008 | 0.72 | 0.0 | 0.04 | 23.57 | 0.01 | 1.835 | 21.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.13 | 0.92 | 0.90 | — | 9296 | 0 | 2 | 433 | 28 | 0 | 0 | logfile |
✔ | 8TJV | 41312 | 2023-12-09 | 2023-07-24 | 2.99 | 3.53 | 2.99 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 22.96 | 0.00 | 1.526 | 10.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.89 | — | 3.1 | 0.008 | 0.69 | 0.0 | 0.04 | 22.44 | 0.01 | 1.086 | 12.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.92 | 0.92 | — | 8778 | 0 | 2 | 409 | 32 | 0 | 0 | logfile |
✔ | 8TJU | 41311 | 2023-12-09 | 2023-07-24 | 3.46 | 4.75 | 3.48 | 3.4 | 0.006 | 0.67 | 0.0 | 0.04 | 24.42 | 0.01 | 1.874 | 27.33 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.86 | — | 3.4 | 0.008 | 0.70 | 0.0 | 0.04 | 23.90 | 0.01 | 1.792 | 28.47 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.43 | 0.94 | 0.91 | — | 8771 | 0 | 2 | 409 | 27 | 0 | 0 | logfile |
✔ | 8K5B | 36900 | 2023-12-07 | 2023-07-21 | 3.43 | 3.67 | 3.31 | 3.6 | 0.004 | 0.72 | 0.0 | 0.05 | 17.22 | 0.00 | 2.213 | 12.54 | 1.18 | 5.5 | 94.5 | 0.0 | 0.37 | 0.48 | 0.77 | 1.68 | 3.6 | 0.003 | 0.66 | 0.0 | 0.05 | 17.71 | 0.00 | 2.249 | 11.49 | 0.39 | 5.2 | 94.8 | 0.0 | 0.75 | 0.31 | 0.49 | 0.78 | 1.97 | 2374 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8K53 | 36896 | 2023-12-09 | 2023-07-21 | 3.8 | 3.95 | 3.74 | 3.9 | 0.003 | 0.63 | 0.0 | 0.05 | 14.59 | 0.00 | 2.149 | 6.63 | 0.18 | 4.8 | 95.1 | 0.1 | 0.04 | 0.73 | 0.71 | 1.11 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.74 | 0.00 | 2.197 | 7.44 | 0.00 | 4.8 | 95.2 | 0.1 | 0.13 | 0.99 | 0.73 | 0.70 | 1.01 | 10602 | 1350 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 8K5D | 36902 | 2023-12-07 | 2023-07-21 | 3.74 | 3.93 | 3.66 | 3.9 | 0.007 | 0.76 | 0.0 | 0.04 | 19.08 | 0.00 | 2.203 | 11.34 | 0.40 | 5.9 | 94.1 | 0.0 | 0.46 | 0.52 | 0.79 | 2.10 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 19.59 | 0.00 | 2.307 | 10.91 | 0.40 | 6.2 | 93.8 | 0.0 | 0.32 | 0.26 | 0.52 | 0.79 | 2.01 | 2345 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8TJ3 | 41299 | 2023-12-10 | 2023-07-20 | 3.2 | 3.62 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 13.85 | 0.02 | 2.416 | 10.13 | 1.16 | 7.4 | 92.4 | 0.1 | 0.15 | 0.73 | 0.58 | 0.54 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.49 | 0.00 | 1.956 | 16.53 | 0.00 | 8.0 | 92.0 | 0.0 | 0.48 | 1.88 | 0.79 | 0.76 | 1.68 | 13127 | 833 | 2 | 0 | 0 | 0 | 6652 | logfile |
✔ | 8TJ2 | 41298 | 2023-12-07 | 2023-07-20 | 3.0 | 3.23 | 3.05 | 3.2 | 0.006 | 0.79 | 0.0 | 0.05 | 13.71 | 0.01 | 1.823 | 8.53 | 1.67 | 3.5 | 96.5 | 0.0 | -1.17 | 0.63 | 0.84 | 3.97 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.74 | 0.00 | 1.878 | 6.03 | 2.71 | 5.0 | 95.0 | 0.0 | -0.73 | 0.46 | 0.62 | 0.84 | 3.25 | 54252 | 3744 | 18 | 0 | 0 | 0 | 26460 | logfile |
✔ | 8THU | 41272 | 2023-12-09 | 2023-07-18 | 3.1 | 3.86 | 3.08 | 3.2 | 0.004 | 0.68 | 0.0 | 0.04 | 28.56 | 0.01 | 1.528 | 5.35 | 0.00 | 2.2 | 97.8 | 0.0 | 1.40 | 0.93 | 0.89 | 2.77 | 3.2 | 0.004 | 0.57 | 0.0 | 0.03 | 28.42 | 0.00 | 2.194 | 8.77 | 0.16 | 2.4 | 97.6 | 0.0 | 2.69 | 0.29 | 0.94 | 0.90 | 2.11 | 11902 | 760 | 10 | 291 | 0 | 0 | 0 | logfile |
✔ | 8K4B | 36882 | 2023-12-08 | 2023-07-17 | 3.9 | 4.47 | 4.31 | 4.4 | 0.007 | 1.40 | 0.0 | 0.07 | 15.60 | 0.01 | 2.010 | 8.38 | 0.91 | 7.0 | 92.8 | 0.2 | -3.82 | 0.66 | 0.75 | 1.21 | 4.3 | 0.003 | 0.84 | 0.0 | 0.04 | 16.54 | 0.00 | 2.022 | 15.21 | 0.51 | 7.3 | 92.7 | 0.0 | -0.93 | 1.84 | 0.68 | 0.80 | 1.35 | 8918 | 1126 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8PUW | 17949 | 2023-12-09 | 2023-07-17 | 3.01 | 3.27 | 3.01 | 3.2 | 0.004 | 0.69 | 0.0 | 0.04 | 12.23 | 0.01 | 2.276 | 3.16 | 0.00 | 1.6 | 98.4 | 0.0 | 0.73 | 0.85 | 0.88 | 3.21 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 13.17 | 0.00 | 2.191 | 5.05 | 0.17 | 1.3 | 98.7 | 0.0 | 2.21 | 0.26 | 0.86 | 0.90 | 2.85 | 11160 | 1442 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K3U | 36861 | 2023-12-08 | 2023-07-17 | 3.06 | 3.51 | 3.21 | 3.5 | 0.009 | 1.07 | 0.0 | 0.06 | 14.18 | 0.00 | 2.072 | 18.03 | 0.73 | 5.9 | 94.0 | 0.2 | -1.45 | 0.55 | 0.67 | 2.06 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 15.34 | 0.00 | 2.072 | 8.04 | 0.24 | 2.5 | 97.5 | 0.0 | 1.11 | 1.21 | 0.48 | 0.65 | 1.48 | 8914 | 1194 | 4 | 2 | 8 | 0 | 0 | logfile |
✔ | 8K3V | 36862 | 2023-12-09 | 2023-07-17 | 3.1 | 3.38 | 3.15 | 3.3 | 0.008 | 1.07 | 2.0 | 0.07 | 17.59 | 0.01 | 2.227 | 8.20 | 4.91 | 5.4 | 94.6 | 0.0 | -0.31 | 0.65 | 0.81 | 3.01 | 3.3 | 0.005 | 0.61 | 0.0 | 0.04 | 15.77 | 0.00 | 2.242 | 5.87 | 0.08 | 3.9 | 96.1 | 0.0 | 1.32 | 0.53 | 0.66 | 0.83 | 3.13 | 11248 | 1400 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8K3X | 36864 | 2023-12-09 | 2023-07-17 | 2.86 | 3.04 | 2.99 | 3.1 | 0.012 | 0.94 | 0.0 | 0.06 | 12.85 | 0.01 | 2.196 | 4.37 | 0.20 | 5.2 | 94.8 | 0.0 | -0.82 | 0.56 | 0.78 | 2.78 | 3.1 | 0.002 | 0.52 | 0.0 | 0.04 | 15.10 | 0.00 | 2.237 | 4.73 | 1.69 | 2.3 | 97.7 | 0.0 | 1.92 | 1.23 | 0.59 | 0.82 | 2.66 | 10386 | 1386 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8K3W | 36863 | 2023-12-09 | 2023-07-17 | 2.91 | 3.20 | 3.02 | 3.2 | 0.009 | 1.12 | 0.0 | 0.07 | 17.13 | 0.01 | 2.285 | 10.08 | 2.89 | 3.7 | 96.3 | 0.0 | -0.02 | 0.57 | 0.73 | 2.43 | 3.3 | 0.002 | 0.49 | 0.0 | 0.04 | 16.84 | 0.00 | 2.225 | 6.48 | 3.34 | 2.0 | 98.0 | 0.0 | 2.36 | 0.71 | 0.58 | 0.76 | 3.00 | 10916 | 1388 | 4 | 0 | 6 | 0 | 0 | logfile |