Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SAX	40283	2023-08-16	2023-04-02	4.0	4.49	4.01	4.3	0.004	0.65	0.0	0.06	10.03	0.00	2.035	2.64	2.12	2.7	97.0	0.4	-0.49	0.77	0.75	—	4.3	0.003	0.67	0.0	0.04	13.54	0.00	2.116	7.17	0.33	4.0	95.6	0.4	-0.72	2.66	0.79	0.81	—	19860	2496	24	0	51	0	0	logfile
✔	8SAY	40284	2023-08-16	2023-04-02	3.4	3.65	3.40	3.6	0.006	1.03	0.0	0.06	14.14	0.01	1.984	3.04	0.00	6.5	93.2	0.3	-2.14	0.70	0.74	2.38	3.6	0.003	0.73	0.0	0.04	16.36	0.00	2.160	9.59	0.33	5.8	93.9	0.2	-1.16	1.37	0.72	0.77	2.02	19902	2459	24	0	64	0	0	logfile
✔	8SB1	40287	2023-08-16	2023-04-02	4.3	4.23	4.16	4.2	0.007	1.00	0.0	0.05	13.81	0.01	2.035	3.18	0.00	7.1	92.7	0.2	-2.33	0.70	0.76	—	4.2	0.004	0.75	0.0	0.04	14.02	0.00	2.145	11.97	0.05	7.0	92.7	0.4	-1.69	0.54	0.69	0.76	—	19979	2466	24	0	67	0	0	logfile
✔	8SAS	40278	2023-08-16	2023-04-01	4.0	4.28	4.02	4.2	0.008	1.18	0.0	0.06	13.80	0.01	2.002	4.09	0.00	8.7	90.9	0.4	-3.16	0.69	0.72	—	4.2	0.005	0.88	0.0	0.05	16.52	0.00	2.037	14.56	0.98	8.4	91.3	0.3	-2.21	1.04	0.74	0.80	—	20028	2472	24	0	66	0	0	logfile
✔	8SAL	40273	2023-08-15	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	5.0	0.004	0.83	0.0	0.05	13.29	0.01	2.042	24.63	0.00	9.2	90.7	0.1	-1.99	2.48	0.79	0.77	—	18435	2343	12	0	0	0	0	logfile
✔	8SAR	40277	2023-08-16	2023-04-01	3.82	3.32	3.81	3.2	0.006	1.11	0.0	0.06	14.50	0.01	2.247	4.44	0.00	7.4	92.2	0.4	-2.28	0.62	0.73	1.75	3.2	0.003	0.70	0.0	0.05	16.46	0.00	2.122	10.32	0.23	9.3	90.4	0.2	-1.81	0.45	0.62	0.74	1.36	19963	2465	27	0	63	0	0	logfile
✔	8SAN	40274	2023-08-16	2023-04-01	4.6	4.80	4.46	4.7	0.006	0.97	0.0	0.06	13.48	0.01	2.064	5.03	0.09	9.9	89.9	0.2	-2.24	0.68	0.75	—	4.7	0.003	0.81	0.0	0.05	13.97	0.00	2.083	15.37	0.05	9.4	90.4	0.2	-2.04	0.61	0.70	0.77	—	19908	2454	21	0	48	0	0	logfile
✔	8SAQ	40275	2023-08-15	2023-04-01	3.9	4.17	3.91	4.1	0.005	0.88	0.0	0.05	12.51	0.01	1.985	5.03	0.05	7.7	92.0	0.2	-1.78	0.73	0.77	2.26	4.1	0.003	0.78	0.0	0.04	15.40	0.00	2.102	10.82	0.29	6.3	93.5	0.1	-1.33	1.17	0.74	0.79	1.77	18946	2364	21	0	36	0	0	logfile
✔	8oMQ	16974	2023-08-11	2023-03-31	3.11	2.37	3.05	3.0	0.007	1.23	0.0	0.08	16.49	0.00	1.847	16.52	2.99	7.3	92.7	0.0	-3.30	0.75	0.78	1.53	3.0	0.004	0.68	0.0	0.04	17.78	0.00	1.899	17.36	0.51	4.0	96.0	0.0	-0.67	0.53	0.73	0.73	1.35	10584	1322	4	0	4	0	0	logfile
✘	8SA3	40263	2023-08-11	2023-03-31	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9268	0	4	420	2	0	0	logfile
✔	8oM9	16971	2023-08-13	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.80	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.6	0.004	0.72	0.0	0.04	19.00	0.00	1.822	19.87	0.65	5.7	94.3	0.1	-0.75	0.53	0.67	0.66	0.65	13314	1548	6	44	4	0	0	logfile
✔	8oMA	16972	2023-08-12	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.78	0.0	0.04	19.82	0.00	1.907	24.91	0.42	6.7	93.3	0.0	-0.58	1.94	0.63	0.60	0.62	11379	1337	6	34	3	0	0	logfile
✔	8oMo	16973	2023-08-11	2023-03-31	3.43	2.51	3.47	3.2	0.007	1.36	2.0	0.09	17.30	0.00	1.488	21.48	4.68	8.0	92.0	0.0	-3.82	0.75	0.80	1.33	2.1	0.005	0.80	0.0	0.05	18.65	0.00	1.786	20.36	0.88	6.1	93.9	0.0	-0.88	1.11	0.71	0.72	1.19	10290	1288	4	0	4	0	0	logfile
✘	8SA4	40264	2023-08-09	2023-03-31	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5193	0	3	236	1	0	0	logfile
✘	8SA2	40262	2023-08-11	2023-03-31	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9268	0	4	420	2	0	0	logfile
✘	8SA5	40265	2023-08-10	2023-03-31	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7649	0	4	345	2	0	0	logfile
✔	8oM5	16969	2023-08-13	2023-03-31	3.52	2.68	3.58	2.9	0.007	1.08	1.0	0.08	17.61	0.00	1.974	21.73	1.93	7.9	92.0	0.1	-1.45	0.75	0.80	1.43	2.2	0.004	0.82	0.0	0.05	18.38	0.00	1.946	22.22	0.55	8.2	91.7	0.1	-1.05	1.04	0.70	0.71	1.07	13138	1640	4	0	4	0	0	logfile
✔	8oMU	16977	2023-08-09	2023-03-31	3.43	3.90	3.53	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.230	13.64	0.79	4.1	95.9	0.0	0.64	0.61	0.77	1.27	3.8	0.003	0.65	0.0	0.04	17.76	0.00	2.229	13.64	0.39	4.0	96.0	0.0	0.91	0.87	0.60	0.76	1.22	4737	612	2	0	0	0	0	logfile
✔	8oLX	16964	2023-08-13	2023-03-30	3.1	2.39	3.11	2.1	0.007	0.97	0.0	0.07	19.60	0.01	1.992	17.01	2.00	5.4	94.6	0.0	-0.32	0.77	0.78	2.47	2.1	0.004	0.65	0.0	0.04	19.84	0.00	2.114	14.26	0.53	4.2	95.8	0.0	0.08	0.35	0.74	0.76	2.56	14492	1699	5	45	2	0	0	logfile
✔	8iWM	35771	2023-08-09	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.65	0.0	0.04	15.22	0.00	2.254	8.78	1.05	2.2	97.8	0.0	0.48	0.58	0.59	0.77	2.24	1980	271	1	0	1	0	0	logfile

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