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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8SAX | 40283 | 2023-08-16 | 2023-04-02 | 4.0 | 4.49 | 4.01 | 4.3 | 0.004 | 0.65 | 0.0 | 0.06 | 10.03 | 0.00 | 2.035 | 2.64 | 2.12 | 2.7 | 97.0 | 0.4 | -0.49 | 0.77 | 0.75 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.54 | 0.00 | 2.116 | 7.17 | 0.33 | 4.0 | 95.6 | 0.4 | -0.72 | 2.66 | 0.79 | 0.81 | — | 19860 | 2496 | 24 | 0 | 51 | 0 | 0 | logfile |
✔ | 8SAY | 40284 | 2023-08-16 | 2023-04-02 | 3.4 | 3.65 | 3.40 | 3.6 | 0.006 | 1.03 | 0.0 | 0.06 | 14.14 | 0.01 | 1.984 | 3.04 | 0.00 | 6.5 | 93.2 | 0.3 | -2.14 | 0.70 | 0.74 | 2.38 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 16.36 | 0.00 | 2.160 | 9.59 | 0.33 | 5.8 | 93.9 | 0.2 | -1.16 | 1.37 | 0.72 | 0.77 | 2.02 | 19902 | 2459 | 24 | 0 | 64 | 0 | 0 | logfile |
✔ | 8SB1 | 40287 | 2023-08-16 | 2023-04-02 | 4.3 | 4.23 | 4.16 | 4.2 | 0.007 | 1.00 | 0.0 | 0.05 | 13.81 | 0.01 | 2.035 | 3.18 | 0.00 | 7.1 | 92.7 | 0.2 | -2.33 | 0.70 | 0.76 | — | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 14.02 | 0.00 | 2.145 | 11.97 | 0.05 | 7.0 | 92.7 | 0.4 | -1.69 | 0.54 | 0.69 | 0.76 | — | 19979 | 2466 | 24 | 0 | 67 | 0 | 0 | logfile |
✔ | 8SAS | 40278 | 2023-08-16 | 2023-04-01 | 4.0 | 4.28 | 4.02 | 4.2 | 0.008 | 1.18 | 0.0 | 0.06 | 13.80 | 0.01 | 2.002 | 4.09 | 0.00 | 8.7 | 90.9 | 0.4 | -3.16 | 0.69 | 0.72 | — | 4.2 | 0.005 | 0.88 | 0.0 | 0.05 | 16.52 | 0.00 | 2.037 | 14.56 | 0.98 | 8.4 | 91.3 | 0.3 | -2.21 | 1.04 | 0.74 | 0.80 | — | 20028 | 2472 | 24 | 0 | 66 | 0 | 0 | logfile |
✔ | 8SAL | 40273 | 2023-08-15 | 2023-04-01 | 4.9 | 5.54 | 4.74 | 5.0 | 0.005 | 0.89 | 0.0 | 0.05 | 13.67 | 0.01 | 2.065 | 4.56 | 0.00 | 8.4 | 91.4 | 0.1 | -2.31 | 0.76 | 0.70 | — | 5.0 | 0.004 | 0.83 | 0.0 | 0.05 | 13.29 | 0.01 | 2.042 | 24.63 | 0.00 | 9.2 | 90.7 | 0.1 | -1.99 | 2.48 | 0.79 | 0.77 | — | 18435 | 2343 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SAR | 40277 | 2023-08-16 | 2023-04-01 | 3.82 | 3.32 | 3.81 | 3.2 | 0.006 | 1.11 | 0.0 | 0.06 | 14.50 | 0.01 | 2.247 | 4.44 | 0.00 | 7.4 | 92.2 | 0.4 | -2.28 | 0.62 | 0.73 | 1.75 | 3.2 | 0.003 | 0.70 | 0.0 | 0.05 | 16.46 | 0.00 | 2.122 | 10.32 | 0.23 | 9.3 | 90.4 | 0.2 | -1.81 | 0.45 | 0.62 | 0.74 | 1.36 | 19963 | 2465 | 27 | 0 | 63 | 0 | 0 | logfile |
✔ | 8SAN | 40274 | 2023-08-16 | 2023-04-01 | 4.6 | 4.80 | 4.46 | 4.7 | 0.006 | 0.97 | 0.0 | 0.06 | 13.48 | 0.01 | 2.064 | 5.03 | 0.09 | 9.9 | 89.9 | 0.2 | -2.24 | 0.68 | 0.75 | — | 4.7 | 0.003 | 0.81 | 0.0 | 0.05 | 13.97 | 0.00 | 2.083 | 15.37 | 0.05 | 9.4 | 90.4 | 0.2 | -2.04 | 0.61 | 0.70 | 0.77 | — | 19908 | 2454 | 21 | 0 | 48 | 0 | 0 | logfile |
✔ | 8SAQ | 40275 | 2023-08-15 | 2023-04-01 | 3.9 | 4.17 | 3.91 | 4.1 | 0.005 | 0.88 | 0.0 | 0.05 | 12.51 | 0.01 | 1.985 | 5.03 | 0.05 | 7.7 | 92.0 | 0.2 | -1.78 | 0.73 | 0.77 | 2.26 | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 15.40 | 0.00 | 2.102 | 10.82 | 0.29 | 6.3 | 93.5 | 0.1 | -1.33 | 1.17 | 0.74 | 0.79 | 1.77 | 18946 | 2364 | 21 | 0 | 36 | 0 | 0 | logfile |
✔ | 8oMQ | 16974 | 2023-08-11 | 2023-03-31 | 3.11 | 2.37 | 3.05 | 3.0 | 0.007 | 1.23 | 0.0 | 0.08 | 16.49 | 0.00 | 1.847 | 16.52 | 2.99 | 7.3 | 92.7 | 0.0 | -3.30 | 0.75 | 0.78 | 1.53 | 3.0 | 0.004 | 0.68 | 0.0 | 0.04 | 17.78 | 0.00 | 1.899 | 17.36 | 0.51 | 4.0 | 96.0 | 0.0 | -0.67 | 0.53 | 0.73 | 0.73 | 1.35 | 10584 | 1322 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8SA3 | 40263 | 2023-08-11 | 2023-03-31 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✔ | 8oM9 | 16971 | 2023-08-13 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.80 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 19.00 | 0.00 | 1.822 | 19.87 | 0.65 | 5.7 | 94.3 | 0.1 | -0.75 | 0.53 | 0.67 | 0.66 | 0.65 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 8oMA | 16972 | 2023-08-12 | 2023-03-31 | 3.29 | 2.61 | 3.29 | 3.2 | 0.008 | 1.30 | 1.0 | 0.09 | 19.39 | 0.01 | 1.878 | 28.14 | 2.97 | 7.9 | 92.1 | 0.0 | -1.51 | 0.68 | 0.70 | 0.46 | 1.6 | 0.004 | 0.78 | 0.0 | 0.04 | 19.82 | 0.00 | 1.907 | 24.91 | 0.42 | 6.7 | 93.3 | 0.0 | -0.58 | 1.94 | 0.63 | 0.60 | 0.62 | 11379 | 1337 | 6 | 34 | 3 | 0 | 0 | logfile |
✔ | 8oMo | 16973 | 2023-08-11 | 2023-03-31 | 3.43 | 2.51 | 3.47 | 3.2 | 0.007 | 1.36 | 2.0 | 0.09 | 17.30 | 0.00 | 1.488 | 21.48 | 4.68 | 8.0 | 92.0 | 0.0 | -3.82 | 0.75 | 0.80 | 1.33 | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 18.65 | 0.00 | 1.786 | 20.36 | 0.88 | 6.1 | 93.9 | 0.0 | -0.88 | 1.11 | 0.71 | 0.72 | 1.19 | 10290 | 1288 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2023-08-09 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |
✘ | 8SA2 | 40262 | 2023-08-11 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✘ | 8SA5 | 40265 | 2023-08-10 | 2023-03-31 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7649 | 0 | 4 | 345 | 2 | 0 | 0 | logfile |
✔ | 8oM5 | 16969 | 2023-08-13 | 2023-03-31 | 3.52 | 2.68 | 3.58 | 2.9 | 0.007 | 1.08 | 1.0 | 0.08 | 17.61 | 0.00 | 1.974 | 21.73 | 1.93 | 7.9 | 92.0 | 0.1 | -1.45 | 0.75 | 0.80 | 1.43 | 2.2 | 0.004 | 0.82 | 0.0 | 0.05 | 18.38 | 0.00 | 1.946 | 22.22 | 0.55 | 8.2 | 91.7 | 0.1 | -1.05 | 1.04 | 0.70 | 0.71 | 1.07 | 13138 | 1640 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8oMU | 16977 | 2023-08-09 | 2023-03-31 | 3.43 | 3.90 | 3.53 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 18.00 | 0.00 | 2.230 | 13.64 | 0.79 | 4.1 | 95.9 | 0.0 | 0.64 | 0.61 | 0.77 | 1.27 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 17.76 | 0.00 | 2.229 | 13.64 | 0.39 | 4.0 | 96.0 | 0.0 | 0.91 | 0.87 | 0.60 | 0.76 | 1.22 | 4737 | 612 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLX | 16964 | 2023-08-13 | 2023-03-30 | 3.1 | 2.39 | 3.11 | 2.1 | 0.007 | 0.97 | 0.0 | 0.07 | 19.60 | 0.01 | 1.992 | 17.01 | 2.00 | 5.4 | 94.6 | 0.0 | -0.32 | 0.77 | 0.78 | 2.47 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 19.84 | 0.00 | 2.114 | 14.26 | 0.53 | 4.2 | 95.8 | 0.0 | 0.08 | 0.35 | 0.74 | 0.76 | 2.56 | 14492 | 1699 | 5 | 45 | 2 | 0 | 0 | logfile |
✔ | 8iWM | 35771 | 2023-08-09 | 2023-03-30 | 3.17 | 3.65 | 2.80 | 3.5 | 0.004 | 0.76 | 0.0 | 0.04 | 14.98 | 0.00 | 2.390 | 9.55 | 5.26 | 3.4 | 96.6 | 0.0 | -2.66 | 0.56 | 0.76 | 2.24 | 3.5 | 0.002 | 0.65 | 0.0 | 0.04 | 15.22 | 0.00 | 2.254 | 8.78 | 1.05 | 2.2 | 97.8 | 0.0 | 0.48 | 0.58 | 0.59 | 0.77 | 2.24 | 1980 | 271 | 1 | 0 | 1 | 0 | 0 | logfile |