Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GZ3	34389	2023-02-18	2022-09-24	3.3	3.13	—	3.1	0.012	1.44	3.0	0.10	13.66	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.004	0.68	0.0	0.04	14.05	0.00	2.134	5.74	0.47	1.5	98.5	0.0	0.66	1.19	0.71	0.83	3.17	8542	789	7	0	434	1	0	logfile
✔	8GXZ	34366	2023-02-27	2022-09-21	3.1	2.45	3.10	3.0	0.006	0.54	0.0	0.04	13.81	0.00	1.826	6.59	0.00	4.2	95.8	0.0	0.46	0.54	0.74	3.39	3.0	0.005	0.66	0.0	0.05	16.70	0.01	1.903	8.11	0.26	3.2	96.8	0.0	0.03	2.14	0.68	0.83	3.06	29499	3788	14	0	3	0	0	logfile
✔	8GXW	34363	2023-02-27	2022-09-21	2.7	2.30	2.77	2.5	0.006	0.55	0.0	0.04	13.98	0.00	1.843	5.14	0.00	2.4	97.6	0.0	0.98	0.66	0.81	3.89	2.5	0.003	0.56	0.0	0.04	17.37	0.00	1.981	6.86	2.34	1.8	98.2	0.0	1.17	1.11	0.71	0.84	3.61	29530	3788	15	0	4	0	0	logfile
✔	8GXX	34364	2023-02-27	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	8GXY	34365	2023-02-27	2022-09-21	2.8	2.43	2.80	2.7	0.005	0.52	0.0	0.04	14.57	0.00	1.951	5.20	0.03	2.1	97.9	0.0	0.94	0.63	0.82	4.11	2.6	0.005	0.65	0.0	0.05	18.00	0.01	2.050	7.25	2.30	2.3	97.7	0.0	0.97	0.73	0.72	0.87	3.66	29472	3788	14	0	2	0	0	logfile
✔	8GXU	34362	2023-02-27	2022-09-21	2.5	2.02	2.54	2.3	0.007	0.57	0.0	0.05	14.47	0.01	1.855	4.64	0.00	3.2	96.8	0.0	0.82	0.64	0.79	4.52	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.124	6.63	1.27	2.3	97.7	0.0	1.06	1.36	0.70	0.83	4.00	29503	3788	15	0	3	0	0	logfile
✔	8B41	15836	2023-02-27	2022-09-19	3.8	3.07	3.30	3.7	0.002	0.48	0.0	0.04	11.83	0.00	2.169	9.50	4.69	3.6	96.4	0.0	-0.49	0.78	0.77	1.42	3.7	0.003	0.58	0.0	0.04	14.46	0.00	2.166	11.85	0.37	4.1	95.9	0.0	-0.10	1.50	0.78	0.77	1.04	31259	3805	10	0	0	0	0	logfile
✔	8B40	15835	2023-02-23	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.003	0.65	0.0	0.04	10.91	0.00	2.129	15.12	0.00	5.6	94.4	0.0	-0.80	1.02	0.76	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	8GWi	34313	2023-02-24	2022-09-17	3.18	3.41	3.21	3.4	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.52	0.32	3.4	0.003	0.69	0.0	0.04	16.81	0.00	2.116	11.53	0.22	7.9	92.0	0.1	-1.47	1.69	0.77	0.86	2.06	21955	2668	13	52	9	1	0	logfile
✘	8GWN	34317	2023-02-24	2022-09-17	3.38	3.97	3.47	3.7	0.015	1.23	0.0	0.06	18.41	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21860	2655	12	52	9	0	0	logfile
✔	8GWF	34311	2023-02-24	2022-09-17	3.39	3.99	3.49	3.6	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.84	0.76	1.55	3.6	0.003	0.66	0.0	0.04	17.00	0.00	2.124	13.47	0.31	7.9	91.9	0.2	-1.35	1.46	0.86	0.83	1.64	21955	2668	13	52	9	1	0	logfile
✔	8GWG	34312	2023-02-24	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.85	0.0	0.04	17.35	0.01	2.073	20.42	0.70	8.6	91.2	0.2	-2.15	1.82	0.77	0.63	0.57	21955	2668	13	52	9	1	0	logfile
✔	8GWo	34318	2023-02-24	2022-09-17	3.8	4.21	3.91	4.0	0.008	0.82	0.0	0.05	15.18	0.01	1.755	15.71	0.66	8.8	91.1	0.1	-2.55	0.81	0.82	1.08	4.0	0.003	0.64	0.0	0.04	15.57	0.00	2.121	12.30	0.35	7.3	92.7	0.0	-1.67	0.50	0.82	0.82	0.97	21880	2655	12	53	9	0	0	logfile
✔	8B3J	15830	2023-02-17	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.57	0.0	0.04	16.23	0.00	2.139	6.53	0.00	6.9	93.1	0.0	-2.36	0.23	0.44	0.87	2.72	5688	718	3	0	0	0	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	8EJ3	28174	2023-02-25	2022-09-16	3.13	3.79	3.10	3.4	0.005	0.64	0.0	0.04	22.03	0.01	2.022	5.38	15.79	9.2	89.9	0.9	-2.87	0.90	0.90	1.87	3.4	0.005	0.64	0.0	0.04	19.11	0.00	1.931	5.92	0.20	5.8	94.1	0.1	-0.60	0.61	0.90	0.91	1.83	25339	3058	11	78	5	0	0	logfile
✔	8GWE	34310	2023-02-24	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.87	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	8EJ5	28176	2023-02-17	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.77	0.0	0.04	14.35	0.00	2.123	17.08	0.00	4.2	95.5	0.3	-0.12	2.26	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	8GVK	32099	2023-02-17	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	8Eio	28160	2023-02-19	2022-09-15	2.8	2.72	2.98	3.0	0.006	1.05	0.0	0.04	11.52	0.01	1.991	1.09	1.09	1.0	99.0	0.1	-0.27	0.68	0.86	4.04	3.0	0.004	0.58	0.0	0.04	16.09	0.00	2.009	4.00	2.17	2.3	97.7	0.0	1.06	1.63	0.69	0.87	3.06	9550	1162	3	0	25	0	0	logfile

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